ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DR206_PEA (P13240) Disease resistance response protein 206 48 1e-05
2BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding facto... 34 0.13
3CCG8_NEUCR (Q01306) Clock-controlled protein 8 32 0.48
4HPC2_YEAST (Q01448) Histone promoter control 2 protein 32 0.62
5L18B_LUPLU (P52779) Protein LlR18B (LlPR10.1B) 31 1.4
6MUC1_YEAST (P08640) Mucin-like protein 1 precursor 30 2.4
7RAGE_HUMAN (Q15109) Advanced glycosylation end product-specific ... 30 2.4
8RAGE_MOUSE (Q62151) Advanced glycosylation end product-specific ... 30 3.1
9CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CR... 29 4.0
10CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CR... 29 4.0
11AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein 29 5.3
12FFAR1_MESAU (Q76JU8) Free fatty acid receptor 1 (G-protein coupl... 28 6.9
13VGLZ_EHV1K (P32515) Glycoprotein precursor 28 6.9
14P210L_HUMAN (Q5VU65) Nuclear pore membrane glycoprotein 210-like... 28 6.9
15ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 ant... 28 6.9
16HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor 28 6.9
17L1CA1_BRARE (Q90478) Neural cell adhesion molecule L1.1 (N-CAM L... 28 9.0

>DR206_PEA (P13240) Disease resistance response protein 206|
          Length = 184

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 28/68 (41%), Positives = 38/68 (55%)
 Frame = -1

Query: 426 SAGVGRAQGRYVWASKGNPELLVTMDVVLTSGPYAGSSVTVVGRDDIGAAVRELSVVGGT 247
           S  VGRAQG Y++ +K      ++   VL S  + G+ +T  G D I A  R++SV GGT
Sbjct: 91  SKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGT-ITFAGADPIVAKTRDISVTGGT 149

Query: 246 GQFRMATG 223
           G F M  G
Sbjct: 150 GDFFMHRG 157



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>BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding factor 1) (Protein|
           ABF1) (Bidirectionally acting factor)
          Length = 494

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 256 DHRQLPHRRADVVPAHHRHGGPRVGARREHHVHGHKQLRVPLGRPHVPXLRAPH 417
           DH Q+ H     +PAHH+H  P    R   H H  +Q ++     H   + + H
Sbjct: 277 DHHQVQHHHHPSIPAHHQHQLPEGQQRDVQHHHQQQQQQLQHQEQHQSHVDSGH 330



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>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 232 HPELPRAADHRQLPHRRADVVPAHHRH-GGPRVGARREHHVHGHKQLRVPLGRP 390
           H   P +  H    H++    P HH+H   P+   + +HH H  +Q + P+  P
Sbjct: 9   HMHSPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHHHQQQQQQHPVPVP 62



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>HPC2_YEAST (Q01448) Histone promoter control 2 protein|
          Length = 623

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = +2

Query: 95  STRQIVGEKWNRSTCTTRHGLTKTSSSRTALGWSSRTVFHSTYPVAILNCPVPPTTDSSR 274
           ST Q +G K+N+ST + +  LTK  + + +L  S  +V +S   ++    P       S 
Sbjct: 271 STAQSLG-KFNKSTNSLKAALTKAPAEKVSLKRSISSVTNSDSNISSSKKPTSEKAKKSS 329

Query: 275 TAAPMSSRPTT 307
           +A+ +  +PTT
Sbjct: 330 SASAILPKPTT 340



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>L18B_LUPLU (P52779) Protein LlR18B (LlPR10.1B)|
          Length = 156

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 360 VTMDVVLTSGPYAGSSVTVVGR-----DDIGAAVRELSVVGGTGQFRMATGYVL 214
           +T +  L SGP  GS   +  +     D +  AVRE +   GTG F+   GYVL
Sbjct: 98  ITFESKLLSGPDGGSIGKIKVKFHTKGDVLSDAVREEAKARGTGLFKAVEGYVL 151



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>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = +2

Query: 158  TKTSSSRTALGWSSRTVFHSTYPVAILNCPVPPTTDSSRTAAPMSSRPTTVTEDPA*GPD 337
            T +SSS       S T F S+   + +  P P ++ +  ++AP+SS  T  +  P   P 
Sbjct: 811  TPSSSSNITSSAPSSTPFSSSTESSSVPVPTPSSSTTESSSAPVSSSTTESSVAPVPTPS 870

Query: 338  XXXXXXXXXXXGFPLDAHT 394
                         P  + T
Sbjct: 871  SSSNITSSAPSSIPFSSTT 889



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>RAGE_HUMAN (Q15109) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 404

