ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2, complete cds Length = 990 Score = 462 bits (233), Expect = e-127 Identities = 300/320 (93%), Gaps = 3/320 (0%) Strand = Plus / Minus Query: 35 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaaagataac 94 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 933 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaa-gataac 875 Query: 95 ttcgaacaaacaacacgccaccagcaatactactggaaccaatctcgcatcgtcgattct 154 ||||||| ||||| | |||||| ||||||| |||||||||| ||||||||||||||||| Sbjct: 874 ttcgaacgaacaataatccaccaacaatacttctggaaccaagctcgcatcgtcgattct 815 Query: 155 tcttcctaggggaagcacggggtaacactacggcgacatatactaatactgataggtata 214 |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 814 tcttcctacgagaagcacggg--aacactacggcgacatatactaatactgataggtata 757 Query: 215 tgtatgacttgctgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactca 274 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 756 ggtatgacttgctgcagagtcaggcggtaggaaaaggagcgaaggggaacggggaactca 697 Query: 275 gatctgacgggctgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccg 334 |||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||| Sbjct: 696 gatctgacgggcagcgccgcctagttggtcttgttggggcactcgcgcgagaagtggccg 637 Query: 335 gactcgccgcaggagaagca 354 |||||||||||||||||||| Sbjct: 636 gactcgccgcaggagaagca 617
>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein, complete cds Length = 996 Score = 462 bits (233), Expect = e-127 Identities = 300/320 (93%), Gaps = 3/320 (0%) Strand = Plus / Minus Query: 35 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaaagataac 94 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 933 tccatccaatacatagagatagatcagtctgtccacatcagacgacacgacaa-gataac 875 Query: 95 ttcgaacaaacaacacgccaccagcaatactactggaaccaatctcgcatcgtcgattct 154 ||||||| ||||| | |||||| ||||||| |||||||||| ||||||||||||||||| Sbjct: 874 ttcgaacgaacaataatccaccaacaatacttctggaaccaagctcgcatcgtcgattct 815 Query: 155 tcttcctaggggaagcacggggtaacactacggcgacatatactaatactgataggtata 214 |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 814 tcttcctacgagaagcacggg--aacactacggcgacatatactaatactgataggtata 757 Query: 215 tgtatgacttgctgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactca 274 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 756 ggtatgacttgctgcagagtcaggcggtaggaaaaggagcgaaggggaacggggaactca 697 Query: 275 gatctgacgggctgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccg 334 |||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||| Sbjct: 696 gatctgacgggcagcgccgcctagttggtcttgttggggcactcgcgcgagaagtggccg 637 Query: 335 gactcgccgcaggagaagca 354 |||||||||||||||||||| Sbjct: 636 gactcgccgcaggagaagca 617
>emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; clone MWG2034.rev Length = 312 Score = 430 bits (217), Expect = e-117 Identities = 223/225 (99%) Strand = Plus / Minus Query: 1 gacagcataactcgacttgcataacttagttcattccatccaatacatagagatagatca 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 225 gacagcataactcgacttgcataacttagttcatcccatccaatacatagagatagatca 166 Query: 61 gtctgtccacatcagacgacacgacaaagataacttcgaacaaacaacacgccaccagca 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 165 gtctgtccacatcagacgacacgacaaagataacttcaaacaaacaacacgccaccagca 106 Query: 121 atactactggaaccaatctcgcatcgtcgattcttcttcctaggggaagcacggggtaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105 atactactggaaccaatctcgcatcgtcgattcttcttcctaggggaagcacggggtaac 46 Query: 181 actacggcgacatatactaatactgataggtatatgtatgacttg 225 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 45 actacggcgacatatactaatactgataggtatatgtatgacttg 1
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 214 bits (108), Expect = 2e-52 Identities = 169/188 (89%), Gaps = 1/188 (0%) Strand = Plus / Minus Query: 168 agcacggggtaacactacggcgacatatactaatactgataggtatatg-tatgacttgc 226 |||| |||| ||| |||||||||| |||||| |||||||||||||| | |||||||||| Sbjct: 879 agcagggggaaacgctacggcgactaatactagtactgataggtatagggtatgacttgc 820 Query: 227 tgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactcagatctgacgggc 286 |||||| ||||| |||||| |||||| ||| || |||||||||||||||||||| | || Sbjct: 819 tgcagaatcaggaggtaggtaaaggagcgagggtaaacggggcactcagatctgaagagc 760 Query: 287 tgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccggactcgccgcag 346 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 tgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccggactcgccgcag 700 Query: 347 gagaagca 354 |||||||| Sbjct: 699 gagaagca 692 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 106 aacacgccaccagcaatactactggaaccaatctcgcatcg 146 ||||| ||||||||||| || |||||||||| |||| |||| Sbjct: 923 aacacaccaccagcaattcttctggaaccaagctcggatcg 883
