>SEC13_MOUSE (Q9D1M0) SEC13-related protein (SEC13-like protein 1)|
          Length = 321

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = -1

Query: 301 FRTPVWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQVTTV 173
           F   VW VSWS+T NILAVS G+N VTLWKE+VDG+W  ++ V
Sbjct: 260 FNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 302



 Score = 35.0 bits (79), Expect = 0.048
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 292 PVWRVSWS--LTGNILAVSDGNNNVTLWKEAVDGEWQQ 185
           PVW+V+W+  + GNILA    +  V +WKE  +G W++
Sbjct: 58  PVWQVAWAHPMYGNILASCSYDRKVIIWKEE-NGTWEK 94

>SEC13_HUMAN (P55735) SEC13-related protein (SEC13-like protein 1)|
          Length = 321

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = -1

Query: 301 FRTPVWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQVTTV 173
           F   VW VSWS+T NILAVS G+N VTLWKE+VDG+W  ++ V
Sbjct: 260 FNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 302



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 292 PVWRVSWS--LTGNILAVSDGNNNVTLWKEAVDGEWQQ 185
           PVW+V+W+  + GNILA    +  V +W+E  +G W++
Sbjct: 58  PVWQVAWAHPMYGNILASCSYDRKVIIWREE-NGTWEK 94

>SEC13_YEAST (Q04491) Protein transport protein SEC13|
          Length = 297

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = -1

Query: 301 FRTPVWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQ 188
           F   +WR SWSL+GN+LA+S G+N VTLWKE ++G+W+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290



 Score = 34.7 bits (78), Expect = 0.063
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 292 PVWRVSWS--LTGNILAVSDGNNNVTLWKEAVDGEWQQV 182
           PVWRV W+    G ILA    +  V +WKE  +G W Q+
Sbjct: 55  PVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGRWSQI 92

>SEC13_PICPA (P53024) Protein transport protein SEC13|
          Length = 289

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = -1

Query: 286 WRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQVTTV 173
           WR SWSL+GN+LA+S G+N VTL KE + G+W+    V
Sbjct: 250 WRASWSLSGNVLAISGGDNKVTLSKENIQGKWESAGEV 287

>SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)|
          Length = 421

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 289 VWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQ 188
           VWRVSW++TG +LA S  +  V LWK      W+
Sbjct: 281 VWRVSWNITGTVLASSGDDGCVRLWKANYMDNWK 314

>SEH1_YEAST (P53011) Nucleoporin SEH1 (Nuclear pore protein SEH1) (SEC13|
           homolog 1)
          Length = 349

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 304 DFRTPVWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQVTTV 173
           D    VW VSW+LTG IL+ +  +  V LWK     E++ ++ +
Sbjct: 302 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 345

>STAB2_MOUSE (Q8R4U0) Stabilin-2 precursor [Contains: Short form stabilin-2]|
          Length = 2559

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 203 GWRMAASDYRLAIDV---SCSTASCICLHIICMALITSGGPCDC*AA 72
           G+R  A +   A DV   +CS A C C+H +C + I+  G C+C +A
Sbjct: 149 GFRGTACENCAAEDVFGPNCS-AVCSCVHGVCNSGISGDGTCECLSA 194

>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)|
          Length = 881

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 33  SLSHALPVLSSQSSSLTITGPSTCNQSHTDNMKTNAASGRTRNIYG*TVVTCCHSPSTAS 212
           S S A+   ++  S+L IT   T + S   N  T+AAS      +  T+ T C + + AS
Sbjct: 642 SPSFAISTATTTESNL-ITNTITASCSTDSNFPTSAASSTDETAFTRTISTSCSTLNGAS 700

Query: 213 FHRVTLLL-PSETASMFPVSDHDTLQTGVLK 302
                L   P +T ++ P S   +  T  L+
Sbjct: 701 TQTSELTTSPMKTNTVVPASSFPSTTTTCLE 731

>YSW4_CAEEL (Q10019) Hypothetical protein T25D10.4|
          Length = 246

 Score = 26.2 bits (56), Expect(2) = 1.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 192 HSPSTASFHRVTLLLPSET 248
           HSPS++ ++  TL+LPS+T
Sbjct: 198 HSPSSSVYNASTLILPSKT 216



 Score = 22.3 bits (46), Expect(2) = 1.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  VQPKQQPNNHRALHL 103
           + P+QQ NN R LH+
Sbjct: 169 ILPRQQTNNIRTLHV 183

>AROA_CHLTR (O84371) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 440

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 161 HLWLDGSHLLPFAIHSFFPQGHVVVAIRDRQYVS 262
           H+    S  +PF IH     GHV ++ +D QY S
Sbjct: 139 HIRQKTSSSIPFTIHGPLSPGHVTISGQDSQYAS 172

>NAS36_CAEEL (Q18206) Zinc metalloproteinase nas-36 precursor (EC 3.4.24.21)|
           (Nematode astacin 36)
          Length = 617

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 208 LLSTGSRCCCHQRPPVCFLSATTT 279
           L +TG R CC+ +P + F+S T T
Sbjct: 437 LRNTGFRFCCYDKPEISFVSQTDT 460

>YNH8_YEAST (P53939) Hypothetical 45.9 kDa protein in TPM1-MKS1 intergenic|
           region
          Length = 407

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +3

Query: 30  KSLSHALPVLSSQSSSLTITGPSTCNQSHTDNMKTNAASGRTRNIYG*TVVTCCHSPS 203
           +S+S  LP   SQ  SL  T P+T     T  +K N+ +  TR++Y   V     SPS
Sbjct: 251 RSISRKLP--KSQPGSLPTTMPATA----TKTIKQNSTTPTTRSVYNKNVGRSNTSPS 302

