Clone Name | rbaet95f03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009009.1| Triticum aestivum clone wdk3c.pk005.b17:fis, full insert mRNA sequence Length = 1620 Score = 83.8 bits (42), Expect = 6e-14 Identities = 54/58 (93%) Strand = Plus / Minus Query: 10 aaaagcatcacaactgcagtttattcgggattcaaaatcaccatcatttttaatccgg 67 ||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||| Sbjct: 1484 aaaagcatcacaactgcagcttattcgggattcgaaatcaccataatctttaatccgg 1427
>emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chromosome 11 Contains the 5' end of a novel gene, complete sequence Length = 191046 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Plus Query: 7 taaaaaagcatcacaactgcagtt 30 |||||||||||||||||||||||| Sbjct: 110546 taaaaaagcatcacaactgcagtt 110569
>gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, complete sequence Length = 138710 Score = 48.1 bits (24), Expect = 0.003 Identities = 24/24 (100%) Strand = Plus / Minus Query: 7 taaaaaagcatcacaactgcagtt 30 |||||||||||||||||||||||| Sbjct: 38692 taaaaaagcatcacaactgcagtt 38669
>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17, complete sequence Length = 131970 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatcaccatcatttttaat 63 |||||||||||||||||||| Sbjct: 91458 aaatcaccatcatttttaat 91439
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 40.1 bits (20), Expect = 0.78 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 attcaaaatcaccatcatttttaa 62 ||||||||||||||| |||||||| Sbjct: 46899 attcaaaatcaccattatttttaa 46922
>emb|BX649262.4| Zebrafish DNA sequence from clone DKEY-174I8 in linkage group 20, complete sequence Length = 55019 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatcaccatcatttttaat 63 |||||||||||||||||||| Sbjct: 14577 aaatcaccatcatttttaat 14558
>emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in linkage group 22, complete sequence Length = 222879 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatcaccatcatttttaat 63 |||||||||||||||||||| Sbjct: 196932 aaatcaccatcatttttaat 196913
>emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 in linkage group 22, complete sequence Length = 136724 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatcaccatcatttttaat 63 |||||||||||||||||||| Sbjct: 94877 aaatcaccatcatttttaat 94858
>emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in linkage group 17, complete sequence Length = 200306 Score = 40.1 bits (20), Expect = 0.78 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaatcaccatcatttttaat 63 |||||||||||||||||||| Sbjct: 16338 aaatcaccatcatttttaat 16319
>ref|XM_630724.1| Dictyostelium discoideum hypothetical protein (DDB0188853), partial mRNA Length = 1203 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 ttcaaaatcaccatcattt 58 ||||||||||||||||||| Sbjct: 474 ttcaaaatcaccatcattt 492
>ref|XM_525848.1| PREDICTED: Pan troglodytes similar to SULT1C3 splice variant a (LOC470467), mRNA Length = 915 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 atcaccatcatttttaatc 64 ||||||||||||||||||| Sbjct: 222 atcaccatcatttttaatc 204
>ref|XM_644468.1| Entamoeba histolytica HM-1:IMSS lipase (289.t00012) partial mRNA Length = 834 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 taaaaaagcatcacaactg 25 ||||||||||||||||||| Sbjct: 372 taaaaaagcatcacaactg 390
>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence Length = 131025 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gattcaaaatcaccatcat 56 ||||||||||||||||||| Sbjct: 38960 gattcaaaatcaccatcat 38942
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence Length = 134901 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 gattcaaaatcaccatcat 56 ||||||||||||||||||| Sbjct: 118939 gattcaaaatcaccatcat 118957
>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence Length = 203187 Score = 38.2 bits (19), Expect = 3.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 aatcaccatcatttttaat 63 ||||||||||||||||||| Sbjct: 63777 aatcaccatcatttttaat 63759 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 815,342 Number of Sequences: 3902068 Number of extensions: 815342 Number of successful extensions: 52605 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52580 Number of HSP's gapped (non-prelim): 25 length of query: 76 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 55 effective length of database: 17,151,101,840 effective search space: 943310601200 effective search space used: 943310601200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)