>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3, complete cds Length = 1025 Score = 206 bits (104), Expect = 4e-50 Identities = 168/188 (89%), Gaps = 1/188 (0%) Strand = Plus / Minus Query: 168 agcacggggtaacactacggcgacatatactaatactgataggtatatg-tatgacttgc 226 |||| |||| ||| |||||||||| |||||| |||||||||||||| | |||||||||| Sbjct: 867 agcagggggaaacgctacggcgactaatactagtactgataggtatagggtatgacttgc 808 Query: 227 tgcagagtcaggcggtaggaaaaggaacgaaggggaacggggcactcagatctgacgggc 286 |||||| ||||| |||||| |||||| | | || |||||||||||||||||||| | || Sbjct: 807 tgcagaatcaggaggtaggtaaaggagcaagggtaaacggggcactcagatctgaagagc 748 Query: 287 tgcgccgcctagtgagccttgttggggcactcgcgggagaagtggccggactcgccgcag 346 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 tgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccggactcgccgcag 688 Query: 347 gagaagca 354 |||||||| Sbjct: 687 gagaagca 680 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 106 aacacgccaccagcaatactactggaaccaatctcgcatcg 146 ||||| ||||||||||| || |||||||||| ||||||||| Sbjct: 911 aacacaccaccagcaattcttctggaaccaagctcgcatcg 871
>ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 308 ttggggcactcgcgggagaagtggccggactcgccgcag 346 |||||||| || |||||||||||||| |||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
>ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial mRNA Length = 552 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 308 ttggggcactcgcgggagaagtggccggactcgccgcag 346 |||||||| || |||||||||||||| |||||||||||| Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435
>ref|XM_479920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Minus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
>ref|XM_507115.1| PREDICTED Oryza sativa (japonica cultivar-group), P0582D05.112 mRNA Length = 984 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Minus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
>ref|XM_390462.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10286.1) partial mRNA Length = 558 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Minus Query: 308 ttggggcactcgcgggagaagtggccggactcgccgcag 346 |||||||| || |||||| ||||||| |||||||||||| Sbjct: 479 ttggggcagtcacgggagtagtggccagactcgccgcag 441
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Plus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 1638987 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 1639029
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Plus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 38487 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 38529
>dbj|AK101577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050L02, full insert sequence Length = 984 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Minus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
>dbj|AK070034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A08, full insert sequence Length = 963 Score = 46.1 bits (23), Expect = 0.094 Identities = 38/43 (88%) Strand = Plus / Minus Query: 304 cttgttggggcactcgcgggagaagtggccggactcgccgcag 346 |||| ||||||||||||| | || |||||||| |||||||||| Sbjct: 674 cttgctggggcactcgcgagcgatgtggccggtctcgccgcag 632
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tatgtatgacttgctgcagagt 234 |||||||||||||||||||||| Sbjct: 78440 tatgtatgacttgctgcagagt 78419
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tatgtatgacttgctgcagagt 234 |||||||||||||||||||||| Sbjct: 17788789 tatgtatgacttgctgcagagt 17788768
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 tatgtatgacttgctgcagagt 234 |||||||||||||||||||||| Sbjct: 17883105 tatgtatgacttgctgcagagt 17883084
>ref|XM_530107.1| PREDICTED: Pan troglodytes LOC456635 (LOC456635), mRNA Length = 923 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 553 gtggccgggctcgccgcaggagaag 577
>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence Length = 1039 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ttgttggggcactcgcgggagaagtggcc 333 ||||||||||| |||||||||| |||||| Sbjct: 678 ttgttggggcagtcgcgggagatgtggcc 650
>ref|NM_020317.3| Homo sapiens chromosome 1 open reading frame 63 (C1orf63), transcript variant 2, mRNA Length = 1482 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 276 gtggccgggctcgccgcaggagaag 300
>ref|NG_003255.2| Homo sapiens Rhesus blood group cluster (RHD/RHCE@) on chromosome 1 Length = 208746 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 24771 gtggccgggctcgccgcaggagaag 24747
>gb|BC041843.1| Homo sapiens chromosome 1 open reading frame 63, mRNA (cDNA clone MGC:43558 IMAGE:5269181), complete cds Length = 3079 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 1216 gtggccgggctcgccgcaggagaag 1240
>emb|AL049299.1|HSM800084 Homo sapiens genomic DNA; cDNA DKFZp564P233 (from clone DKFZp564P233) Length = 2539 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 2427 gtggccgggctcgccgcaggagaag 2403
>emb|CR859914.1| Pongo pygmaeus mRNA; cDNA DKFZp469M2120 (from clone DKFZp469M2120) Length = 2956 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 239 gtggccgggctcgccgcaggagaag 263
