Clone Name | rbaet95e07 |
---|---|
Clone Library Name | barley_pub |
>emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-12 Length = 829 Score = 894 bits (451), Expect = 0.0 Identities = 451/451 (100%) Strand = Plus / Minus Query: 2 tgctcaaccttgcgaacgttgatttattccattccaggcagtacatcaaccgtgtagtaa 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 tgctcaaccttgcgaacgttgatttattccattccaggcagtacatcaaccgtgtagtaa 770 Query: 62 tacaagtatactactagtatatcagtacatagacgtagaccggtacacatgcatgcgatg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 tacaagtatactactagtatatcagtacatagacgtagaccggtacacatgcatgcgatg 710 Query: 122 caacatgaaacggatcagccctgggagtacttggccttgtagtcgttccacagctggtcc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 caacatgaaacggatcagccctgggagtacttggccttgtagtcgttccacagctggtcc 650 Query: 182 gcgctcgtcccgaggatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 gcgctcgtcccgaggatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccg 590 Query: 242 ttcatctccgccacgaacccgggcttgcgcgagtcgcagtagtccaggaacctggccgtc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ttcatctccgccacgaacccgggcttgcgcgagtcgcagtagtccaggaacctggccgtc 530 Query: 302 acgtcgtatccctcgtcccaccggctgccgccgccctccttcacccagttcgccgctacg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 acgtcgtatccctcgtcccaccggctgccgccgccctccttcacccagttcgccgctacg 470 Query: 362 tacccggccttgagccgcacgtagtccgcgatcccctcgaagatcccgtggtgctcgtgg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tacccggccttgagccgcacgtagtccgcgatcccctcgaagatcccgtggtgctcgtgg 410 Query: 422 tagtcctgcagcccccactgccacacgtgca 452 ||||||||||||||||||||||||||||||| Sbjct: 409 tagtcctgcagcccccactgccacacgtgca 379
>gb|U32431.1|TAU32431 Triticum aestivum mRNA, clone WCI-5, complete cds Length = 862 Score = 262 bits (132), Expect = 9e-67 Identities = 168/180 (93%) Strand = Plus / Minus Query: 142 ctgggagtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctg 201 ||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| Sbjct: 699 ctgggggtacttggccttgtagtcgttccacagctggtccacgctcttccccaggatctg 640 Query: 202 cacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaaccc 261 |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 639 cacgaagtagtcgtcgctgtatccgtccttgagcttgctgttcatctccgccacgaaccc 580 Query: 262 gggcttgcgcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtccca 321 || |||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 579 ggccttgagggagtcgcagtagtccaggaacttggccgtcacgtcgtacccctcgtccca 520 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 366 cggccttgagccgcacgtagtccgcgatcccctcga 401 |||||||||||||||||||||| ||||||||||||| Sbjct: 475 cggccttgagccgcacgtagtcggcgatcccctcga 440 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 16 aacgttgatttattccattccaggcagtacatcaaccgtgtagtaatacaagta 69 |||| ||||||||||||||||||||||||||| || || ||||||||||||| Sbjct: 831 aacgctgatttattccattccaggcagtacataaattgtacagtaatacaagta 778
>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds Length = 894 Score = 143 bits (72), Expect = 6e-31 Identities = 207/252 (82%) Strand = Plus / Minus Query: 150 acttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaagt 209 ||||||| |||||||| ||||||||||| | | || || ||||||| |||||| ||||| Sbjct: 704 acttggctttgtagtccttccacagctgctgcacgttcttcccgagaatctgcgcgaaga 645 Query: 210 agtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttgc 269 |||||||| |||| || ||| | |||| |||| | | ||| ||||||||||||||| Sbjct: 644 agtcgtcggtgtacccactcttcatcttggcgttgacgtgcgcgacgaacccgggcttga 585 Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccggctgc 329 |||||||||||||||| |||||||| ||||| |||||||| |||| ||||||||| || Sbjct: 584 gcgagtcgcagtagtcaaggaacctcgccgtgacgtcgtacccctgatcccaccggtcgc 525 Query: 330 cgccgccctccttcacccagttcgccgctacgtacccggccttgagccgcacgtagtccg 389 | ||| ||||||||||| | ||| || ||||||||||||||||||||||||| | Sbjct: 524 cctgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcgg 465 Query: 390 cgatcccctcga 401 |||||||||||| Sbjct: 464 cgatcccctcga 453
>gb|AY108161.1| Zea mays PCO128916 mRNA sequence Length = 648 Score = 123 bits (62), Expect = 5e-25 Identities = 149/178 (83%) Strand = Plus / Minus Query: 148 gtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaa 207 |||||| ||||||||||| | ||||||||| | | || || | || |||||||| |||| Sbjct: 363 gtacttagccttgtagtcctgccacagctgctgcacggtcttgcccaggatctgggcgaa 304 Query: 208 gtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggctt 267 | |||||||| ||||||||||||| | |||| |||| | | ||| ||||| || ||||| Sbjct: 303 gaagtcgtcggtgtagccgtccttcatcttggcgttgagcagcgcgacgaagcccggctt 244 Query: 268 gcgcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 | ||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||| Sbjct: 243 gagcgagtcgcagtagtccaggaacctcgccgtgacgtcgtacccctggtcccaccgg 186
