ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95e11 |
|---|---|
| Clone Library Name | barley_pub |
>DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein| heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic 1) (MAP 1C) Length = 4644 Score = 31.6 bits (70), Expect = 0.49 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 242 VIALFHLEISS*SAWSELFWRSAYSQQEETLSSGCTTMLTWLPES 108 ++A FH I ++ L W Y E L S C T+ TWL ++ Sbjct: 4180 LLAWFHAVIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDT 4224
>COX3_OCTDO (Q35242) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) (Fragment) Length = 204 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -3 Query: 369 TGKNSWFHLLGPAPLILQAIGFAWLFFMLLQEWRDKKRAS 250 TG +SWFH G L+L GF + ++Q WRD R S Sbjct: 3 TGLSSWFHNYGNLLLML---GFLLMIMTMIQWWRDIIRES 39
>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein| heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic 1) Length = 4644 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 242 VIALFHLEISS*SAWSELFWRSAYSQQEETLSSGCTTMLTWLPES 108 ++A FH I ++ L W Y E L S C T+ TWL ++ Sbjct: 4180 LLAWFHAIIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDT 4224
>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein| heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic 1) Length = 4646 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 242 VIALFHLEISS*SAWSELFWRSAYSQQEETLSSGCTTMLTWLPES 108 ++A FH I ++ L W Y E L S C T+ TWL ++ Sbjct: 4182 LLAWFHAIIQERLRYAPLGWSKKYEFGESDLRSACDTVDTWLDDT 4226
>GH317_ARATH (Q9FZ87) Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-)| (Auxin-responsive GH3-like protein 17) (AtGH3-17) Length = 609 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 35 IRNQCEQSNWRTILNHSYPKEHQITIQVTM*ALLYSPNLGFPLVGNRLIS 184 I ++C + +W IL +PK + + VT Y P L F G L+S Sbjct: 277 IESECAEKSWEGILRRIWPKAKYVEVIVTGSMAQYIPTLEFYSGGLPLVS 326
>WECG_SHIFL (Q83IX5) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R K++ ++RY Sbjct: 206 APKIWQTLGLEWLYRLLSQPSRIKRQLRLLRY 237
>WECG_ECOLI (P27836) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R K++ ++RY Sbjct: 206 APKIWQTLGLEWLYRLLSQPSRIKRQLRLLRY 237
>WECG_ECOL6 (Q8FBP7) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R K++ ++RY Sbjct: 206 APKIWQTLGLEWLYRLLSQPSRIKRQLRLLRY 237
>WECG_ECO57 (Q8XAQ3) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R K++ ++RY Sbjct: 206 APKIWQTLGLEWLYRLLSQPSRIKRQLRLLRY 237
>GH31_ARATH (O82333) Probable indole-3-acetic acid-amido synthetase GH3.1 (EC| 6.3.2.-) (Auxin-responsive GH3-like protein 1) (AtGH3-1) Length = 590 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +2 Query: 29 KIIRNQCEQSNWRTILNHSYPKEHQITIQVTM*ALLYSPNLGF 157 + IR +C+ NW I+ +P + + VT Y P L + Sbjct: 282 EFIRRECKSDNWEKIITRIWPNTKYLDVIVTGAMAQYIPTLEY 324
>GH38_ORYSA (Q7XIN9) Probable indole-3-acetic acid-amido synthetase GH3.8 (EC| 6.3.2.-) (Auxin-responsive GH3-like protein 8) (OsGH3-8) Length = 605 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 29 KIIRNQCEQSNWRTILNHSYPKEHQITIQVTM*ALLYSPNLGF 157 K+IR +C + +W I+ +P + + VT Y P L F Sbjct: 289 KLIRAECSKGDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEF 331
>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic| region Length = 1584 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +1 Query: 100 SNHDSGNHVSIVVQPELRVSSCWE*ADLQN-----NSDQADQLLISRWK 231 S HD N S+ Q + R+S W D+++ +S+ A++LL RWK Sbjct: 826 SKHDDSNTYSLTQQLKHRISETW--VDIKSPSIPVSSEFANELLPIRWK 872
