>MED15_YEAST (P19659) RNA polymerase II mediator complex subunit 15 (Galactose|
           metabolism protein 11) (Basal expression activator
           protein 1) (Autonomous replication regulatory protein 3)
           (Defective silencing suppressor protein 4) (Ty insertion
           suppressor
          Length = 1081

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = -3

Query: 402 HQELVEKVRIEAEPLHDLFQKHNDMSGLP----VNDDLDIPESVGLSTP 268
           HQ+L+ K R++ +      Q +N+ +GLP    +N++++IP+   +  P
Sbjct: 223 HQQLLFKARLQQQQAQAQAQANNNNNGLPQNGNINNNINIPQQQQMQPP 271

>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and|
            sushi multiple domains protein 1)
          Length = 3565

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 251  FTDDGWGVDSPTDSGMSRSSFTGRPDI 331
            F +D WG+D    SG+ R  FT + DI
Sbjct: 3429 FENDNWGLDGYVSSGLERGGFTFQGDI 3455

>SPSG_BACSU (P39627) Spore coat polysaccharide biosynthesis protein spsG|
          Length = 339

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 414 SRACHQELVEKVRIEAEPLHDLFQKHNDMSGLPVNDDLDI 295
           S + HQE V + RIE +P + + ++ NDM+GL    D  I
Sbjct: 203 SASPHQEAVRR-RIEKKPQYKMIEQTNDMAGLMKQADAAI 241

>LIMK2_HUMAN (P53671) LIM domain kinase 2 (EC 2.7.11.1) (LIMK-2)|
          Length = 638

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 207 ASLCCALPSLNRPAFSRTMAGEWTAPLILGCQGHHLPAGL 326
           A++CC L   +RPAFS+         L LG  G  LPA L
Sbjct: 580 AAICCRLEPESRPAFSKLEDSFEALSLYLGELGIPLPAEL 619

>CSMD1_MOUSE (Q923L3) CUB and sushi domain-containing protein 1 precursor (CUB and|
            sushi multiple domains protein 1)
          Length = 3564

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 251  FTDDGWGVDSPTDSGMSRSSFTGRPDI 331
            F +D WG+D    SG+ R  F+ + DI
Sbjct: 3428 FENDNWGLDGYVSSGLERGGFSFQGDI 3454

>CAR15_MOUSE (Q8K3Z0) Caspase recruitment domain-containing protein 15 (Nod2|
           protein)
          Length = 1020

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -2

Query: 298 HPRISGAVHSPAIVREKAGRFKLGKAQHKEAGFVSQAGCPSE*IAMLPIYIYRERA 131
           HP      H PAIVR      +      +E GF+SQ  C       LPI+   +RA
Sbjct: 109 HPTRDLQSHRPAIVRRLYNHVEAMLELAREGGFLSQYECEE---IRLPIFTSSQRA 161

>ZN564_HUMAN (Q8TBZ8) Zinc finger protein 564|
          Length = 553

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 377 GSKPSRCTTCSRSITICQAC-R*MMTLTSQNQWGCP 273
           G KP +C  C ++ + CQ+  R   T T +  + CP
Sbjct: 137 GEKPYKCKQCGKAFSSCQSFRRHERTHTGEKPYACP 172

>SLT11_CANAL (Q5A5N5) Pre-mRNA-splicing factor SLT11|
          Length = 303

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 413 PVLVTRSWWRK*GSKPSRCTTCSRSITICQAC 318
           P  + R   RK G+K   C TC+R+   CQ+C
Sbjct: 36  PYTIYRWGNRKQGNKTIICITCARARHCCQSC 67

>SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein CG13030 (EC|
           6.3.2.-)
          Length = 351

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 359 CTTCSRSITICQACR*MMT 303
           C+TC   +TIC  CR  MT
Sbjct: 127 CSTCRSKLTICPVCRVFMT 145

>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8|
          Length = 743

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 402 HQELVEKVRIEAEPLHDLFQKHNDMSGLPVNDDLDIP 292
           H+E + ++  E + L       N  SGLPV D LD P
Sbjct: 44  HEETINRLSAENQELKRRLSLLNRPSGLPVEDKLDGP 80

>BHLH3_HUMAN (Q9C0J9) Class B basic helix-loop-helix protein 3 (bHLHB3)|
           (Differentially expressed in chondrocytes protein 2)
           (hDEC2) (Enhancer-of-split and hairy-related protein 1)
           (SHARP-1)
          Length = 482

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/51 (39%), Positives = 22/51 (43%)
 Frame = -2

Query: 418 SFPCLSPGAGGESEDRSRAAARLVPEA*RYVRPAGK**P*HPRISGAVHSP 266
           +FPCLS       E    AAA L+P     V P G   P HP   G  H P
Sbjct: 411 AFPCLSSVLSPPPEKAGAAAATLLPHE---VAPLGAPHPQHPH--GRTHLP 456


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,186,194
Number of Sequences: 219361
Number of extensions: 1183574
Number of successful extensions: 3570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)