Clone Name | rbaet95g12 |
---|---|
Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 278 bits (140), Expect = 5e-72 Identities = 143/144 (99%) Strand = Plus / Minus Query: 35 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacggtctg 94 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1174 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 1115 Query: 95 aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 1055 Query: 155 cactggtccttatttatcatacag 178 |||||||||||||||||||||||| Sbjct: 1054 cactggtccttatttatcatacag 1031
>emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chromosome 6, complete sequence Length = 35013 Score = 42.1 bits (21), Expect = 0.56 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 aaaaacaaacacatgaagaacagaa 64 ||||||||||||||||| ||||||| Sbjct: 27216 aaaaacaaacacatgaacaacagaa 27240
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 aaacaaacacatgaagaacag 62 ||||||||||||||||||||| Sbjct: 6009611 aaacaaacacatgaagaacag 6009631 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 aaacaaacacatgaagaacag 62 ||||||||||||||||||||| Sbjct: 6003871 aaacaaacacatgaagaacag 6003851
>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183562 Score = 42.1 bits (21), Expect = 0.56 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 aaaaacaaacacatgaagaacagaa 64 ||||||||||||||||| ||||||| Sbjct: 144429 aaaaacaaacacatgaacaacagaa 144405
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 aaacaaacacatgaagaacag 62 ||||||||||||||||||||| Sbjct: 30450 aaacaaacacatgaagaacag 30470 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 aaacaaacacatgaagaacag 62 ||||||||||||||||||||| Sbjct: 24710 aaacaaacacatgaagaacag 24690
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 tggtccttatttatcatacag 178 ||||||||||||||||||||| Sbjct: 1462 tggtccttatttatcatacag 1442
>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence Length = 235703 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aaaaacaaacacatgaagaa 59 |||||||||||||||||||| Sbjct: 83070 aaaaacaaacacatgaagaa 83051
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ctcactggtccttatttatc 172 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>emb|AL158203.12| Human DNA sequence from clone RP11-93B10 on chromosome Xq12-13.1, complete sequence Length = 162680 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 gaatcagagaaaaacaaaca 50 |||||||||||||||||||| Sbjct: 142794 gaatcagagaaaaacaaaca 142813
>gb|AC084154.1| Caenorhabditis elegans cosmid Y22D7AR, complete sequence Length = 78353 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 aatcagagaaaaacaaaca 50 ||||||||||||||||||| Sbjct: 55448 aatcagagaaaaacaaaca 55430
>gb|AY810608.1| Schistosoma japonicum SJCHGC04750 protein mRNA, partial cds Length = 783 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 agaaaaacaaacacatgaa 56 ||||||||||||||||||| Sbjct: 744 agaaaaacaaacacatgaa 762
>gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosome 9, complete sequence Length = 196150 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 agaaaaacaaacacatgaa 56 ||||||||||||||||||| Sbjct: 103892 agaaaaacaaacacatgaa 103874
>gb|AC121898.3| Mus musculus BAC clone RP24-161A24 from chromosome 15, complete sequence Length = 193321 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 aaaaacaaacacatgaaga 58 ||||||||||||||||||| Sbjct: 69679 aaaaacaaacacatgaaga 69697
>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence Length = 283075 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 caaggagcaaacagaagaa 120 ||||||||||||||||||| Sbjct: 148411 caaggagcaaacagaagaa 148429
>emb|AL592226.8| Human DNA sequence from clone RP11-16P12 on chromosome 9 Contains a CpG island, complete sequence Length = 101339 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 37 gagaaaaacaaacacatgaagaa 59 |||||||| |||||||||||||| Sbjct: 41003 gagaaaaaaaaacacatgaagaa 41025
>emb|AL355593.21| Human DNA sequence from clone RP11-99E24 on chromosome Xq21.32-22.3 Contains the PCDH19 gene for protocadherin 19 protein and a CpG island, complete sequence Length = 168065 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 aatcagagaaaaacaaaca 50 ||||||||||||||||||| Sbjct: 21998 aatcagagaaaaacaaaca 21980
>emb|AL158149.14| Human DNA sequence from clone RP11-208G24 on chromosome 9 Contains the GAS1 gene for growth arrest-specific 1, the 5' end of a novel gene and a CpG island, complete sequence Length = 102100 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agagaaaaacaaacacatg 54 ||||||||||||||||||| Sbjct: 16420 agagaaaaacaaacacatg 16438
>emb|AL031119.1|HS28C20 Human DNA sequence from clone RP1-28C20 on chromosome 6q24 Contains the 3' end of a variant of the EPM2A gene for progressive myoclonus type 2 epilepsy (Lafora disease) protein (laforin) and a BTB/POZ domain zinc finger protein pseudogene, complete sequence Length = 115835 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aatcagagaaaaacaaaca 50 ||||||||||||||||||| Sbjct: 37485 aatcagagaaaaacaaaca 37503
>ref|XM_970561.1| PREDICTED: Tribolium castaneum similar to CG15319-PB (LOC664565), mRNA Length = 7038 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 aaagcgaatcagagaaaaa 44 ||||||||||||||||||| Sbjct: 4801 aaagcgaatcagagaaaaa 4819
