ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VNUA_PRVKA (P33485) Probable nuclear antigen 33 0.44
2CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor 32 0.57
3ATPG_CORDI (Q6NHT0) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 31 1.7
4CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp... 31 1.7
5DEAD_KLEPN (P33906) Cold-shock DEAD box protein A (EC 3.6.1.-) (... 30 2.8
6CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor 30 2.8
7DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) 30 2.8
8HLYAC_ECOLI (P09983) Hemolysin, chromosomal 30 2.8
9HLYAP_ECOLI (P08715) Hemolysin, plasmid 30 2.8
10CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain... 30 3.7
11CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor 30 3.7
12CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long... 30 3.7
13DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A... 29 4.8
14CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment) 29 4.8
15HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn... 29 4.8
16AVEN_MOUSE (Q9D9K3) Cell death regulator Aven 29 4.8
17HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (... 29 4.8
18FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-... 29 4.8
19HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.... 29 6.3
20CA077_MOUSE (Q9CY57) Protein C1orf77 homolog 29 6.3
21AAM1_RHOSH (Q9JN46) Putative glycosidase (EC 3.2.1.-) (Fragment) 29 6.3
22TIG_STRR6 (Q8DR29) Trigger factor (TF) 29 6.3
23TIG_STRPN (Q97SG9) Trigger factor (TF) 29 6.3
24CA077_RAT (Q498T2) Protein C1orf77 homolog 29 6.3
25CA077_HUMAN (Q9Y3Y2) Protein C1orf77 29 6.3
26CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog 29 6.3
27ASTD_ECOLI (P76217) Succinylglutamic semialdehyde dehydrogenase ... 29 6.3
28CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta... 29 6.3
29DEAD_ECO57 (Q8XA87) Cold-shock DEAD box protein A (EC 3.6.1.-) (... 28 8.2
30CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment) 28 8.2
31CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor 28 8.2
32HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (... 28 8.2
33CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor 28 8.2
34CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor 28 8.2
35PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2 28 8.2
36HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (... 28 8.2
37CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End... 28 8.2

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 24/48 (50%), Positives = 25/48 (52%)
 Frame = -2

Query: 445  VAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRR 302
            V VG A LP      RG  GLR  +GR   G  G GG R P GRG RR
Sbjct: 1374 VVVGGAALPA-----RGPGGLRG-RGRGGRGGGGGGGGRGPRGRGGRR 1415



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>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 436  GAAGLPRAPRDLRGDRGLRAAQGRV-RSGELGEGGRRQPVG 317
            G  GLP    D+RGD+G +  +G     GE GE G   P G
Sbjct: 1213 GQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAG 1253



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>ATPG_CORDI (Q6NHT0) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 325

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 384 YVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNG--KLKDGYNDD 211
           Y + +   VA  W        W+E +DV    +D       GF A  NG  + +DG N D
Sbjct: 125 YYKFRGQEVAGAWTGFSQDPSWEETHDVRRHLID-------GFNASSNGTARYRDGLNTD 177

Query: 210 YFVQILG 190
              +I G
Sbjct: 178 EGQEIQG 184



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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
 Frame = -2

Query: 436  GAAGLPRAPRDLRGDRGLRAAQG----------RVRSGELGEGGRRQPVG-RGIRRDGQV 290
            G  GL RAP   RG+ G + A+G            R G +G+ G R P G  G      +
Sbjct: 1170 GETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGL 1229

Query: 289  PGLLRLAQARVRG 251
            PG +   Q   RG
Sbjct: 1230 PGAIIPGQTGNRG 1242



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>DEAD_KLEPN (P33906) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent|
           RNA helicase deaD)
          Length = 642

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
 Frame = -2

Query: 421 PRAPRDLRGDR--GLRAAQGRVRSGELGEGGRRQPVGR-------GIRRDGQVPG 284
           PR  R   G+R  G R   G  R G  G GG R+  GR       G RR+G+ PG
Sbjct: 566 PRTERRGGGERREGGRGFGGERREGGRGFGGERREGGRGEGRRFSGERREGRAPG 620



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>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 448 RVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG-RGIRRDGQ 293
           R   G  G P  PR  +GDRG + A G    G  G+ G + P G  G  +DGQ
Sbjct: 583 RGPTGELGDP-GPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQ 634



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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/40 (47%), Positives = 20/40 (50%)
 Frame = -2

Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG 317
           GA G P AP    GD GL A    V+ GE G  G   PVG
Sbjct: 193 GAPGKPGAP-GAPGDEGLPAVCEPVQKGEPGSTGEPGPVG 231



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>HLYAC_ECOLI (P09983) Hemolysin, chromosomal|
          Length = 1023

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -3

Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220
           + + ++V  K   V A W K+ G + ++ GY          D+R   F+ E N K+   Y
Sbjct: 414 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 462

Query: 219 NDDYFVQILGTSADQLWN 166
           N +Y V+       Q W+
Sbjct: 463 NKEYSVERSVLITQQHWD 480



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>HLYAP_ECOLI (P08715) Hemolysin, plasmid|
          Length = 1024