>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17 Length = 859 Score = 95.6 bits (48), Expect = 1e-16 Identities = 144/176 (81%) Strand = Plus / Minus Query: 150 acttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaagt 209 ||||||| |||||||| ||||||||||| | || || ||||||| |||||| ||||| Sbjct: 707 acttggctttgtagtccttccacagctgctggacgttcttcccgagaatctgcgcgaaga 648 Query: 210 agtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttgc 269 | || ||| |||| ||| ||| | |||| |||| | || ||| |||||||||||| || Sbjct: 647 aatcatcgctgtacccgctcttcatcttggcgttgagctgcgcgacgaacccgggcatga 588 Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 |||||||||||||||| |||||||| ||||| | ||||||||||| ||||||||| Sbjct: 587 gcgagtcgcagtagtcgaggaacctcgccgtgatgtcgtatccctgatcccaccgg 532 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 364 cccggccttgagccgcacgtagtccgcgatcccctcga 401 |||||||||||||||||||||||| ||||||||||||| Sbjct: 493 cccggccttgagccgcacgtagtcggcgatcccctcga 456
>ref|NM_197124.1| Oryza sativa (japonica cultivar-group) putative secretory protein (OSJNBa0051D19.12), mRNA Length = 783 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 |||||||||||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct: 646 gcgagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccgg 591 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 196 gatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccac 255 |||||| |||||| |||||||| |||| |||||||| | ||||||||| | || |||||| Sbjct: 726 gatctggacgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccac 667 Query: 256 gaaccc 261 |||||| Sbjct: 666 gaaccc 661
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Minus Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 |||||||||||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct: 90382 gcgagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccgg 90327 Score = 75.8 bits (38), Expect = 1e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Minus Query: 148 gtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaa 207 ||||||||||||||| || | ||||||||| | | || || ||||| |||||||||||| Sbjct: 92863 gtacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaa 92804 Query: 208 gtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggctt 267 ||||||| | ||||| |||||||| | |||| | || || || || |||||||| ||||| Sbjct: 92803 gtagtcgacattgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggctt 92744 Query: 268 g-cgcgagtcgcagtagtccaggaacctggccgtcacg 304 | ||| |||||||||||| | |||||| ||||||||| Sbjct: 92743 gacgc-tgtcgcagtagtcgaagaacctcgccgtcacg 92707 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 86583 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 86642 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 86643 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 86702 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 86703 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 86738 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 421 gtagtcctgcagcccccactgccacacgtgc 451 ||||||||||||||||||||||||||||||| Sbjct: 92590 gtagtcctgcagcccccactgccacacgtgc 92560 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 196 gatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccac 255 |||||| |||||| |||||||| |||| |||||||| | ||||||||| | || |||||| Sbjct: 90462 gatctggacgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccac 90403 Query: 256 gaaccc 261 |||||| Sbjct: 90402 gaaccc 90397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 86859 tcctgcagcccccactgccacacgtgca 86886
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 |||||||||||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct: 18122746 gcgagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccgg 18122801 Score = 75.8 bits (38), Expect = 1e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 148 gtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaa 207 ||||||||||||||| || | ||||||||| | | || || ||||| |||||||||||| Sbjct: 18120265 gtacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaa 18120324 Query: 208 gtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggctt 267 ||||||| | ||||| |||||||| | |||| | || || || || |||||||| ||||| Sbjct: 18120325 gtagtcgacattgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggctt 18120384 Query: 268 g-cgcgagtcgcagtagtccaggaacctggccgtcacg 304 | ||| |||||||||||| | |||||| ||||||||| Sbjct: 