>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11 Length = 35000 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 atctaccacccgctccatt 138 ||||||||||||||||||| Sbjct: 4764 atctaccacccgctccatt 4746
>gb|DQ099283.1| Arachis hypogaea clone Ah-392 microsatellite sequence Length = 215 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 aaagcgaatcagagaaaaa 44 ||||||||||||||||||| Sbjct: 40 aaagcgaatcagagaaaaa 22
>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence Length = 197992 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cagagaaaaacaaacacat 53 ||||||||||||||||||| Sbjct: 9688 cagagaaaaacaaacacat 9706
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170186 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 atctaccacccgctccatt 138 ||||||||||||||||||| Sbjct: 80976 atctaccacccgctccatt 80958
>gb|AC104635.12| Homo sapiens 3 BAC RP11-567G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66672 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 36 agagaaaaacaaacacatgaaga 58 ||||||||||||| ||||||||| Sbjct: 28927 agagaaaaacaaaaacatgaaga 28949
>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence Length = 203375 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 aaaaacaaacacatgaaga 58 ||||||||||||||||||| Sbjct: 198184 aaaaacaaacacatgaaga 198166
>gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, complete sequence Length = 179308 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 aaggagcaaacagaagaat 121 ||||||||||||||||||| Sbjct: 28479 aaggagcaaacagaagaat 28461
>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166), mRNA Length = 1822 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 atctaccacccgctccatt 138 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, complete sequence Length = 100079 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 aaaaacaaacacatgaaga 58 ||||||||||||||||||| Sbjct: 42470 aaaaacaaacacatgaaga 42452
>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA Length = 1849 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 atctaccacccgctccatt 138 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>emb|AL603724.3|RN141K6 Rattus norvegicus chromosome 20 clone PAC RPCI-31-484K6 strain Brown Norway (BN/ssNHsd), RT1n haplotype Length = 94535 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 aatcagagaaaaacaaaca 50 ||||||||||||||||||| Sbjct: 78208 aatcagagaaaaacaaaca 78190
>ref|NM_065050.1| Caenorhabditis elegans Y22D7AR.12 (Y22D7AR.12) mRNA, complete cds Length = 3414 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aatcagagaaaaacaaaca 50 ||||||||||||||||||| Sbjct: 1178 aatcagagaaaaacaaaca 1196
>gb|AC159022.2| Pan troglodytes BAC clone CH251-510P23 from chromosome unknown, complete sequence Length = 185833 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 cagagaaaaacaaacacat 53 ||||||||||||||||||| Sbjct: 42318 cagagaaaaacaaacacat 42300
>gb|AC090551.6| Homo sapiens chromosome 16 clone RP11-197K24, complete sequence Length = 174737 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 cagagaaaaacaaacacat 53 ||||||||||||||||||| Sbjct: 66424 cagagaaaaacaaacacat 66406
>gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.849_N_15, complete sequence Length = 233454 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 agaaaaacaaacacatgaa 56 ||||||||||||||||||| Sbjct: 49672 agaaaaacaaacacatgaa 49690
>gb|DQ141328.1| Danio rerio I-FBPL precursor, mRNA, complete cds Length = 1389 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 gagaaaaacaaacacatga 55 ||||||||||||||||||| Sbjct: 20 gagaaaaacaaacacatga 38
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete sequence Length = 387740 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 120 atctaccacccgctccatt 138 ||||||||||||||||||| Sbjct: 338459 atctaccacccgctccatt 338441
>gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequence Length = 161035 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agagaaaaacaaacacatg 54 ||||||||||||||||||| Sbjct: 103491 agagaaaaacaaacacatg 103509
>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete sequence Length = 176724 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cagagaaaaacaaacacat 53 ||||||||||||||||||| Sbjct: 68131 cagagaaaaacaaacacat 68149
>gb|AC147224.5| Mus musculus BAC clone RP23-101E7 from 15, complete sequence Length = 201924 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 aaaaacaaacacatgaaga 58 ||||||||||||||||||| Sbjct: 48696 aaaaacaaacacatgaaga 48678
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 agagaaaaacaaacacatg 54 ||||||||||||||||||| Sbjct: 1443959 agagaaaaacaaacacatg 1443977
>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete sequence Length = 144844 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 caaggagcaaacagaagaa 120 ||||||||||||||||||| Sbjct: 123793 caaggagcaaacagaagaa 123775 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,556,412 Number of Sequences: 3902068 Number of extensions: 2556412 Number of successful extensions: 184114 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 183908 Number of HSP's gapped (non-prelim): 206 length of query: 178 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 156 effective length of database: 17,147,199,772 effective search space: 2674963164432 effective search space used: 2674963164432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)