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -3

Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220
           + + ++V  K   V A W K+ G + ++ GY          D+R   F+ E N K+   Y
Sbjct: 415 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 463

Query: 219 NDDYFVQILGTSADQLWN 166
           N +Y V+       Q W+
Sbjct: 464 NKEYSVERSVLITQQHWD 481



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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 436 GAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGGRRQPVG 317
           G AG  + PR  RGD+G R A G R R GE G  G   P G
Sbjct: 57  GPAG-EQGPRGDRGDKGERGAPGPRGRDGEPGTPGNPGPPG 96



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>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 421 PRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGR-GIRRDGQVPG 284
           PR P   RGD GL+   G  R GE GE     P G  G R    VPG
Sbjct: 532 PRGPEGGRGDFGLKGEPG--RKGEKGEPADPGPPGEPGPRGPRGVPG 576



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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 412  PRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGR 314
            PR L+G+RG++ A G    GE G+ G   P GR
Sbjct: 2621 PRGLKGERGVKGACG--LDGEKGDKGEAGPPGR 2651



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>DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2286

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 54   CSNTSILLVYQYIDVDRYTCMRCNMKRISPGST 152
            C N  +++V  YI V  Y CM+  ++R +PGST
Sbjct: 1992 CQNYFLMIVSAYI-VAVYHCMKDGLRRSAPGST 2023



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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = -2

Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG 317
           GA G P  PR  +G +GL  AQG    GE G+ G R  VG
Sbjct: 460 GARG-PPGPRGQQGFQGLAGAQG--TPGEAGKTGERGAVG 496



 Score = 28.5 bits (62), Expect = 8.2
 Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 448 RVAVGAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGG 335
           R A G  G  R PR L G RGLR A G R  +G  GE G
Sbjct: 669 RGATGKQGA-RGPRGLAGKRGLRGAGGSRGETGAQGEIG 706



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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = -2

Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272
           AR   GA G  +  R  RG RG R  +G    G+    G  QP  +  + + Q  G   +
Sbjct: 442 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPI 500

Query: 271 AQARVRGGD 245
           AQ  ++GGD
Sbjct: 501 AQQPLQGGD 509



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>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven|
          Length = 342

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
 Frame = -2

Query: 418 RAPRDLRGDRGLRAAQGR-------------VRSGELGEGGRRQPVGRGIRRDGQVPGLL 278
           +A R  RG RG R  + R             +  G  G+GG R+  GRG RR G+  G L
Sbjct: 2   QAERGARGGRGRRGGRERPGGDREPVGAATALARGGCGDGGGRRGRGRGFRR-GRGGGGL 60

Query: 277 RLA--QARVRGGDEXXXXXXXXXXXXXADPRDERG 179
           R    +   RGG                +  DE+G
Sbjct: 61  RGGRWEPGGRGGGASTRVEEDSDSETYGEENDEQG 95



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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = -2

Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272
           AR   GA G  +  R  RG RG R  +G    G+    G  QP  +  + + Q  G   +
Sbjct: 532 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPI 590

Query: 271 AQARVRGGD 245
           AQ  ++GGD
Sbjct: 591 AQQPLQGGD 599



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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = -2

Query: 442 AVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPV---GRGIRRDGQVPGLLRL 272
           A GA G P       GDRG     G    G    GG  QP    G GIR+D     + R 
Sbjct: 23  AAGAGGGPPPGPPGAGDRGGGGPGGGGPGGGGASGGPSQPPGGGGPGIRKDAFADAVQRA 82

Query: 271 AQARVR-GGD 245
            Q   + GGD
Sbjct: 83  RQIAAKIGGD 92



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>HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 349

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 264 PGFVAEMNGKLKDGYNDDYFVQILGTSA 181
           P  + EM+ K++D YN D   Q+LGT+A
Sbjct: 223 PALIEEMD-KVRDSYNLDRLAQVLGTAA 249



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>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog|
          Length = 249

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248
           LRG R +    G  R G  G GG  R  +GRG    G + G  R    R RGG
Sbjct: 140 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 192



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>AAM1_RHOSH (Q9JN46) Putative glycosidase (EC 3.2.1.-) (Fragment)|
          Length = 678

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -2

Query: 403 LRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARV 257
           +R  R LRA +G     E    G     G   RRDG    L+RLA ARV
Sbjct: 46  MRPARALRAPKGP--DSEANRQGVAAATGAQDRRDGGEEALMRLADARV 92



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>TIG_STRR6 (Q8DR29) Trigger factor (TF)|
          Length = 427

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151
           V E  G L + G N D + QI GT+ + L N Y+A+
Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353



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>TIG_STRPN (Q97SG9) Trigger factor (TF)|
          Length = 427

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151
           V E  G L + G N D + QI GT+ + L N Y+A+
Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353



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>CA077_RAT (Q498T2) Protein C1orf77 homolog|
          Length = 248

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248
           LRG R +    G  R G  G GG  R  +GRG    G + G  R    R RGG
Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191



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>CA077_HUMAN (Q9Y3Y2) Protein C1orf77|
          Length = 248

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248
           LRG R +    G  R G  G GG  R  +GRG    G + G  R    R RGG
Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191



