ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95f04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin, clone 4B10T7 Length = 336 Score = 252 bits (127), Expect = 8e-64 Identities = 127/127 (100%) Strand = Plus / Plus Query: 129 gatcaacatgcacaacgcgtcacgggttgacgaagacgtcgagctcgaggacggcgttgg 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 gatcaacatgcacaacgcgtcacgggttgacgaagacgtcgagctcgaggacggcgttgg 78 Query: 189 ggtggtcgagccggacggtcttccacagcacgtaccctgtggccatcctgaactgccccg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 ggtggtcgagccggacggtcttccacagcacgtaccctgtggccatcctgaactgccccg 138 Query: 249 tgccgcc 255 ||||||| Sbjct: 139 tgccgcc 145
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 206 bits (104), Expect = 4e-50 Identities = 232/275 (84%) Strand = Plus / Plus Query: 152 gggttgacgaagacgtcgagctcgaggacggcgttggggtggtcgagccggacggtcttc 211 ||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct: 59892 gggttgacgtagacgtcgagctcgaggatggcgttggggtggtcgaggctgaccgtcttc 59951 Query: 212 cacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagctcc 271 || || ||||| || | ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 59952 cagaggacgtagccggacgccatcctgaactcccccgtgccgccgaccaccgacagctcc 60011 Query: 272 cgcaccgccgcgccgatgtcgtcccggcccaccaccgtcacggaggaccccgcgtagggg 331 | ||||| ||| |||||||||||| || || || || || ||| || ||| | || Sbjct: 60012 ctcaccggcgccgcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacggc 60071 Query: 332 cccgacgtgagcaccacgtccatggtcacaagcagctccgggttccccttggacgcccac 391 |||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct: 60072 cccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccac 60131 Query: 392 acgtaccgnccctgcgcgcgccccacgcccgccga 426 |||||| | |||| || |||||||| ||||||| Sbjct: 60132 acgtactgccccttggcccgccccaccgccgccga 60166 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 200 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgacc 259 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 83619 cggatggtcctccacagcacgtaccctctcgccatcctgaactgccccgtgccccccacc 83678 Query: 260 accgacagctcccgcaccgccgcgccgatgtcgtc 294 |||| |||||||||||||||||||||| ||||||| Sbjct: 83679 accgtcagctcccgcaccgccgcgccggtgtcgtc 83713 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 150 acgggttgacgaagacgtcgagctcgag 177 ||||||| ||| |||||||||||||||| Sbjct: 83581 acgggttaacgtagacgtcgagctcgag 83608
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 206 bits (104), Expect = 4e-50 Identities = 232/275 (84%) Strand = Plus / Minus Query: 152 gggttgacgaagacgtcgagctcgaggacggcgttggggtggtcgagccggacggtcttc 211 ||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct: 24762596 gggttgacgtagacgtcgagctcgaggatggcgttggggtggtcgaggctgaccgtcttc 24762537 Query: 212 cacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagctcc 271 || || ||||| || | ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 24762536 cagaggacgtagccggacgccatcctgaactcccccgtgccgccgaccaccgacagctcc 24762477 Query: 272 cgcaccgccgcgccgatgtcgtcccggcccaccaccgtcacggaggaccccgcgtagggg 331 | ||||| ||| |||||||||||| || || || || || ||| || ||| | || Sbjct: 24762476 ctcaccggcgccgcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacggc 24762417 Query: 332 cccgacgtgagcaccacgtccatggtcacaagcagctccgggttccccttggacgcccac 391 |||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct: 24762416 cccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccac 24762357 Query: 392 acgtaccgnccctgcgcgcgccccacgcccgccga 426 |||||| | |||| || |||||||| ||||||| Sbjct: 24762356 acgtactgccccttggcccgccccaccgccgccga 24762322 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 200 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgacc 259 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 24738869 cggatggtcctccacagcacgtaccctctcgccatcctgaactgccccgtgccccccacc 24738810 Query: 260 accgacagctcccgcaccgccgcgccgatgtcgtc 294 |||| |||||||||||||||||||||| ||||||| Sbjct: 24738809 accgtcagctcccgcaccgccgcgccggtgtcgtc 24738775 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 acgggttgacgaagacgtcgagctcgag 177 ||||||| ||| |||||||||||||||| Sbjct: 24738907 acgggttaacgtagacgtcgagctcgag 24738880 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 250 gccgccgaccaccgacagctcccgcacc 277 |||||||||||||| |||||||| |||| Sbjct: 5919207 gccgccgaccaccggcagctccctcacc 5919180
>dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049N05, full insert sequence Length = 836 Score = 206 bits (104), Expect = 4e-50 Identities = 232/275 (84%) Strand = Plus / Minus Query: 152 gggttgacgaagacgtcgagctcgaggacggcgttggggtggtcgagccggacggtcttc 211 ||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct: 527 gggttgacgtagacgtcgagctcgaggatggcgttggggtggtcgaggctgaccgtcttc 468 Query: 212 cacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagctcc 271 || || ||||| || | ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 467 cagaggacgtagccggacgccatcctgaactcccccgtgccgccgaccaccgacagctcc 408 Query: 272 cgcaccgccgcgccgatgtcgtcccggcccaccaccgtcacggaggaccccgcgtagggg 331 | ||||| ||| |||||||||||| || || || || || ||| || ||| | || Sbjct: 407 ctcaccggcgccgcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacggc 348 Query: 332 cccgacgtgagcaccacgtccatggtcacaagcagctccgggttccccttggacgcccac 391 |||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct: 347 cccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccac 288 Query: 392 acgtaccgnccctgcgcgcgccccacgcccgccga 426 |||||| | |||| || |||||||| ||||||| Sbjct: 287 acgtactgccccttggcccgccccaccgccgccga 253
>dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D09, full insert sequence Length = 786 Score = 206 bits (104), Expect = 4e-50 Identities = 232/275 (84%) Strand = Plus / Minus Query: 152 gggttgacgaagacgtcgagctcgaggacggcgttggggtggtcgagccggacggtcttc 211 ||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct: 536 gggttgacgtagacgtcgagctcgaggatggcgttggggtggtcgaggctgaccgtcttc 477 Query: 212 cacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagctcc 271 || || ||||| || | ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 476 cagaggacgtagccggacgccatcctgaactcccccgtgccgccgaccaccgacagctcc 417 Query: 272 cgcaccgccgcgccgatgtcgtcccggcccaccaccgtcacggaggaccccgcgtagggg 331 | ||||| ||| |||||||||||| || || || || || ||| || ||| | || Sbjct: 416 ctcaccggcgccgcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacggc 357 Query: 332 cccgacgtgagcaccacgtccatggtcacaagcagctccgggttccccttggacgcccac 391 |||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct: 356 cccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccac 297 Query: 392 acgtaccgnccctgcgcgcgccccacgcccgccga 426 |||||| | |||| || |||||||| ||||||| Sbjct: 296 acgtactgccccttggcccgccccaccgccgccga 262
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 206 bits (104), Expect = 4e-50 Identities = 232/275 (84%) Strand = Plus / Minus Query: 152 gggttgacgaagacgtcgagctcgaggacggcgttggggtggtcgagccggacggtcttc 211 ||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||||| Sbjct: 25074266 gggttgacgtagacgtcgagctcgaggatggcgttggggtggtcgaggctgaccgtcttc 25074207 Query: 212 cacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagctcc 271 || || ||||| || | ||||||||||||| |||||||||||||||||||||||||||| Sbjct: 25074206 cagaggacgtagccggacgccatcctgaactcccccgtgccgccgaccaccgacagctcc 25074147 Query: 272 cgcaccgccgcgccgatgtcgtcccggcccaccaccgtcacggaggaccccgcgtagggg 331 | ||||| ||| |||||||||||| || || || || || ||| || ||| | || Sbjct: 25074146 ctcaccggcgccgcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacggc 25074087 Query: 332 cccgacgtgagcaccacgtccatggtcacaagcagctccgggttccccttggacgcccac 391 |||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct: 25074086 cccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccac 25074027 Query: 392 acgtaccgnccctgcgcgcgccccacgcccgccga 426 |||||| | |||| || |||||||| ||||||| Sbjct: 25074026 acgtactgccccttggcccgccccaccgccgccga 25073992 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 200 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgacc 259 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 25050539 cggatggtcctccacagcacgtaccctctcgccatcctgaactgccccgtgccccccacc 25050480 Query: 260 accgacagctcccgcaccgccgcgccgatgtcgtc 294 |||| |||||||||||||||||||||| ||||||| Sbjct: 25050479 accgtcagctcccgcaccgccgcgccggtgtcgtc 25050445 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 acgggttgacgaagacgtcgagctcgag 177 ||||||| ||| |||||||||||||||| Sbjct: 25050577 acgggttaacgtagacgtcgagctcgag 25050550 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 250 gccgccgaccaccgacagctcccgcacc 277 |||||||||||||| |||||||| |||| Sbjct: 5985684 gccgccgaccaccggcagctccctcacc 5985657
>dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D07, full insert sequence Length = 839 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 200 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgacc 259 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 12 cggatggtcctccacagcacgtaccctctcgccatcctgaactgccccgtgccccccacc 71 Query: 260 accgacagctcccgcaccgccgcgccgatgtcgtc 294 |||| |||||||||||||||||||||| ||||||| Sbjct: 72 accgtcagctcccgcaccgccgcgccggtgtcgtc 106
>dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E08, full insert sequence Length = 766 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Minus Query: 200 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgacc 259 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| Sbjct: 474 cggatggtcctccacagcacgtaccctctcgccatcctgaactgccccgtgccccccacc 415 Query: 260 accgacagctcccgcaccgccgcgccgatgtcgtc 294 |||| |||||||||||||||||||||| ||||||| Sbjct: 414 accgtcagctcccgcaccgccgcgccggtgtcgtc 380 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 acgggttgacgaagacgtcgagctcgag 177 ||||||| ||| |||||||||||||||| Sbjct: 512 acgggttaacgtagacgtcgagctcgag 485
>ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA Length = 958 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 437 agctccctcaccg 425
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 404001 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 404060 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 404061 agctccctcaccg 404073 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 210 tccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagct 269 ||||||||||||| || |||||||| | ||| ||||||||||||||| || || |||| Sbjct: 412064 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgacgacggagagct 412123 Query: 270 cccgca 275 |||||| Sbjct: 412124 cccgca 412129 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ccccgtgccgccgaccaccgacagctcccgcaccgccgc 282 |||||| ||||||||||||| |||||||| |||| |||| Sbjct: 373321 ccccgtcccgccgaccaccgccagctccctcacctccgc 373283 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 157 gacgaagacgtcgagctcgaggacggcgt 185 |||||||||||||||||| ||||| |||| Sbjct: 412008 gacgaagacgtcgagctccaggacagcgt 412036 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 383824 tgccgccgaccaccgccagctccc 383801
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 6165 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 6224 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 6225 agctccctcaccg 6237 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 210 tccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagct 269 ||||||||||||| || |||||||| | ||| ||||||||||||||| || || |||| Sbjct: 14228 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgacgacggagagct 14287 Query: 270 cccgca 275 |||||| Sbjct: 14288 cccgca 14293 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 157 gacgaagacgtcgagctcgaggacggcgt 185 |||||||||||||||||| ||||| |||| Sbjct: 14172 gacgaagacgtcgagctccaggacagcgt 14200
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 128239 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 128298 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 128299 agctccctcaccg 128311 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ccccgtgccgccgaccaccgacagctcccgcaccgccgc 282 |||||| ||||||||||||| |||||||| |||| |||| Sbjct: 97559 ccccgtcccgccgaccaccgccagctccctcacctccgc 97521 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 108062 tgccgccgaccaccgccagctccc 108039
>dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A02, full insert sequence Length = 957 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 493 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 434 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 433 agctccctcaccg 421
>dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C06, full insert sequence Length = 1001 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 294 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 353 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 354 agctccctcaccg 366
>dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full insert sequence Length = 958 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 206 gtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgac 265 |||||||||| |||||| || |||||||||||||||| ||||||||||| ||||| ||| Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438 Query: 266 agctcccgcaccg 278 ||||||| ||||| Sbjct: 437 agctccctcaccg 425
>ref|NM_186143.1| Oryza sativa (japonica cultivar-group), mRNA Length = 663 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 210 tccacagcacgtaccctgtggccatcctgaactgccccgtgccgccgaccaccgacagct 269 ||||||||||||| || |||||||| | ||| ||||||||||||||| || || |||| Sbjct: 526 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgacgacggagagct 467 Query: 270 cccgca 275 |||||| Sbjct: 466 cccgca 461 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 157 gacgaagacgtcgagctcgaggacggcgt 185 |||||||||||||||||| ||||| |||| Sbjct: 582 gacgaagacgtcgagctccaggacagcgt 554
