ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009009.1| Triticum aestivum clone wdk3c.pk005.b17:fis, full... 84 6e-14
2emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chro... 48 0.003
3gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, compl... 48 0.003
4emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 ... 40 0.78
5gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cance... 40 0.78
6emb|BX649262.4| Zebrafish DNA sequence from clone DKEY-174I8 in ... 40 0.78
7emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in ... 40 0.78
8emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 i... 40 0.78
9emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in l... 40 0.78
10ref|XM_630724.1| Dictyostelium discoideum hypothetical protein (... 38 3.1
11ref|XM_525848.1| PREDICTED: Pan troglodytes similar to SULT1C3 s... 38 3.1
12ref|XM_644468.1| Entamoeba histolytica HM-1:IMSS lipase (289.t00... 38 3.1
13gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete s... 38 3.1
14gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete s... 38 3.1
15gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome ... 38 3.1

>gb|BT009009.1| Triticum aestivum clone wdk3c.pk005.b17:fis, full insert mRNA
            sequence
          Length = 1620

 Score = 83.8 bits (42), Expect = 6e-14
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                      
Query: 10   aaaagcatcacaactgcagtttattcgggattcaaaatcaccatcatttttaatccgg 67
            ||||||||||||||||||| ||||||||||||| |||||||||| || ||||||||||
Sbjct: 1484 aaaagcatcacaactgcagcttattcgggattcgaaatcaccataatctttaatccgg 1427



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>emb|AL607146.6| Mouse DNA sequence from clone RP23-312G6 on chromosome 11 Contains the 5'
              end of a novel gene, complete sequence
          Length = 191046

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 7      taaaaaagcatcacaactgcagtt 30
              ||||||||||||||||||||||||
Sbjct: 110546 taaaaaagcatcacaactgcagtt 110569



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>gb|AC023608.3| Mus musculus chromosome 18 clone CT7-402J1, complete sequence
          Length = 138710

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 7     taaaaaagcatcacaactgcagtt 30
             ||||||||||||||||||||||||
Sbjct: 38692 taaaaaagcatcacaactgcagtt 38669



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>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17,
             complete sequence
          Length = 131970

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaatcaccatcatttttaat 63
             ||||||||||||||||||||
Sbjct: 91458 aaatcaccatcatttttaat 91439



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>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181191

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    attcaaaatcaccatcatttttaa 62
             ||||||||||||||| ||||||||
Sbjct: 46899 attcaaaatcaccattatttttaa 46922



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>emb|BX649262.4| Zebrafish DNA sequence from clone DKEY-174I8 in linkage group 20,
             complete sequence
          Length = 55019

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaatcaccatcatttttaat 63
             ||||||||||||||||||||
Sbjct: 14577 aaatcaccatcatttttaat 14558



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>emb|BX324175.6| Zebrafish DNA sequence from clone DKEY-237M7 in linkage group 22,
              complete sequence
          Length = 222879

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aaatcaccatcatttttaat 63
              ||||||||||||||||||||
Sbjct: 196932 aaatcaccatcatttttaat 196913



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>emb|BX324180.4| Zebrafish DNA sequence from clone CH211-134O13 in linkage group 22,
             complete sequence
          Length = 136724

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaatcaccatcatttttaat 63
             ||||||||||||||||||||
Sbjct: 94877 aaatcaccatcatttttaat 94858



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>emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in linkage group 17,
             complete sequence
          Length = 200306

 Score = 40.1 bits (20), Expect = 0.78
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aaatcaccatcatttttaat 63
             ||||||||||||||||||||
Sbjct: 16338 aaatcaccatcatttttaat 16319



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>ref|XM_630724.1| Dictyostelium discoideum hypothetical protein (DDB0188853), partial
           mRNA
          Length = 1203

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  ttcaaaatcaccatcattt 58
           |||||||||||||||||||
Sbjct: 474 ttcaaaatcaccatcattt 492



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>ref|XM_525848.1| PREDICTED: Pan troglodytes similar to SULT1C3 splice variant a
           (LOC470467), mRNA
          Length = 915

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 46  atcaccatcatttttaatc 64
           |||||||||||||||||||
Sbjct: 222 atcaccatcatttttaatc 204



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>ref|XM_644468.1| Entamoeba histolytica HM-1:IMSS lipase (289.t00012) partial mRNA
          Length = 834

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   taaaaaagcatcacaactg 25
           |||||||||||||||||||
Sbjct: 372 taaaaaagcatcacaactg 390



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>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence
          Length = 131025

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    gattcaaaatcaccatcat 56
             |||||||||||||||||||
Sbjct: 38960 gattcaaaatcaccatcat 38942



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>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence
          Length = 134901

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     gattcaaaatcaccatcat 56
              |||||||||||||||||||
Sbjct: 118939 gattcaaaatcaccatcat 118957



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>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence
          Length = 203187

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    aatcaccatcatttttaat 63
             |||||||||||||||||||
Sbjct: 63777 aatcaccatcatttttaat 63759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 815,342
Number of Sequences: 3902068
Number of extensions: 815342
Number of successful extensions: 52605
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52580
Number of HSP's gapped (non-prelim): 25
length of query: 76
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 55
effective length of database: 17,151,101,840
effective search space: 943310601200
effective search space used: 943310601200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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