Clone Information

BLAST Search Result

Clone Name	rbaet95e06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...	39	0.005
2	GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ...	36	0.035
3	GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...	36	0.045
4	GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...	36	0.045
5	LARK_DROME (Q94901) RNA-binding protein lark	34	0.13
6	GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)	34	0.13
7	GRP2_NICSY (P27484) Glycine-rich protein 2	34	0.17
8	CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (...	34	0.17
9	CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)...	34	0.17
10	CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)...	34	0.17
11	CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)...	34	0.17
12	ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5	34	0.17
13	CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)...	33	0.38
14	ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9	32	0.50
15	ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9	32	0.50
16	POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...	32	0.50
17	GIS2_YEAST (P53849) Zinc-finger protein GIS2	32	0.50
18	GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C...	32	0.65
19	GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M...	32	0.85
20	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	32	0.85
21	ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11	32	0.85
22	COAT_SOCMV (P15627) Coat protein	31	1.1
23	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	31	1.1
24	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	31	1.1
25	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	31	1.1
26	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	31	1.1
27	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	31	1.1
28	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	31	1.1
29	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	31	1.1
30	GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein...	31	1.5
31	GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein...	31	1.5
32	GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein...	31	1.5
33	COAT_FMVD (P09519) Probable coat protein	30	1.9
34	GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (...	30	2.5
35	GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ...	30	2.5
36	GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C...	30	2.5
37	GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp...	30	2.5
38	GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly...	30	2.5
39	GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ...	30	3.2
40	POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;...	30	3.2
41	GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ...	30	3.2
42	GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (...	30	3.2
43	ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6	30	3.2
44	Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493	30	3.2
45	ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6	30	3.2
46	BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog	30	3.2
47	GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ...	29	4.2
48	GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-...	29	4.2
49	GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ...	29	4.2
50	GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ...	29	4.2
51	TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li...	29	4.2
52	GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15...	29	5.5
53	GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15...	29	5.5
54	GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15...	29	5.5
55	GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro...	29	5.5
56	GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ...	29	5.5
57	GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp...	29	5.5
58	ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10	28	7.2
59	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	28	7.2
60	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	28	7.2
61	MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth...	28	7.2
62	ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7	28	7.2
63	ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ...	28	9.4
64	POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
65	GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ...	28	9.4
66	GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:...	28	9.4
67	GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
68	GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
69	GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
70	GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:...	28	9.4
71	GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains:...	28	9.4
72	GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
73	GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
74	ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ...	28	9.4
75	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
76	POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
77	POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
78	COAT_CAMVS (P03542) Coat protein	28	9.4
79	COAT_CAMVN (Q00956) Coat protein	28	9.4
80	COAT_CAMVC (P03543) Coat protein	28	9.4
81	GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
82	GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
83	ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13	28	9.4
84	POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
85	GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	9.4
86	COAT_CAMVD (P03544) Coat protein	28	9.4
87	POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
88	POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	9.4
89	COAT_CERV (P05399) Probable coat protein	28	9.4

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           CF CGE GH SRECPN+A
Sbjct: 45  CFRCGEEGHMSRECPNEA 62



 Score = 37.7 bits (86), Expect = 0.012
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           CF CGE+GH SR+CPN A
Sbjct: 72  CFRCGEAGHMSRDCPNSA 89



 Score = 35.8 bits (81), Expect = 0.045
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C+ CGESGH SRECP+
Sbjct: 198 CYKCGESGHMSRECPS 213



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C+ CG++GH SR+CPN
Sbjct: 170 CYKCGDAGHISRDCPN 185



 Score = 34.3 bits (77), Expect = 0.13
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C+ CG++GH SR+CPN
Sbjct: 142 CYKCGDAGHISRDCPN 157



 Score = 33.5 bits (75), Expect = 0.22
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C+ CGE+GH SR+CP+
Sbjct: 255 CYKCGEAGHISRDCPS 270



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH SRECP
Sbjct: 224 CYKCGKPGHISRECP 238