>SEH1_SCHPO (Q10099) Nuclear pore protein SEH1 homolog|
          Length = 339

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 289 VWRVSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQVTTV 173
           VWR  +++TG IL+ S  +  V LWK +    ++ ++ V
Sbjct: 292 VWRCRFNVTGTILSSSGDDGCVRLWKASYANLFKCISVV 330

>RPOA_BUCBP (P59455) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 331

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 33  SLSHALPVLSSQSSSLTITGPSTCNQSHTDNM-KTNAASGRTRNIYG*TVVTCCHSPSTA 209
           +L H +  L+ +++S+++     C + +   + +TN  S    N  G  +V  C+SP   
Sbjct: 125 NLDHIICTLTCKNASISMRIKVQCGRGYVPVISRTNVISDNKENYVGKLLVDACYSPVER 184

Query: 210 SFHRV 224
             ++V
Sbjct: 185 MIYKV 189

>PTPRO_HUMAN (Q16827) Receptor-type tyrosine-protein phosphatase O precursor (EC|
           3.1.3.48) (Glomerular epithelial protein 1) (Protein
           tyrosine phosphatase U2) (PTPase U2) (PTP-U2)
          Length = 1216

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 90  GPSTCNQSHTDNMKTNAASGRTRNIYG*TVVTCCHSPSTASFHRVTLLLPSETASMFPVS 269
           G     +S T N+ T   S    + Y  +V TC    S  S  R+  L P+   S+F V+
Sbjct: 674 GKKKIKKSVTRNVMTAILSLPPGDTYNLSVTTCTERGSNTSMLRLVKLEPAPPKSLFAVN 733

Query: 270 DHDTLQT 290
              T  T
Sbjct: 734 KTQTSVT 740

>Y7511_RHILO (Q985V6) UPF0301 protein mlr7511|
          Length = 202

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 221 PVERSCGWRMAASDYRLAIDVSCSTASCICLHIICMALITSG-GP 90
           PV+RS G+ + + DYR+   ++ S   C+   +  +  I+SG GP
Sbjct: 92  PVDRSRGFVLHSGDYRVESSLTVSDDICLTATVDILRAISSGRGP 136

>MIAA_NEIMB (Q9JZR0) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 313

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +2

Query: 5   LNFLLNQVKKLVTCTACSVQPKQQPNNHRAL---HL*SKPYR*YEDKCS*R*NTKHLWLD 175
           L+FL   ++K+   TAC ++P       RAL   +L  KP             + HL   
Sbjct: 136 LDFLYRTLQKVDPETACRLKPNDSQRIGRALEVYYLTGKPM------------STHLGSL 183

Query: 176 GSHLLPFAIHS 208
            SH LPF +H+
Sbjct: 184 TSHTLPFDLHT 194

>XKDO_BACSU (P54334) Phage-like element PBSX protein xkdO|
          Length = 1332

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 265 TGNILAVSDGNNNVTLWKEAVD 200
           T NI A S  NNN+T++++A+D
Sbjct: 763 TNNIFAQSPSNNNMTVFQQALD 784

>DMA1_SCHPO (Q10322) Protein dma1|
          Length = 267

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 195 SPSTASFHRVTLLLPSETASMFPVSDHDTLQTG 293
           S S    + V L  PS+T+  +P+S++D LQ G
Sbjct: 105 SSSGTFLNHVRLSPPSKTSKPYPISNNDILQLG 137

>MIAA_NEIMA (Q9JUU5) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 313

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +2

Query: 5   LNFLLNQVKKLVTCTACSVQPKQQPNNHRAL---HL*SKPYR*YEDKCS*R*NTKHLWLD 175
           L+FL   ++++   TAC ++P       RAL   +L  KP             ++HL   
Sbjct: 136 LDFLYRTLQQVDPETACRLKPNDSQRIGRALEVYYLTGKPM------------SEHLGRQ 183

Query: 176 GSHLLPFAIHS 208
             H LPF +H+
Sbjct: 184 SPHTLPFDLHT 194

>V28K_PLRV1 (P17518) 28 kDa protein (ORF 1)|
          Length = 247

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 30  KSLSHALPVLSSQSSSLTITGPSTCNQSHTDNMKTNAASGR--TRNIYG*TVVTCCHSPS 203
           +S  H LP+L+ +   ++ +G       H + ++     G      I G T+V     P+
Sbjct: 53  RSFLHVLPLLNCKRGRISTSGLQLPRHLHYECLEWGLLCGTHPAIQIVGLTIVIKLDDPT 112

Query: 204 TASFHRVTLLLPSETA 251
           TA+ +R  LL  S ++
Sbjct: 113 TAAAYRSELLRVSSSS 128

>GUNB_PSEFL (P18126) Endoglucanase B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase) (EGB)
          Length = 511

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 26/88 (29%), Positives = 39/88 (44%)
 Frame = +3

Query: 33  SLSHALPVLSSQSSSLTITGPSTCNQSHTDNMKTNAASGRTRNIYG*TVVTCCHSPSTAS 212
           S+S ++P  SS SSS  +TG   CN   T     N     T N +G      C + +T S
Sbjct: 158 SVSSSVPGTSSSSSSSVLTGAQACNWYGTLTPLCN----NTSNGWGYEDGRSCVARTTCS 213

Query: 213 FHRVTLLLPSETASMFPVSDHDTLQTGV 296
                  + S T+S  P+S   + ++ V
Sbjct: 214 AQPAPYGIVS-TSSSTPLSSSSSSRSSV 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,205,028
Number of Sequences: 219361
Number of extensions: 920906
Number of successful extensions: 2662
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)