ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108571.1| Zea mays PCO125418 mRNA sequence 168 6e-39
2gb|BT017254.1| Zea mays clone EL01N0307H10.c mRNA sequence 161 2e-36
3gb|AY111380.1| Zea mays CL4180_1 mRNA sequence 117 2e-23
4ref|XM_506712.1| PREDICTED Oryza sativa (japonica cultivar-group... 70 4e-09
5ref|XM_464047.1| Oryza sativa (japonica cultivar-group), mRNA 70 4e-09
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
7dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
8dbj|AK112028.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
9dbj|AK111732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
10dbj|AK111559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
11dbj|AB055156.1| Oryza sativa mRNA for Sec13p, complete cds 70 4e-09
12ref|NM_128560.2| Arabidopsis thaliana nucleotide binding AT2G300... 62 1e-06
13gb|AY124848.1| Arabidopsis thaliana At2g30050/F23F1.3 mRNA, comp... 62 1e-06
14gb|AC004680.3| Arabidopsis thaliana chromosome 2 clone F23F1 map... 62 1e-06
15gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 62 1e-06
16gb|AF412112.1|AF412112 Arabidopsis thaliana At2g30050/F23F1.3 mR... 62 1e-06
17emb|BX820959.1|CNS0A8KS Arabidopsis thaliana Full-length cDNA Co... 62 1e-06
18gb|AY087553.1| Arabidopsis thaliana clone 36577 mRNA, complete s... 54 3e-04
19ref|XR_004548.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 g... 50 0.004
20ref|XR_002339.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 g... 50 0.004
21ref|XR_005159.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 g... 50 0.004
22dbj|AK016844.1| Mus musculus adult male testis cDNA, RIKEN full-... 50 0.004
23gb|AC115939.8| Mus musculus chromosome 3, clone RP24-549I13, com... 50 0.004
24ref|NM_185078.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.016
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.016
26gb|AF399824.1| Sparus aurata gonadal P450 aromatase mRNA, comple... 48 0.016
27gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 48 0.016
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
29gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 48 0.016
30dbj|AK103569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
31ref|XM_590067.2| PREDICTED: Bos taurus similar to SEC13-like 1 (... 46 0.065
32gb|BC102514.1| Bos taurus cDNA clone MGC:127895 IMAGE:7955153, c... 46 0.065
33dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds 44 0.26
34ref|XM_477253.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
35gb|BT016579.1| Zea mays clone Contig412 mRNA sequence 42 1.0
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
37dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
38dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
39dbj|AK111786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
40dbj|AK104078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
41gb|AY105888.1| Zea mays PCO125513 mRNA sequence 42 1.0
42gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 4.0
43emb|AL139090.11| Human DNA sequence from clone RP11-12B13 on chr... 40 4.0
44emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 i... 40 4.0
45gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromo... 40 4.0
46gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromos... 40 4.0
47gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, co... 40 4.0
48emb|BX510910.5| Zebrafish DNA sequence from clone CH211-73O3, co... 40 4.0
49gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromos... 40 4.0
50gb|AF041468.1| Guillardia theta complete plastid genome 40 4.0
51dbj|AB051290.1| Chrysophrys major cyp19 mRNA for cytochrome P450... 40 4.0 
>gb|AY108571.1| Zea mays PCO125418 mRNA sequence
          Length = 1437

 Score =  168 bits (85), Expect = 6e-39
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                        
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcacgttgttgttgcca 239
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 1163 gtcacttgctgccattcgccatccacagcttccttccacagggtcacattgttgttgccg 1104

                                                                        
Query: 240  tcagagaccgccagtatgtttcctgtcagcgaccacgacaccctccaaacaggggttctg 299
            || || |||||||||||||| || ||||| |||||||||| ||||||||| |||||||||
Sbjct: 1103 tcggaaaccgccagtatgttcccagtcagtgaccacgacagcctccaaacgggggttctg 1044

                 
Query: 300  aaatc 304
            |||||
Sbjct: 1043 aaatc 1039
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>gb|BT017254.1| Zea mays clone EL01N0307H10.c mRNA sequence
          Length = 995

 Score =  161 bits (81), Expect = 2e-36
 Identities = 114/125 (91%)
 Strand = Plus / Minus

                                                                       
Query: 180 gtcacttgctgccattcgccatccacagcttctttccacagggtcacgttgttgttgcca 239
           |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| 
Sbjct: 715 gtcacttgctgccattcgccatccacagcttccttccacagagtcacattgttgttgccg 656