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C+ CG+ GH SR+CP+
Sbjct: 99  CYKCGQEGHLSRDCPS 114



 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C +CG+ GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32

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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQP-VRSECP 265
           CF CG+ GHF++ C   AH  A+P V   CP
Sbjct: 548 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578

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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           CF+CGE GH S ECPN A
Sbjct: 264 CFNCGEQGHRSNECPNPA 281

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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           CF+CGE GH S ECPN A
Sbjct: 475 CFNCGEQGHRSNECPNPA 492

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPVPLRSFSYR 238
           C+ CG SGH+S+ECP + + +A   R E P PL +  YR
Sbjct: 170 CYRCGRSGHWSKECP-RLYGSAGGGR-EPPSPLSAGGYR 206

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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGESGHF+R+C
Sbjct: 182 CYSCGESGHFARDC 195



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF CGE GH +REC
Sbjct: 138 CFKCGEPGHMAREC 151

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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF CGESGHF+R+C
Sbjct: 159 CFKCGESGHFARDC 172



 Score = 32.3 bits (72), Expect = 0.50
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGE GHF+REC
Sbjct: 196 CYKCGEDGHFAREC 209

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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132

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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132

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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132

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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           C+ CGESGH +REC  +A
Sbjct: 159 CYRCGESGHLARECTIEA 176



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGE GH  ++C
Sbjct: 120 CYSCGEFGHIQKDC 133

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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQ 286
           C  CG  GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467

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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKA 301
           C+ CGESGH +REC  +A
Sbjct: 153 CYRCGESGHLARECTIEA 170



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+ CGESGH +++C
Sbjct: 48  CYRCGESGHLAKDC 61



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C+SCGE GH  ++C
Sbjct: 114 CYSCGEFGHIQKDC 127

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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201

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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201

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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C++C + GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247

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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF+C ++GH SRECP
Sbjct: 67  CFNCNQTGHISRECP 81



 Score = 31.6 bits (70), Expect = 0.85
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C++CG++GH SR+C N
Sbjct: 118 CYTCGQAGHMSRDCQN 133



 Score = 30.0 bits (66), Expect = 2.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C++C E+GH S++CP
Sbjct: 137 CYNCNETGHISKDCP 151

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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH 298
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508

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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           C+ C + GH++R+CP K   A  P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---ATGPPPGPCPI 373

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGQEGHWSKECP 176

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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
 Frame = -2

Query: 354  CFSCGESGHFSRECP--------NKAH*AAQPVRS 274
            CF CG++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393

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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVR 277
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408

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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382

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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382

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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           CF CG++GH+SR+C        +P    CP+
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381

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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427

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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           C+ C + GH++R+CP K      P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---TTGPPPGPCPI 373

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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH 298
           CF CG  GHF++ C    H
Sbjct: 549 CFKCGRKGHFAKNCHEHIH 567

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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C++CG  GH+  +CP K
Sbjct: 509 CYTCGSPGHYQAQCPKK 525

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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CFSCG++GH  R+C
Sbjct: 526 CFSCGKTGHIKRDC 539

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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP--NKAH*AAQPVRSE 271
           C++CG+ GH  R CP  NK +   Q + S+
Sbjct: 592 CYNCGQIGHLKRSCPGLNKQNIINQAINSK 621

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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF CG+ GHF+++C
Sbjct: 545 CFKCGKKGHFAKDC 558

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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ CG+ GH++ +C NK
Sbjct: 881 CYICGQEGHYANQCRNK 897

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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSEC 268
           C++CG+ GH  R+CP       +P +++C
Sbjct: 399 CYNCGKFGHMQRQCP-------EPRKTKC 420

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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 262
           CF CG+ GH+SR+C        +P    CP+
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387

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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 354  CFSCGESGHFSRECP 310
            CF CG  GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467

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>Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493|
          Length = 231

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 234 TLQQVIHIPISISICRRSVTPCFP*EEESTMRDWFQ*YCWWRVV 103
           T+QQ + IP S+ IC+++V      EE+   RDW     W R++
Sbjct: 190 TIQQELIIP-SVEICKKTVKDLLSFEEDLGKRDW---EAWLRLI 229

