Clone Name | rbaet95e07 |
---|---|
Clone Library Name | barley_pub |
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 32.7 bits (73), Expect = 0.44 Identities = 24/48 (50%), Positives = 25/48 (52%) Frame = -2 Query: 445 VAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRR 302 V VG A LP RG GLR +GR G G GG R P GRG RR Sbjct: 1374 VVVGGAALPA-----RGPGGLRG-RGRGGRGGGGGGGGRGPRGRGGRR 1415
>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor| Length = 1775 Score = 32.3 bits (72), Expect = 0.57 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRV-RSGELGEGGRRQPVG 317 G GLP D+RGD+G + +G GE GE G P G Sbjct: 1213 GQPGLPATVPDIRGDKGSQGERGYTGEKGEQGERGLTGPAG 1253
>ATPG_CORDI (Q6NHT0) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 325 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = -3 Query: 384 YVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNG--KLKDGYNDD 211 Y + + VA W W+E +DV +D GF A NG + +DG N D Sbjct: 125 YYKFRGQEVAGAWTGFSQDPSWEETHDVRRHLID-------GFNASSNGTARYRDGLNTD 177 Query: 210 YFVQILG 190 +I G Sbjct: 178 EGQEIQG 184
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 1.7 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 11/73 (15%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQG----------RVRSGELGEGGRRQPVG-RGIRRDGQV 290 G GL RAP RG+ G + A+G R G +G+ G R P G G + Sbjct: 1170 GETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGL 1229 Query: 289 PGLLRLAQARVRG 251 PG + Q RG Sbjct: 1230 PGAIIPGQTGNRG 1242
>DEAD_KLEPN (P33906) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 642 Score = 30.0 bits (66), Expect = 2.8 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 9/55 (16%) Frame = -2 Query: 421 PRAPRDLRGDR--GLRAAQGRVRSGELGEGGRRQPVGR-------GIRRDGQVPG 284 PR R G+R G R G R G G GG R+ GR G RR+G+ PG Sbjct: 566 PRTERRGGGERREGGRGFGGERREGGRGFGGERREGGRGEGRRFSGERREGRAPG 620
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -2 Query: 448 RVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG-RGIRRDGQ 293 R G G P PR +GDRG + A G G G+ G + P G G +DGQ Sbjct: 583 RGPTGELGDP-GPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQ 634
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/40 (47%), Positives = 20/40 (50%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG 317 GA G P AP GD GL A V+ GE G G PVG Sbjct: 193 GAPGKPGAP-GAPGDEGLPAVCEPVQKGEPGSTGEPGPVG 231
>HLYAC_ECOLI (P09983) Hemolysin, chromosomal| Length = 1023 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -3 Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220 + + ++V K V A W K+ G + ++ GY D+R F+ E N K+ Y Sbjct: 414 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 462 Query: 219 NDDYFVQILGTSADQLWN 166 N +Y V+ Q W+ Sbjct: 463 NKEYSVERSVLITQQHWD 480
>HLYAP_ECOLI (P08715) Hemolysin, plasmid| Length = 1024 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -3 Query: 399 EGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGY 220 + + ++V K V A W K+ G + ++ GY D+R F+ E N K+ Y Sbjct: 415 QAMFEHVASKMADVIAEWEKKHGKNYFENGY----------DARHAAFL-EDNFKILSQY 463 Query: 219 NDDYFVQILGTSADQLWN 166 N +Y V+ Q W+ Sbjct: 464 NKEYSVERSVLITQQHWD 481
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 29.6 bits (65), Expect = 3.7 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGGRRQPVG 317 G AG + PR RGD+G R A G R R GE G G P G Sbjct: 57 GPAG-EQGPRGDRGDKGERGAPGPRGRDGEPGTPGNPGPPG 96
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 29.6 bits (65), Expect = 3.7 Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -2 Query: 421 PRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGR-GIRRDGQVPG 284 PR P RGD GL+ G R GE GE P G G R VPG Sbjct: 532 PRGPEGGRGDFGLKGEPG--RKGEKGEPADPGPPGEPGPRGPRGVPG 576
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 29.6 bits (65), Expect = 3.7 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -2 Query: 412 PRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGR 314 PR L+G+RG++ A G GE G+ G P GR Sbjct: 2621 PRGLKGERGVKGACG--LDGEKGDKGEAGPPGR 2651
>DPOE1_HUMAN (Q07864) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2286 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 54 CSNTSILLVYQYIDVDRYTCMRCNMKRISPGST 152 C N +++V YI V Y CM+ ++R +PGST Sbjct: 1992 CQNYFLMIVSAYI-VAVYHCMKDGLRRSAPGST 2023