18120385 gacgc-tgtcgcagtagtcgaagaacctcgccgtcacg 18120421 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 18126545 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 18126486 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 18126485 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 18126426 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 18126425 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 18126390 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 421 gtagtcctgcagcccccactgccacacgtgc 451 ||||||||||||||||||||||||||||||| Sbjct: 18120538 gtagtcctgcagcccccactgccacacgtgc 18120568 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 196 gatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccac 255 |||||| |||||| |||||||| |||| |||||||| | ||||||||| | || |||||| Sbjct: 18122666 gatctggacgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccac 18122725 Query: 256 gaaccc 261 |||||| Sbjct: 18122726 gaaccc 18122731 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 18126269 tcctgcagcccccactgccacacgtgca 18126242
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 270 gcgagtcgcagtagtccaggaacctggccgtcacgtcgtatccctcgtcccaccgg 325 |||||||||||||||| |||||||| |||||||||||||| |||| |||||||||| Sbjct: 18131999 gcgagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccgg 18132054 Score = 75.8 bits (38), Expect = 1e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Plus Query: 148 gtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaa 207 ||||||||||||||| || | ||||||||| | | || || ||||| |||||||||||| Sbjct: 18129518 gtacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaa 18129577 Query: 208 gtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggctt 267 ||||||| | ||||| |||||||| | |||| | || || || || |||||||| ||||| Sbjct: 18129578 gtagtcgacattgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggctt 18129637 Query: 268 g-cgcgagtcgcagtagtccaggaacctggccgtcacg 304 | ||| |||||||||||| | |||||| ||||||||| Sbjct: 18129638 gacgc-tgtcgcagtagtcgaagaacctcgccgtcacg 18129674 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 18135798 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 18135739 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 18135738 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 18135679 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 18135678 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 18135643 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 421 gtagtcctgcagcccccactgccacacgtgc 451 ||||||||||||||||||||||||||||||| Sbjct: 18129791 gtagtcctgcagcccccactgccacacgtgc 18129821 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 196 gatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccac 255 |||||| |||||| |||||||| |||| |||||||| | ||||||||| | || |||||| Sbjct: 18131919 gatctggacgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccac 18131978 Query: 256 gaaccc 261 |||||| Sbjct: 18131979 gaaccc 18131984 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 18135522 tcctgcagcccccactgccacacgtgca 18135495
>ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative secretory protein (OSJNBa0051D19.13), mRNA Length = 702 Score = 75.8 bits (38), Expect = 1e-10 Identities = 130/158 (82%), Gaps = 2/158 (1%) Strand = Plus / Minus Query: 148 gtacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaa 207 ||||||||||||||| || | ||||||||| | | || || ||||| |||||||||||| Sbjct: 693 gtacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaa 634 Query: 208 gtagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggctt 267 ||||||| | ||||| |||||||| | |||| | || || || || |||||||| ||||| Sbjct: 633 gtagtcgacattgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggctt 574 Query: 268 g-cgcgagtcgcagtagtccaggaacctggccgtcacg 304 | ||| |||||||||||| | |||||| ||||||||| Sbjct: 573 gacgc-tgtcgcagtagtcgaagaacctcgccgtcacg 537 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 421 gtagtcctgcagcccccactgccacacgtgc 451 ||||||||||||||||||||||||||||||| Sbjct: 420 gtagtcctgcagcccccactgccacacgtgc 390
>ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative basic secretory protein (OSJNBa0051D19.25), mRNA Length = 690 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 680 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 621 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 620 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 561 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 560 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 525 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 404 tcctgcagcccccactgccacacgtgca 377