                                                                       
Query: 240 tcagagaccgccagtatgtttcctgtcagcgaccacgacaccctccaaacaggggttctg 299
           || || |||||||||||||| || ||||| |||||||||| ||||||||| |||||||||
Sbjct: 655 tcggaaaccgccagtatgttcccagtcagtgaccacgacagcctccaaacgggggttctg 596

                
Query: 300 aaatc 304
           |||||
Sbjct: 595 aaatc 591
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>gb|AY111380.1| Zea mays CL4180_1 mRNA sequence
          Length = 651

 Score =  117 bits (59), Expect = 2e-23
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                       
Query: 180 gtcacttgctgccattcgccatccacagcttctttccacagggtcacgttgttgttgcca 239
           |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 472 gtcacttgctgccattcgccgtccacagcttccttccacagggtcacattgttgttgccg 413

                                                                       
Query: 240 tcagagaccgccagtatgtttcctgtcagcgaccacgacaccctccaaacaggggttctg 299
           ||||| ||||||||||| ||          |||||||||| |||||| |||||||| |||
Sbjct: 412 tcagacaccgccagtatattnnnnnnnnnngaccacgacagcctccacacaggggtcctg 353

                
Query: 300 aaatc 304
           |||||
Sbjct: 352 aaatc 348
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>ref|XM_506712.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0081C13.10
            mRNA
          Length = 1515

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
            ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1161 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1115
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>ref|XM_464047.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1396

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
            ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1179 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1133
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                              
Query: 180     gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
               ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1904770 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1904724
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0081C13
          Length = 144624

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                            
Query: 180   gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
             ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 44331 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 44285
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>dbj|AK112028.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G01, full
            insert sequence
          Length = 1396

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
            ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1179 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1133
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>dbj|AK111732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039H16, full
            insert sequence
          Length = 1516

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
            ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1162 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1116
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>dbj|AK111559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B03, full
           insert sequence
          Length = 971

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 180 gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
           ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 706 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 660
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>dbj|AB055156.1| Oryza sativa mRNA for Sec13p, complete cds
          Length = 1466

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                           
Query: 180  gtcacttgctgccattcgccatccacagcttctttccacagggtcac 226
            ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct: 1112 gtcacttgctgccattcgccatcgacggcttctttccatagggtcac 1066
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>ref|NM_128560.2| Arabidopsis thaliana nucleotide binding AT2G30050 mRNA, complete cds
          Length = 1281

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 198  ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
            ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 1011 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 952

                                               
Query: 258  tttcctgtcagcgaccacgacaccctccaaacagg 292
            || || |||| ||||||||| |||| ||| |||||
Sbjct: 951  ttaccggtcaacgaccacgagacccgccacacagg 917
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>gb|AY124848.1| Arabidopsis thaliana At2g30050/F23F1.3 mRNA, complete cds
          Length = 909

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 198 ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
           ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 875 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 816

                                              
Query: 258 tttcctgtcagcgaccacgacaccctccaaacagg 292
           || || |||| ||||||||| |||| ||| |||||
Sbjct: 815 ttaccggtcaacgaccacgagacccgccacacagg 781
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>gb|AC004680.3| Arabidopsis thaliana chromosome 2 clone F23F1 map m283, complete
             sequence
          Length = 88543

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                         
Query: 198   ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
             ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 14774 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 14833

                                                
Query: 258   tttcctgtcagcgaccacgacaccctccaaacagg 292
             || || |||| ||||||||| |||| ||| |||||
Sbjct: 14834 ttaccggtcaacgaccacgagacccgccacacagg 14868
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                         
Query: 198   ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
             ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 79226 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 79285

                                                
Query: 258   tttcctgtcagcgaccacgacaccctccaaacagg 292
             || || |||| ||||||||| |||| ||| |||||
Sbjct: 79286 ttaccggtcaacgaccacgagacccgccacacagg 79320
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>gb|AF412112.1|AF412112 Arabidopsis thaliana At2g30050/F23F1.3 mRNA, complete cds
          Length = 1236

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 198  ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
            ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 1006 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 947

                                               
Query: 258  tttcctgtcagcgaccacgacaccctccaaacagg 292
            || || |||| ||||||||| |||| ||| |||||
Sbjct: 946  ttaccggtcaacgaccacgagacccgccacacagg 912
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>emb|BX820959.1|CNS0A8KS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH85ZH09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1147

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 198 ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
           ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 971 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 912

                                              
Query: 258 tttcctgtcagcgaccacgacaccctccaaacagg 292
           || || |||| ||||||||| |||| ||| |||||
Sbjct: 911 ttaccggtcaacgaccacgagacccgccacacagg 877
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>gb|AY087553.1| Arabidopsis thaliana clone 36577 mRNA, complete sequence
          Length = 1226