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVG 317 GA G P PR +G +GL AQG GE G+ G R VG Sbjct: 460 GARG-PPGPRGQQGFQGLAGAQG--TPGEAGKTGERGAVG 496 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -2 Query: 448 RVAVGAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGG 335 R A G G R PR L G RGLR A G R +G GE G Sbjct: 669 RGATGKQGA-RGPRGLAGKRGLRGAGGSRGETGAQGEIG 706
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.3 bits (64), Expect = 4.8 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = -2 Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272 AR GA G + R RG RG R +G G+ G QP + + + Q G + Sbjct: 442 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPI 500 Query: 271 AQARVRGGD 245 AQ ++GGD Sbjct: 501 AQQPLQGGD 509
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 29.3 bits (64), Expect = 4.8 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 15/95 (15%) Frame = -2 Query: 418 RAPRDLRGDRGLRAAQGR-------------VRSGELGEGGRRQPVGRGIRRDGQVPGLL 278 +A R RG RG R + R + G G+GG R+ GRG RR G+ G L Sbjct: 2 QAERGARGGRGRRGGRERPGGDREPVGAATALARGGCGDGGGRRGRGRGFRR-GRGGGGL 60 Query: 277 RLA--QARVRGGDEXXXXXXXXXXXXXADPRDERG 179 R + RGG + DE+G Sbjct: 61 RGGRWEPGGRGGGASTRVEEDSDSETYGEENDEQG 95
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 29.3 bits (64), Expect = 4.8 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = -2 Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272 AR GA G + R RG RG R +G G+ G QP + + + Q G + Sbjct: 532 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPI 590 Query: 271 AQARVRGGD 245 AQ ++GGD Sbjct: 591 AQQPLQGGD 599
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 29.3 bits (64), Expect = 4.8 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Frame = -2 Query: 442 AVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPV---GRGIRRDGQVPGLLRL 272 A GA G P GDRG G G GG QP G GIR+D + R Sbjct: 23 AAGAGGGPPPGPPGAGDRGGGGPGGGGPGGGGASGGPSQPPGGGGPGIRKDAFADAVQRA 82 Query: 271 AQARVR-GGD 245 Q + GGD Sbjct: 83 RQIAAKIGGD 92
>HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 349 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -3 Query: 264 PGFVAEMNGKLKDGYNDDYFVQILGTSA 181 P + EM+ K++D YN D Q+LGT+A Sbjct: 223 PALIEEMD-KVRDSYNLDRLAQVLGTAA 249
>CA077_MOUSE (Q9CY57) Protein C1orf77 homolog| Length = 249 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 140 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 192
>AAM1_RHOSH (Q9JN46) Putative glycosidase (EC 3.2.1.-) (Fragment)| Length = 678 Score = 28.9 bits (63), Expect = 6.3 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = -2 Query: 403 LRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQARV 257 +R R LRA +G E G G RRDG L+RLA ARV Sbjct: 46 MRPARALRAPKGP--DSEANRQGVAAATGAQDRRDGGEEALMRLADARV 92
>TIG_STRR6 (Q8DR29) Trigger factor (TF)| Length = 427 Score = 28.9 bits (63), Expect = 6.3 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -3 Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151 V E G L + G N D + QI GT+ + L N Y+A+ Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353
>TIG_STRPN (Q97SG9) Trigger factor (TF)| Length = 427 Score = 28.9 bits (63), Expect = 6.3 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = -3 Query: 255 VAEMNGKL-KDGYNDDYFVQILGTSADQLWNDYKAK 151 V E G L + G N D + QI GT+ + L N Y+A+ Sbjct: 318 VNEFLGNLQRQGINPDMYFQITGTTQEDLHNQYQAE 353
>CA077_RAT (Q498T2) Protein C1orf77 homolog| Length = 248 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>CA077_HUMAN (Q9Y3Y2) Protein C1orf77| Length = 248 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>CA077_BOVIN (Q3SYW9) Protein C1orf77 homolog| Length = 248 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 403 LRGDRGLRAAQGRVRSGELGEGG-RRQPVGRGIRRDGQVPGLLRLAQARVRGG 248 LRG R + G R G G GG R +GRG G + G R R RGG Sbjct: 139 LRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGG 191
>ASTD_ECOLI (P76217) Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.-)| Length = 492 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Frame = -3 Query: 441 QWGLQDYHEHHGIFEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKP 262 +W + E H + E A + + A +E G RW+ +VTA S K Sbjct: 52 RWARLSFAERHAVVERFAALLESNKAELTAIIARETGKPRWEAATEVTAMINKIAISIKA 111 Query: 261 GFV--AEMNGKLKDG 223 V E ++ DG Sbjct: 112 YHVRTGEQRSEMPDG 126
