ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95g02 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 86.3 bits (212), Expect = 2e-17 Identities = 40/42 (95%), Positives = 42/42 (100%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 206 +KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 288 TKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 84.3 bits (207), Expect = 7e-17 Identities = 38/41 (92%), Positives = 41/41 (100%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 289 SKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 84.0 bits (206), Expect = 9e-17 Identities = 38/41 (92%), Positives = 40/41 (97%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 292 SKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 84.0 bits (206), Expect = 9e-17 Identities = 38/41 (92%), Positives = 40/41 (97%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 289 SKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 82.4 bits (202), Expect = 3e-16 Identities = 37/42 (88%), Positives = 40/42 (95%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 206 S P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 292 SNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 82.0 bits (201), Expect = 3e-16 Identities = 38/41 (92%), Positives = 39/41 (95%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 292 SKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 81.3 bits (199), Expect = 6e-16 Identities = 37/41 (90%), Positives = 39/41 (95%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 291 SKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 81.3 bits (199), Expect = 6e-16 Identities = 37/41 (90%), Positives = 40/41 (97%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 290 SKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 79.7 bits (195), Expect = 2e-15 Identities = 40/43 (93%), Positives = 41/43 (95%) Frame = -2 Query: 331 SKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 203 SKPETGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 285 SKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 69.7 bits (169), Expect = 2e-12 Identities = 29/39 (74%), Positives = 35/39 (89%) Frame = -2 Query: 325 PETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 253 PVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 68.9 bits (167), Expect = 3e-12 Identities = 29/37 (78%), Positives = 33/37 (89%) Frame = -2 Query: 322 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 212 ETGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 298 ETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 212 TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 57.8 bits (138), Expect = 7e-09 Identities = 23/39 (58%), Positives = 34/39 (87%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 203 TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 56.2 bits (134), Expect = 2e-08 Identities = 24/37 (64%), Positives = 32/37 (86%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 55.8 bits (133), Expect = 3e-08 Identities = 24/36 (66%), Positives = 32/36 (88%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 212 TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 48.9 bits (115), Expect = 3e-06 Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = -2 Query: 319 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -2 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 155 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +3 Query: 102 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 281 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528 Query: 282 GCTLSKTPITSPVSGLL 332 + S + +SP + ++ Sbjct: 529 ASSSSSSSASSPAAAVV 545
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -2 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 161 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +2 Query: 104 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 244 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>PAND_AGRT5 (Q8U9Q9) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 155 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -1 Query: 128 RGNNVFVCVSSIKPE*SVYILASVIISCSPAHDI 27 RG+ V +C SS E ++Y A ++++ +P +D+ Sbjct: 80 RGDQVIICSSSYVEETALYDTAPMVLTFTPKNDV 113
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 134 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 253 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 113 THCCLDSFLSTDQPTYACTKDEYL 184 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 91 FILDTHTNTLLPRFFPLHRPT 153 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 91 FILDTHTNTLLPRFFPLHRPT 153 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 91 FILDTHTNTLLPRFFPLHRPT 153 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 91 FILDTHTNTLLPRFFPLHRPT 153 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)| Length = 989 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 322 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 221 E G + VF+ Q SDT +G+ DV+ GV Y Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380
>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 134 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 253 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +1 Query: 220 RTTHPGS*HPWAPW 261 R+ HP HPWAPW Sbjct: 799 RSQHPCYRHPWAPW 812
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = +3 Query: 90 FYTRYTHK----HIVASILSSPPTNPRMHAQKMSI 182 FY+++T HI S+ S PP+ +H Q++++ Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233
>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)| Length = 986 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/47 (29%), Positives = 20/47 (42%) Frame = +2 Query: 104 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 244 H + +D +S Y DEY FC+ +L +P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYARFCFMYHKLPTEIPETHDDD 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,791,156 Number of Sequences: 219361 Number of extensions: 833783 Number of successful extensions: 2187 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2186 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