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  ccatccacagcttctttccacagggtcacgttgttgttgccatcagagaccgccagtatg 257
            ||||| ||||| ||||||||||  |||||||||||||| ||||| || || |||| || |
Sbjct: 1011 ccatcaacagcctctttccacacagtcacgttgttgttcccatcggatacggccaataag 952

                                               
Query: 258  tttcctgtcagcgaccacgacaccctccaaacagg 292
            || || |||| |||| |||| |||| ||| |||||
Sbjct: 951  ttaccggtcaacgacgacgagacccgccacacagg 917
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>ref|XR_004548.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 gene (4933417G07Rik),
           misc RNA
          Length = 1296

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 198 ccatccacagcttctttccacagggtcac 226
           |||||||||| ||||||||||||||||||
Sbjct: 879 ccatccacagattctttccacagggtcac 851
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>ref|XR_002339.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 gene (4933417G07Rik),
           misc RNA
          Length = 1296

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 198 ccatccacagcttctttccacagggtcac 226
           |||||||||| ||||||||||||||||||
Sbjct: 879 ccatccacagattctttccacagggtcac 851
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>ref|XR_005159.1| PREDICTED: Mus musculus RIKEN cDNA 4933417G07 gene (4933417G07Rik),
           misc RNA
          Length = 1271

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 198 ccatccacagcttctttccacagggtcac 226
           |||||||||| ||||||||||||||||||
Sbjct: 879 ccatccacagattctttccacagggtcac 851
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>dbj|AK016844.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933417G07 product:similar to
           SEC13-RELATED PROTEIN [Homo sapiens], full insert
           sequence
          Length = 1138

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 198 ccatccacagcttctttccacagggtcac 226
           |||||||||| ||||||||||||||||||
Sbjct: 721 ccatccacagattctttccacagggtcac 693
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>gb|AC115939.8| Mus musculus chromosome 3, clone RP24-549I13, complete sequence
          Length = 178373

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 198    ccatccacagcttctttccacagggtcac 226
              |||||||||| ||||||||||||||||||
Sbjct: 139307 ccatccacagattctttccacagggtcac 139335
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>ref|NM_185078.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1213

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 251 cagtatgtttcctgtcagcgaccacgacaccctcca 286
           |||||||||||| ||||| ||||| |||||||||||
Sbjct: 819 cagtatgtttccggtcagtgaccaggacaccctcca 784
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 251      cagtatgtttcctgtcagcgaccacgacaccctcca 286
                |||||||||||| ||||| ||||| |||||||||||
Sbjct: 34637084 cagtatgtttccggtcagtgaccaggacaccctcca 34637049
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>gb|AF399824.1| Sparus aurata gonadal P450 aromatase mRNA, complete cds
          Length = 1923

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 212 tttccacagggtcacgttgttgtt 235
           ||||||||||||||||||||||||
Sbjct: 531 tttccacagggtcacgttgttgtt 508
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 251   cagtatgtttcctgtcagcgaccacgacaccctcca 286
             |||||||||||| ||||| ||||| |||||||||||
Sbjct: 94801 cagtatgtttccggtcagtgaccaggacaccctcca 94766
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 251      cagtatgtttcctgtcagcgaccacgacaccctcca 286
                |||||||||||| ||||| ||||| |||||||||||
Sbjct: 34727156 cagtatgtttccggtcagtgaccaggacaccctcca 34727121
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence,
            complete sequence
          Length = 129302

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 251  cagtatgtttcctgtcagcgaccacgacaccctcca 286
            |||||||||||| ||||| ||||| |||||||||||
Sbjct: 6249 cagtatgtttccggtcagtgaccaggacaccctcca 6284
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>dbj|AK103569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132M13, full
           insert sequence
          Length = 1369

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 251 cagtatgtttcctgtcagcgaccacgacaccctcca 286
           |||||||||||| ||||| ||||| |||||||||||
Sbjct: 974 cagtatgtttccggtcagtgaccaggacaccctcca 939
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>ref|XM_590067.2| PREDICTED: Bos taurus similar to SEC13-like 1 (LOC512530), mRNA
          Length = 899

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 213 ttccacagggtcacgttgttgttgccatcagagaccgccagtatgtt 259
           |||||||||||||| || ||||  ||| ||||||||||||| |||||
Sbjct: 503 ttccacagggtcaccttattgtctccaccagagaccgccaggatgtt 457
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>gb|BC102514.1| Bos taurus cDNA clone MGC:127895 IMAGE:7955153, complete cds
          Length = 1409