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 28.9 bits (63), Expect = 6.3 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 10/63 (15%) Frame = -2 Query: 442 AVGAAGLP--------RAPRDLRGDRGLRAAQGRV-RSGELGEGGRRQPVG-RGIRRDGQ 293 AVGA G P P +GDRG AQG + SG G G + P G RG + + Sbjct: 994 AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG 1053 Query: 292 VPG 284 PG Sbjct: 1054 EPG 1056 Score = 28.9 bits (63), Expect = 6.3 Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQG-RVRSGELGEGGRRQPVGRGIRRDGQVPGLLRLAQAR 260 G AG + PR RGD+G + A G R R GE G G P G PGL A+ Sbjct: 57 GPAG-EQGPRGDRGDKGEKGAPGPRGRDGEPGTLGNPGPPGP--PGPPGPPGLGGNFAAQ 113 Query: 259 VRGG-DEXXXXXXXXXXXXXADPRDERGP 176 + GG DE P RGP Sbjct: 114 MAGGFDEKAGGAQLGVMQGPMGPMGPRGP 142
>DEAD_ECO57 (Q8XA87) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent| RNA helicase deaD) Length = 628 Score = 28.5 bits (62), Expect = 8.2 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -2 Query: 400 RGDRGLRAAQGRVRSGELGEGGRRQPVGR---GIRRDGQVPGLLRLAQARVRGGD 245 RG G R GR SGE EGGR GR G RR+G+ P R GGD Sbjct: 575 RGFSGERREGGRNFSGERREGGRGD--GRRFSGERREGRAPRRDDSTGRRRFGGD 627
>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)| Length = 325 Score = 28.5 bits (62), Expect = 8.2 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 21/67 (31%) Frame = -2 Query: 448 RVAVGAAGLPRAP--------------------RDLRGDRGLRAAQG-RVRSGELGEGGR 332 R GA+GLP P R L G +G A G R G+LGE G Sbjct: 187 RPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 246 Query: 331 RQPVGRG 311 R P GRG Sbjct: 247 RGPPGRG 253
>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor| Length = 1028 Score = 28.5 bits (62), Expect = 8.2 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -2 Query: 421 PRAPRDLRGDRGLRAAQGRVRS-GELGEGGRRQPVG-RGIRRDGQVPG 284 PR PR G+ G + QGR G G+ G P+G +G R D PG Sbjct: 438 PRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPG 485
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 28.5 bits (62), Expect = 8.2 Identities = 18/46 (39%), Positives = 19/46 (41%) Frame = -2 Query: 436 GAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRD 299 G G P PR RGLR +G G GG R P RG D Sbjct: 92 GRRGPPPPPRSRGPPRGLRGGRG-------GSGGTRGPPSRGGHMD 130
>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 28.5 bits (62), Expect = 8.2 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 21/67 (31%) Frame = -2 Query: 448 RVAVGAAGLPRAP--------------------RDLRGDRGLRAAQG-RVRSGELGEGGR 332 R GA+GLP P R L G +G A G R G+LGE G Sbjct: 783 RPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842 Query: 331 RQPVGRG 311 R P GRG Sbjct: 843 RGPPGRG 849
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 28.5 bits (62), Expect = 8.2 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Frame = -2 Query: 418 RAPRDLRGDRGLRAAQG-----------RVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272 + R RGDRGLR G R + GE+G+ G P G + GQ G+ R Sbjct: 2147 KGERGERGDRGLRGDPGESGADNTQRGTRGQKGEIGQMGEPGPAG----QRGQDGGVGRK 2202 Query: 271 AQARVRG 251 A RG Sbjct: 2203 GMAGRRG 2209
>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2| Length = 1464 Score = 28.5 bits (62), Expect = 8.2 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Frame = -3 Query: 402 FEGIADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDG 223 FEGI R+K GY A W+ E ++ V D+CD + + + N L Sbjct: 1115 FEGIKGVSRIKDGYNPATWMLEVSTISQEQALGV-----DFCDIYRKSELFQRNKAL--- 1166 Query: 222 YNDDYFVQILGT---SADQLWNDYKAKYSQG*SVSCCIACM 109 +Q L T + +L+ + KYS ++ C+AC+ Sbjct: 1167 ------IQELSTPPPGSSELY--FPTKYSLS-FLNQCLACL 1198
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 28.5 bits (62), Expect = 8.2 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = -2 Query: 451 ARVAVGAAGLPRAPRDLRGDRGLRAAQGRVRSGELGEGGRRQPVGRGIRRDGQVPGLLRL 272 AR GA G + R RG RG R +G G+ G QP + + + Q G + Sbjct: 532 ARGVRGARGGAQQQRG-RGVRGARGGRGGNVGGKRKADGYNQPDTKRRQTNNQNWGSQPI 590 Query: 271 AQARVRGGD 245 AQ ++GGD Sbjct: 591 AQQPLQGGD 599
>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 699 Score = 28.5 bits (62), Expect = 8.2 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Frame = -2 Query: 436 GAAGLP--RAPRDLRGDRGLRAAQGRV------RSGELGEGGRRQPVGR-GIRRDGQVPG 284 GAAG+P + P +G+ GLR G + G+ G G R PVG G+ D PG Sbjct: 280 GAAGVPGPQGPVGAKGEPGLRGPPGLIGPVGYGMPGKPGPKGDRGPVGAPGLLGDRGEPG 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,227,394 Number of Sequences: 219361 Number of extensions: 948247 Number of successful extensions: 2931 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2927 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)