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 333 GPYAGSSVTVVGRDDIGAAVRELSVVGGTGQFRMATGYVLWK 208
           GP AGS    VG   +G     L ++GG G   +  G +LW+
Sbjct: 327 GPTAGS----VGGSGLGTLALALGILGGLGTAALLIGVILWQ 364



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>RAGE_MOUSE (Q62151) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 403

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -1

Query: 375 NPELLVTMDVVLTSGPYAGSSVTVVGRDDIGAAVRELSVVGGTGQFRMATGYVLWK 208
           +P + + +      GP  GS    VG   +G     L ++GG G   +  G +LW+
Sbjct: 312 SPPVSIRVTETGDEGPAEGS----VGESGLGTLALALGILGGLGVVALLVGAILWR 363



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>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)|
           (Fragment)
          Length = 353

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = +1

Query: 223 PCGHPELPRAADHRQLPHRRADVVPAHHRHGGPRVGARREHHVHGHKQL 369
           P  H  LP    H   PH+     PAHH H  P       HH H H  L
Sbjct: 123 PHQHQTLP---PHHPYPHQHQH--PAHHPHPQPHHQQNHPHH-HSHSHL 165



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>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)|
          Length = 508

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = +1

Query: 223 PCGHPELPRAADHRQLPHRRADVVPAHHRHGGPRVGARREHHVHGHKQL 369
           P  H  LP    H   PH+     PAHH H  P       HH H H  L
Sbjct: 278 PHQHQTLP---PHHPYPHQHQH--PAHHPHPQPHHQQNHPHH-HSHSHL 320



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>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein|
          Length = 437

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 268 LPHRRADV-VPAHHRHGGPRVGARREHHVHGHKQLRVPLGRPHVPXLRAPHA 420
           LP  R++  +PAH+ +  P    +   H H H Q   P  + H    + PHA
Sbjct: 84  LPSARSEQGLPAHNTYSTPHAHTQAHTHAHSHPQ---PHPQSHPQSNQPPHA 132



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>FFAR1_MESAU (Q76JU8) Free fatty acid receptor 1 (G-protein coupled receptor 40)|
          Length = 300

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 399 RYVWASKGNPELLVTMDVVLTSGPYAGSSVTVVGRDDIGAAVRELSVVGGTGQF---RMA 229
           R  WA+ G       + ++L  GPY  S+V      D+G + R+L ++ G+       + 
Sbjct: 221 RAAWAAGG-----AFLTLLLCLGPYNASNVASFVNPDLGGSWRKLGLITGSWSVVLNPLV 275

Query: 228 TGYV 217
           TGY+
Sbjct: 276 TGYL 279



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>VGLZ_EHV1K (P32515) Glycoprotein precursor|
          Length = 383

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 131 STCTTRHGLTKTSSSRTALGWSSRTVFHSTYPVAILNCPVPPTTDSSRTAAPMSSRPTT 307
           ST TT    + +S+S +    SS T   S+ P        PPTT SS   +  +S P+T
Sbjct: 22  STTTTETTTSSSSTSGSGQSTSSGTTNSSSSPTTS-----PPTTSSSPPTSTHTSSPST 75



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>P210L_HUMAN (Q5VU65) Nuclear pore membrane glycoprotein 210-like precursor|
           (Nucleoporin 210 kDa-like)
          Length = 1888

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 402 GRYVWASKGNPELLVTMDVVLTSGPYAGSSVTVVGRD 292
           G + W S     ++VT   V+T+G   G+S TV+ RD
Sbjct: 494 GNFTWTSSNETVVIVTTKGVVTAGQVRGNS-TVLARD 529



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>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 VPLLPYYLPCRAPLLQ*CWIYVPCKCCSS 41
           +PLL   LP  A LL  CW Y  C CC +
Sbjct: 715 IPLLLLLLPLLALLLLLCWKY--CACCKA 741



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>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +1

Query: 232 HPELPRAADHRQLPHRRADVVPAHHRHGGPRVGARREHHVHGH 360
           HP  P    H   PH    +   HH H         EHH H H
Sbjct: 97  HPH-PHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHHH 138



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>L1CA1_BRARE (Q90478) Neural cell adhesion molecule L1.1 (N-CAM L1.1) (Fragment)|
          Length = 1197

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 387 ASKGNPELLVTMDVVLTSGPYAGSSVTVVGRDDIGAAVRELSVVGGTGQ 241
           +S  NP L+V       +G +    + V   +D+GAA   L+V+G +G+
Sbjct: 698 SSVSNPPLMVN-----NTGTFVSFEIKVQAVNDLGAAPEPLTVIGYSGE 741


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,055,516
Number of Sequences: 219361
Number of extensions: 1057132
Number of successful extensions: 3914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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