ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCYG_SEPOF (P56826) Haemocyanin, units G and H (Fragments) 28 5.5
2SPON1_RAT (P35446) Spondin-1 precursor (F-spondin) 28 5.5
3SPON1_MOUSE (Q8VCC9) Spondin-1 precursor (F-spondin) 28 5.5
4SPON1_HUMAN (Q9HCB6) Spondin-1 precursor (F-spondin) (Vascular s... 28 5.5
5SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin) 28 7.2

>HCYG_SEPOF (P56826) Haemocyanin, units G and H (Fragments)|
          Length = 560

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 108 TPASCQLACCLHGLP 152
           TP + Q ACCLHG+P
Sbjct: 3   TPDAPQYACCLHGMP 17



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>SPON1_RAT (P35446) Spondin-1 precursor (F-spondin)|
          Length = 807

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  TEQVGKCSLYSCILSACMLSPWASSDVWS 166
           T Q  KC +  C    C+LSPW+    WS
Sbjct: 599 TSQAEKCMMPECHTIPCLLSPWSE---WS 624



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>SPON1_MOUSE (Q8VCC9) Spondin-1 precursor (F-spondin)|
          Length = 807

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  TEQVGKCSLYSCILSACMLSPWASSDVWS 166
           T Q  KC +  C    C+LSPW+    WS
Sbjct: 599 TSQAEKCMMPECHTIPCLLSPWSE---WS 624



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>SPON1_HUMAN (Q9HCB6) Spondin-1 precursor (F-spondin) (Vascular smooth muscle|
           cell growth-promoting factor)
          Length = 807

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 80  TEQVGKCSLYSCILSACMLSPWASSDVWS 166
           T Q  KC +  C    C+LSPW+    WS
Sbjct: 599 TSQAEKCMMPECHTIPCLLSPWSE---WS 624



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>SPON1_XENLA (P35447) Spondin-1 precursor (F-spondin)|
          Length = 803

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 80  TEQVGKCSLYSCILSACMLSPWASSDVWS 166
           T +V KC +  C    C+LSPW+    WS
Sbjct: 593 TTEVEKCMMPECHTIPCVLSPWSE---WS 618


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,542,273
Number of Sequences: 219361
Number of extensions: 538698
Number of successful extensions: 1323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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