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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 354  CFSCGESGHFSRECP 310
            CF CG  GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463

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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C++CGE+GH +REC
Sbjct: 19  CYNCGENGHQAREC 32



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           C++CG +GH  R+CP+
Sbjct: 60  CYACGTAGHLVRDCPS 75

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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473

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>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C +CG+ GHF+++C N+
Sbjct: 641 CRNCGQEGHFAKDCQNE 657



 Score = 28.9 bits (63), Expect = 5.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C +CGE GH S+EC
Sbjct: 572 CHNCGEEGHISKEC 585

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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C++CG+ GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414

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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C++CG+ GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418

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>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 190  TYTNTDRYMYDLLQSQAVGKGTKGNGALRSDGLR 291
            TYT+  R++++ LQ Q +G    G   +  DGLR
Sbjct: 932  TYTSVARHIHEYLQRQVLGSSADGALLVSLDGLR 965

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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 354 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 223
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450

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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 354 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 223
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450

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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 354 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 223
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450

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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           C++CG+ GH  R CP
Sbjct: 544 CYNCGQIGHLKRSCP 558

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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPN 307
           CF CG+ GH +++C N
Sbjct: 413 CFKCGKIGHMAKDCKN 428

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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           CFSCG++GH  ++C ++
Sbjct: 526 CFSCGKTGHIRKDCKDE 542

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>ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10|
          Length = 192

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQPVR-SECPVPLRSFSYRLTLQQVI 217
           C  C E GH++ EC  K     +P R +E    L+    RL LQQ I
Sbjct: 45  CQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSI 91

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG+ GH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 354 CFSCGESGHFSRECP 310
           CF CG+ GH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175

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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           C  CG++GHFSR+C
Sbjct: 299 CKICGQTGHFSRDC 312

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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C + GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365

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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNKAH*AAQ 286
           C++CG SGH++++C   +  A Q
Sbjct: 854 CYNCGVSGHYAQDCKQSSMEANQ 876

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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 397 CFNCGKEGHLARNC 410

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>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein|
           p25; Core protein p16]
          Length = 508

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 402 CFNCGKEGHLARNC 415

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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C  C E GH++R+CP K
Sbjct: 504 CAYCKEKGHWARDCPKK 520

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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHLARNC 404

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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519

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>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519

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>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ CG+SGH    CP++
Sbjct: 410 CWKCGKSGHIMANCPDR 426

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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 354  CFSCGESGHFSRECPNKAH*AAQ 286
            C++CG SGH++++C   +  A Q
Sbjct: 1123 CYNCGVSGHYAQDCKQSSMEANQ 1145

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>COAT_CAMVS (P03542) Coat protein|
          Length = 489

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C   GH++ ECPN+
Sbjct: 414 CWICNIEGHYANECPNR 430

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>COAT_CAMVN (Q00956) Coat protein|
          Length = 488

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C   GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428

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>COAT_CAMVC (P03543) Coat protein|
          Length = 488

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C   GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428

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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 351 FSCGESGHFSRECP 310
           F+CG SGH++R CP
Sbjct: 7   FACGHSGHWARGCP 20

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>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 531

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHLARNC 404

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>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 397 CFNCGKEGHLARNC 410

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>COAT_CAMVD (P03544) Coat protein|
          Length = 490

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C   GH++ ECPN+
Sbjct: 413 CWICNIEGHYANECPNR 429

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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ CG+SGH    CP++
Sbjct: 410 CWKCGKSGHIMANCPDR 426

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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 354 CFSCGESGHFSREC 313
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404

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>COAT_CERV (P05399) Probable coat protein|
          Length = 494

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 354 CFSCGESGHFSRECPNK 304
           C+ C   GH++ ECPN+
Sbjct: 420 CWVCNIEGHYANECPNR 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,224,963
Number of Sequences: 219361
Number of extensions: 797331
Number of successful extensions: 2015
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result