>XYN2_BACST (P45703) Endo-1,4-beta-xylanase precursor (EC 3.2.1.8) (Xylanase)| (1,4-beta-D-xylan xylanohydrolase) Length = 330 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +1 Query: 118 NHVSIVVQPELRVSSCWE*ADLQNNSDQADQLLISRWKRAITHHGSSFFITPFLQKHEEK 297 +H+S VVQ CW+ + + ++ L S W++ I G F FL HE Sbjct: 112 SHISTVVQRYKGKVYCWDVINEAVADEGSEWLRSSTWRQII---GDDFIQQAFLYAHEAD 168 Query: 298 P 300 P Sbjct: 169 P 169
>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)| Length = 1086 Score = 25.4 bits (54), Expect(2) = 6.5 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 124 VSIVVQPELRVSSCWE*ADLQNNSDQADQLLISRWKRAITHHGSSFFITPFLQ 282 VS +QP+L Q S Q QLL S+ ++ + H +SF + F+Q Sbjct: 666 VSSSLQPQLSALQ-------QTQSHQLQQLLSSQNQQPLAHGNNSFPASTFMQ 711 Score = 20.8 bits (42), Expect(2) = 6.5 Identities = 9/34 (26%), Positives = 19/34 (55%) Frame = +2 Query: 14 MKGTLKIIRNQCEQSNWRTILNHSYPKEHQITIQ 115 M + +++RNQ EQS+ ++ + Q+ +Q Sbjct: 601 MHNSSQLLRNQQEQSSLHSLQQNLSQNPQQLQMQ 634
>UDB28_HUMAN (Q9BY64) UDP-glucuronosyltransferase 2B28 precursor (EC 2.4.1.17)| (UDPGT) Length = 529 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = +2 Query: 50 EQSNW---RTILNHSYPKEHQITIQVTM*ALLYSPNLGFPL 163 E S+W +TIL + H++T+ + ++L+ PN F L Sbjct: 32 EYSHWMNMKTILKELVQRGHEVTVLASSASILFDPNDAFTL 72
>S13A3_MOUSE (Q91Y63) Solute carrier family 13 member 3 (Sodium-dependent| high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (mNaDC3) Length = 600 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Frame = -3 Query: 357 SWFHLLGPAPLILQAIGFAWLFF----MLLQEWRDKK 259 SWF P L+ +G+ W+ F M + WR KK Sbjct: 275 SWFIFAFPLMLLFLLVGWLWISFLYGGMSWRSWRKKK 311
>WN10A_HUMAN (Q9GZT5) Protein Wnt-10a precursor| Length = 417 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +3 Query: 243 ASWKLFFYHAILAKA*RKAMQIQLLEVSMGPDPRGETNCSCLS 371 A W L F+ +LA A ++ +L++ + P+P N CL+ Sbjct: 21 ALWVLLFFLLLLAAAMPRSAPNDILDLRLPPEPVLNANTVCLT 63
>WECG_SALTY (P37457) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R ++ ++RY Sbjct: 206 APKIWQNLGLEWLYRLLSQPRRITRQMRLLRY 237
>WECG_SALTI (Q8Z397) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R ++ ++RY Sbjct: 206 APKIWQNLGLEWLYRLLSQPKRITRQMRLLRY 237
>WECG_SALPA (Q5PKK7) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R ++ ++RY Sbjct: 206 APKIWQNLGLEWLYRLLSQPKRITRQMRLLRY 237
>WECG_SALCH (Q57HS2) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 246 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 AP I Q +G WL+ +L Q R ++ ++RY Sbjct: 206 APKIWQNLGLEWLYRLLSQPKRITRQMRLLRY 237
>GH31_ORYSA (Q8LQM5) Probable indole-3-acetic acid-amido synthetase GH3.1 (EC| 6.3.2.-) (Auxin-responsive GH3-like protein 1) (OsGH3-1) Length = 610 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +2 Query: 35 IRNQCEQSNWRTILNHSYPKEHQITIQVTM*ALLYSPNLGF 157 I ++C +++W I+ +P+ I + VT Y P L F Sbjct: 286 IEDECARASWEGIIRRLWPRTKYIDVIVTGTMSQYIPTLEF 326
>WECG_ERWCT (Q6CZF2) Probable UDP-N-acetyl-D-mannosaminuronic acid transferase| (EC 2.4.1.-) (UDP-ManNAcA transferase) Length = 249 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 333 APLILQAIGFAWLFFMLLQEWRDKKRASMMRY 238 APL+ Q +G WL+ +L Q R ++ +++Y Sbjct: 209 APLVWQNLGLEWLYRLLSQPSRIFRQLRLLKY 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,905,254 Number of Sequences: 219361 Number of extensions: 1107087 Number of successful extensions: 2337 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2337 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
