ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... 28 5.2
2UL16_VZVD (P09293) Gene 44 protein 28 6.8

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle|
            attachment abnormal protein 3)
          Length = 3767

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 91   TVCNICLISFCSSCVCFSLIRFATA 17
            T+C  CL+ FC+ C CF   RFA A
Sbjct: 3431 TLC--CLLYFCTKCHCFKGRRFAGA 3453



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>UL16_VZVD (P09293) Gene 44 protein|
          Length = 363

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 98  VTRSKQKNLPPAPFHII 148
           +TR +Q NLPP  FH+I
Sbjct: 82  ITRPRQMNLPPKTFHVI 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,356,323
Number of Sequences: 219361
Number of extensions: 365898
Number of successful extensions: 1340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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