>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full insert sequence Length = 856 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 700 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 641 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 640 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 581 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 580 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 545 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 424 tcctgcagcccccactgccacacgtgca 397
>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full insert sequence Length = 852 Score = 73.8 bits (37), Expect = 4e-10 Identities = 129/157 (82%), Gaps = 2/157 (1%) Strand = Plus / Minus Query: 149 tacttggccttgtagtcgttccacagctggtccgcgctcgtcccgaggatctgcacgaag 208 |||||||||||||| || | ||||||||| | | || || ||||| ||||||||||||| Sbjct: 696 tacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaag 637 Query: 209 tagtcgtcgttgtagccgtccttgagcttgccgttcatctccgccacgaacccgggcttg 268 |||||| ||||||| || | ||| ||||| |||||| || || |||||||| |||||| Sbjct: 636 tagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctggcttg 577 Query: 269 -cgcgagtcgcagtagtccaggaacctggccgtcacg 304 ||| |||||||||||| | |||||| ||||||||| Sbjct: 576 acgc-tgtcgcagtagtcgaagaacctcgccgtcacg 541 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 425 tcctgcagcccccactgccacacgtgca 452 |||||||||||||||||||||||||||| Sbjct: 420 tcctgcagcccccactgccacacgtgca 393
>emb|CR407401.1| Gallus gallus finished cDNA, clone ChEST710n2 Length = 1096 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 gctgccgccgccctccttcacc 346 |||||||||||||||||||||| Sbjct: 169 gctgccgccgccctccttcacc 148
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtagtcgtcgttgtagccgt 227 |||||||||||||||||||| Sbjct: 476612 gtagtcgtcgttgtagccgt 476631
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tactactagtatatcagtac 89 |||||||||||||||||||| Sbjct: 48610 tactactagtatatcagtac 48591
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctgccgccgccctccttca 344 |||||||||||||||||||| Sbjct: 9609 gctgccgccgccctccttca 9628
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctgccgccgccctccttca 344 |||||||||||||||||||| Sbjct: 115428 gctgccgccgccctccttca 115447
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 accggctgccgccgccctcc 340 |||||||||||||||||||| Sbjct: 4769087 accggctgccgccgccctcc 4769106
>dbj|AK163516.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230331C12 product:exportin 4, full insert sequence Length = 1896 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccggctgccgccgccctcct 341 |||||||||||||||||||| Sbjct: 60 ccggctgccgccgccctcct 79
>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence Length = 234665 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccggctgccgccgccctcct 341 |||||||||||||||||||| Sbjct: 124818 ccggctgccgccgccctcct 124837
>dbj|AK021022.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430309A01 product:exportin 4, full insert sequence Length = 1080 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccggctgccgccgccctcct 341 |||||||||||||||||||| Sbjct: 254 ccggctgccgccgccctcct 273
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctgccgccgccctccttca 344 |||||||||||||||||||| Sbjct: 27846756 gctgccgccgccctccttca 27846775
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccggctgccgccgccctcct 341 |||||||||||||||||||| Sbjct: 28814698 ccggctgccgccgccctcct 28814717
>gb|AY627639.1| Oryzias latipes spindlin protein C (SpinC) mRNA, complete cds Length = 1706 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ccttgtagtcgttccacagctggt 179 |||||||||||| ||||||||||| Sbjct: 567 ccttgtagtcgtcccacagctggt 544
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tactactagtatatcagtac 89 |||||||||||||||||||| Sbjct: 110786 tactactagtatatcagtac 110805
>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence Length = 178801 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 tcctgcagcccccactgcca 444 |||||||||||||||||||| Sbjct: 120063 tcctgcagcccccactgcca 120082
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ccggctgccgccgccctcct 341 |||||||||||||||||||| Sbjct: 58769 ccggctgccgccgccctcct 58750 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,505,530 Number of Sequences: 3902068 Number of extensions: 2505530 Number of successful extensions: 46779 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46484 Number of HSP's gapped (non-prelim): 283 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)