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>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog|
          Length = 248

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248
           LRG R +    G  R G  G GG  R  +GRG    G + G  R    R RGG
Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191



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>ASTD_ECOLI (P76217) Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.-)|
          Length = 492

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = -3

Query: 441 QWGLQDYHEHHGIFEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKP 262
           +W    + E H + E  A  +      + A   +E G  RW+   +VTA       S K 
Sbjct: 52  RWARLSFAERHAVVERFAALLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKA 111

Query: 261 GFV--AEMNGKLKDG 223
             V   E   ++ DG
Sbjct: 112 YHVRTGEQRSEMPDG 126



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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
 Frame = -2

Query: 442  AVGAAGLP--------RAPRDLRGDRGLRAAQGRV-RSGELGEGGRRQPVG-RGIRRDGQ 293
            AVGA G P          P   +GDRG   AQG +  SG  G  G + P G RG + +  
Sbjct: 994  AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053

Query: 292  VPG 284
             PG
Sbjct: 1054 EPG 1056



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -2

Query: 436 GAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQAR 260
           G AG  + PR  RGD+G + A G R R GE G  G   P G         PGL     A+
Sbjct: 57  GPAG-EQGPRGDRGDKGEKGAPGPRGRDGEPGTLGNPGPPGP--PGPPGPPGLGGNFAAQ 113

Query: 259 VRGG-DEXXXXXXXXXXXXXADPRDERGP 176
           + GG DE               P   RGP
Sbjct: 114 MAGGFDEKAGGAQLGVMQGPMGPMGPRGP 142



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>DEAD_ECO57 (Q8XA87) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent|
           RNA helicase deaD)
          Length = 628

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245
           RG  G R   GR  SGE  EGGR    GR   G RR+G+ P        R  GGD
Sbjct: 575 RGFSGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627



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>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)|
          Length = 325

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 21/67 (31%)
 Frame = -2

Query: 448 RVAVGAAGLPRAP--------------------RDLRGDRGLRAAQG-RVRSGELGEGGR 332
           R   GA+GLP  P                    R L G +G   A G R   G+LGE G 
Sbjct: 187 RPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 246

Query: 331 RQPVGRG 311
           R P GRG
Sbjct: 247 RGPPGRG 253



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>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor|
          Length = 1028

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 421 PRAPRDLRGDRGLRAAQGRVRS-GELGEGGRRQPVG-RGIRRDGQVPG 284
           PR PR   G+ G +  QGR    G  G+ G   P+G +G R D   PG
Sbjct: 438 PRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPG 485



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>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRD 299
           G  G P  PR     RGLR  +G       G GG R P  RG   D
Sbjct: 92  GRRGPPPPPRSRGPPRGLRGGRG-------GSGGTRGPPSRGGHMD 130



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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 21/67 (31%)
 Frame = -2

Query: 448 RVAVGAAGLPRAP--------------------RDLRGDRGLRAAQG-RVRSGELGEGGR 332
           R   GA+GLP  P                    R L G +G   A G R   G+LGE G 
Sbjct: 783 RPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842

Query: 331 RQPVGRG 311
           R P GRG
Sbjct: 843 RGPPGRG 849



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>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
 Frame = -2

Query: 418  RAPRDLRGDRGLRAAQG-----------RVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272
            +  R  RGDRGLR   G           R + GE+G+ G   P G    + GQ  G+ R 
Sbjct: 2147 KGERGERGDRGLRGDPGESGADNTQRGTRGQKGEIGQMGEPGPAG----QRGQDGGVGRK 2202

Query: 271  AQARVRG 251
              A  RG
Sbjct: 2203 GMAGRRG 2209



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>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2|
          Length = 1464

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
 Frame = -3

Query: 402  FEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDG 223
            FEGI    R+K GY  A W+ E      ++   V     D+CD  +   + + N  L   
Sbjct: 1115 FEGIKGVSRIKDGYNPATWMLEVSTISQEQALGV-----DFCDIYRKSELFQRNKAL--- 1166

Query: 222  YNDDYFVQILGT---SADQLWNDYKAKYSQG*SVSCCIACM 109
                  +Q L T    + +L+  +  KYS    ++ C+AC+
Sbjct: 1167 ------IQELSTPPPGSSELY--FPTKYSLS-FLNQCLACL 1198



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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = -2

Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272
           AR   GA G  +  R  RG RG R  +G    G+    G  QP  +  + + Q  G   +
Sbjct: 532 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDTKRRQTNNQNWGSQPI 590

Query: 271 AQARVRGGD 245
           AQ  ++GGD
Sbjct: 591 AQQPLQGGD 599



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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = -2

Query: 436 GAAGLP--RAPRDLRGDRGLRAAQGRV------RSGELGEGGRRQPVGR-GIRRDGQVPG 284
           GAAG+P  + P   +G+ GLR   G +        G+ G  G R PVG  G+  D   PG
Sbjct: 280 GAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKPGPKGDRGPVGAPGLLGDRGEPG 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,227,394
Number of Sequences: 219361
Number of extensions: 948247
Number of successful extensions: 2931
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 2842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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