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ccccgtgccgccgaccaccgacagctcccgcaccgccgc 282 |||||| ||||||||||||| |||||||| |||| |||| Sbjct: 125320 ccccgtcccgccgaccaccgccagctccctcacctccgc 125282
>dbj|AK100221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047E19, full insert sequence Length = 999 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ccccgtgccgccgaccaccgacagctcccgcaccgccgc 282 |||||| ||||||||||||| |||||||| |||| |||| Sbjct: 509 ccccgtcccgccgaccaccgccagctccctcacctccgc 471
>dbj|AK060004.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-A08, full insert sequence Length = 990 Score = 46.1 bits (23), Expect = 0.093 Identities = 35/39 (89%) Strand = Plus / Minus Query: 244 ccccgtgccgccgaccaccgacagctcccgcaccgccgc 282 |||||| ||||||||||||| |||||||| |||| |||| Sbjct: 511 ccccgtcccgccgaccaccgccagctccctcacctccgc 473
>gb|AY232358.1| Uncultured bacterium clone GN1062A34 dinitrogenase reductase (nifH) gene, partial cds Length = 327 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cgaagacgtcgagctcgaggac 180 |||||||||||||||||||||| Sbjct: 66 cgaagacgtcgagctcgaggac 87
>gb|AF325792.1|AF325792 Spirochaeta aurantia clone 2 dinitrogenase reductase (nifH) gene, partial cds Length = 327 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 159 cgaagacgtcgagctcgaggac 180 |||||||||||||||||||||| Sbjct: 66 cgaagacgtcgagctcgaggac 87
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 cgcgcgccccacgcccgccga 426 ||||||||||||||||||||| Sbjct: 3012638 cgcgcgccccacgcccgccga 3012658
>emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, complete sequence Length = 158134 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aagcagcaaaaacccttttgt 26 ||||||||||||||||||||| Sbjct: 70804 aagcagcaaaaacccttttgt 70824
>emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 in linkage group 22, complete sequence Length = 155808 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aagcagcaaaaacccttttgt 26 ||||||||||||||||||||| Sbjct: 137861 aagcagcaaaaacccttttgt 137881
>emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in linkage group 22, complete sequence Length = 169459 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 aagcagcaaaaacccttttgt 26 ||||||||||||||||||||| Sbjct: 101307 aagcagcaaaaacccttttgt 101327
>ref|XM_476383.1| Oryza sativa (japonica cultivar-group), mRNA Length = 821 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 474 tgccgccgaccaccgccagctccc 451
>ref|XM_476382.1| Oryza sativa (japonica cultivar-group), mRNA Length = 779 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 187 tgccgccgaccaccgccagctccc 210
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gacggcgttggggtggtcga 197 |||||||||||||||||||| Sbjct: 74997 gacggcgttggggtggtcga 74978
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04, complete sequence Length = 164882 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 250 gccgccgaccaccgacagctcccgcacc 277 |||||||||||||| |||||||| |||| Sbjct: 129091 gccgccgaccaccggcagctccctcacc 129064
>ref|XM_316549.2| Anopheles gambiae str. PEST ENSANGP00000004332 (ENSANGG00000003410), partial mRNA Length = 3834 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ccgccgaccaccgacagctc 270 |||||||||||||||||||| Sbjct: 1903 ccgccgaccaccgacagctc 1922
>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full insert sequence Length = 885 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 250 gccgccgaccaccgacagctcccgcacc 277 |||||||||||||| |||||||| |||| Sbjct: 519 gccgccgaccaccggcagctccctcacc 492
>dbj|AK065027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G12, full insert sequence Length = 779 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 187 tgccgccgaccaccgccagctccc 210
>dbj|AK062751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G03, full insert sequence Length = 820 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 tgccgccgaccaccgacagctccc 272 ||||||||||||||| |||||||| Sbjct: 474 tgccgccgaccaccgccagctccc 451
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ccgccgcgccgatgtcgtcc 295 |||||||||||||||||||| Sbjct: 1303774 ccgccgcgccgatgtcgtcc 1303755
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ccgcaccgccgcgccgatgtcgtc 294 |||| ||||||||||||||||||| Sbjct: 11904 ccgctccgccgcgccgatgtcgtc 11881 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,574,594 Number of Sequences: 3902068 Number of extensions: 2574594 Number of successful extensions: 51158 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50654 Number of HSP's gapped (non-prelim): 504 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