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 213 ttccacagggtcacgttgttgttgccatcagagaccgccagtatgtt 259
           |||||||||||||| || ||||  ||| ||||||||||||| |||||
Sbjct: 928 ttccacagggtcaccttattgtctccaccagagaccgccaggatgtt 882
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>dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds
          Length = 268959

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 83     aatcacagggccc-tccacttgtaatcaaa 111
              ||||||||||||| ||||||||||||||||
Sbjct: 247017 aatcacagggcccctccacttgtaatcaaa 246988
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>ref|XM_477253.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1405

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 254 tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
           ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 978 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 938
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>gb|BT016579.1| Zea mays clone Contig412 mRNA sequence
          Length = 1409

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 270  gaccacgacaccctccaaacagggg 294
            ||||||||||||||||| |||||||
Sbjct: 1055 gaccacgacaccctccagacagggg 1031
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 254     tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
               ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 8176145 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 8176185
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>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0003K21
          Length = 158810

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 254   tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
             ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 59168 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 59208
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>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_C08
          Length = 117923

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 254    tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
              ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 109917 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 109957
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>dbj|AK111786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097O22, full
           insert sequence
          Length = 1417

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 254 tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
           ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 985 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 945
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>dbj|AK104078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E03, full
           insert sequence
          Length = 1405

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 254 tatgtttcctgtcagcgaccacgacaccctccaaacagggg 294
           ||||||||| ||||  ||||| || ||||||||||||||||
Sbjct: 978 tatgtttccagtcaaggaccaggaaaccctccaaacagggg 938
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>gb|AY105888.1| Zea mays PCO125513 mRNA sequence
          Length = 1559

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 270  gaccacgacaccctccaaacagggg 294
            ||||||||||||||||| |||||||
Sbjct: 1094 gaccacgacaccctccagacagggg 1070
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     gctgccattcgccatccaca 206
               ||||||||||||||||||||
Sbjct: 5637809 gctgccattcgccatccaca 5637828
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>emb|AL139090.11| Human DNA sequence from clone RP11-12B13 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 128468

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   atacagataatatgaagacaaatg 138
             |||||||||||||||||| |||||
Sbjct: 23616 atacagataatatgaagaaaaatg 23639
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>emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 in linkage group 15,
             complete sequence
          Length = 162948

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 102   tgtaatcaaagccatacagataatatga 129
             |||||||||||||  |||||||||||||
Sbjct: 10117 tgtaatcaaagccccacagataatatga 10090
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>gb|AC183299.2| Pan troglodytes BAC clone CH251-263C8 from chromosome 17, complete
             sequence
          Length = 170313

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    ctgtccagccaaagcagcag 76
             ||||||||||||||||||||
Sbjct: 68927 ctgtccagccaaagcagcag 68946
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>gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromosome ul, complete
             sequence
          Length = 206511

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gccatccacagcttctttcc 216
             ||||||||||||||||||||
Sbjct: 56832 gccatccacagcttctttcc 56851
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>gb|AC034268.4| Homo sapiens chromosome 17, clone RP11-312B18, complete sequence
          Length = 198935

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ctgtccagccaaagcagcag 76
             ||||||||||||||||||||
Sbjct: 95697 ctgtccagccaaagcagcag 95678
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>emb|BX510910.5| Zebrafish DNA sequence from clone CH211-73O3, complete sequence
          Length = 50498

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tttctgcttaatcaagtaaa 30
             ||||||||||||||||||||
Sbjct: 38949 tttctgcttaatcaagtaaa 38968
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>gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromosome ul, complete
              sequence
          Length = 198767

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    gccatccacagcttctttcc 216
              ||||||||||||||||||||
Sbjct: 125280 gccatccacagcttctttcc 125299
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>gb|AF041468.1| Guillardia theta complete plastid genome
          Length = 121524

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 109   aaagccatacagataatatgaagacaaa 136
             ||||| |||||||||||||||| |||||
Sbjct: 57848 aaagcaatacagataatatgaatacaaa 57821
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>dbj|AB051290.1| Chrysophrys major cyp19 mRNA for cytochrome P450 aromatase,
           complete cds
          Length = 1779

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 tttccacagggtcacgttgttgtt 235
           ||||||||| ||||||||||||||
Sbjct: 503 tttccacagagtcacgttgttgtt 480


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,717,694
Number of Sequences: 3902068
Number of extensions: 2717694
Number of successful extensions: 48293
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48186
Number of HSP's gapped (non-prelim): 107
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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