>emb|CR598998.1| full-length cDNA clone CS0DI073YL02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1399 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 229 gtggccgggctcgccgcaggagaag 253
>dbj|AK027318.1| Homo sapiens cDNA FLJ14412 fis, clone HEMBA1004669, weakly similar to SON PROTEIN Length = 1962 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 236 gtggccgggctcgccgcaggagaag 260
>dbj|AB169364.1| Macaca fascicularis testis cDNA, clone: QtsA-19294, similar to human NPD014 protein (NPD014), transcript variant 2, mRNA, RefSeq: NM_020317.3 Length = 1456 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 236 gtggccgggctcgccgcaggagaag 260
>gb|BC065040.1| Homo sapiens chromosome 1 open reading frame 63, transcript variant 2, mRNA (cDNA clone MGC:74698 IMAGE:6147639), complete cds Length = 1417 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 214 gtggccgggctcgccgcaggagaag 238
>gb|BC001892.1| Homo sapiens chromosome 1 open reading frame 63, transcript variant 2, mRNA (cDNA clone MGC:1827 IMAGE:3534629), complete cds Length = 1431 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 225 gtggccgggctcgccgcaggagaag 249
>gb|AF267856.1|AF267856 Homo sapiens HT033 mRNA, complete cds Length = 2972 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 227 gtggccgggctcgccgcaggagaag 251
>gb|AF247168.1|AF247168 Homo sapiens NPD014 (NPD014) mRNA, complete cds Length = 1972 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 228 gtggccgggctcgccgcaggagaag 252
>emb|BX649435.8| Human DNA sequence from clone RP13-398I3 on chromosome 1, complete sequence Length = 14104 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 11630 gtggccgggctcgccgcaggagaag 11606
>tpe|BN000065.1|HSA000065 TPA: TPA_inf: Homo sapiens SMP1 gene, RHD gene and RHCE gene Length = 315242 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 108214 gtggccgggctcgccgcaggagaag 108190
>gb|AY104445.1| Zea mays PCO063886 mRNA sequence Length = 540 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 ttgttggggcactcgcgggagaagtggcc 333 ||||||||||| |||||||||| |||||| Sbjct: 191 ttgttggggcagtcgcgggagatgtggcc 163
>dbj|AP001258.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D1, complete sequence Length = 128654 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 aaacaacacgccaccagcaat 122 ||||||||||||||||||||| Sbjct: 99914 aaacaacacgccaccagcaat 99894
>emb|AL031432.1|HS465N24 Human DNA sequence from clone RP3-465N24 on chromosome 1p35.1-36.13 Contains the gene for NPD014 protein (NPD014), the gene for GCIP-interacting protein p29 (P29), a novel gene and four CpG islands, complete sequence Length = 129747 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 108214 gtggccgggctcgccgcaggagaag 108190
>emb|AL953882.5| Human DNA sequence from clone RP4-706G24 on chromosome 1, complete sequence Length = 132066 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtggccggactcgccgcaggagaag 352 |||||||| |||||||||||||||| Sbjct: 103789 gtggccgggctcgccgcaggagaag 103765
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tcgcatcgtcgattcttctt 158 |||||||||||||||||||| Sbjct: 116455 tcgcatcgtcgattcttctt 116436
>emb|CT009481.4| Human DNA sequence from clone DAAP-143K21 on chromosome 6, complete sequence Length = 13073 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 5765 ggtaggaagaggaacgaaggggaa 5742
>emb|CR674622.2|CNS0FJIC Tetraodon nigroviridis full-length cDNA Length = 599 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ctcgacttgcataacttagt 30 |||||||||||||||||||| Sbjct: 65 ctcgacttgcataacttagt 46
>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic sequence Length = 346809 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 314026 ggtaggaagaggaacgaaggggaa 314049
>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103 genomic sequence Length = 341361 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 317114 ggtaggaagaggaacgaaggggaa 317137
>gb|DQ249178.1| Homo sapiens isolate 388CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic sequence Length = 89624 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 55421 ggtaggaagaggaacgaaggggaa 55444
>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401 genomic sequence Length = 351341 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 329051 ggtaggaagaggaacgaaggggaa 329074
>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 338544 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 325121 ggtaggaagaggaacgaaggggaa 325144
>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 342745 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 305727 ggtaggaagaggaacgaaggggaa 305750
>emb|BX247900.8| Human DNA sequence from clone DASS-357P10 on chromosome 6, complete sequence Length = 75621 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 29029 ggtaggaagaggaacgaaggggaa 29006
>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the gene for STG protein, the CDSN gene for corneodesmosin, the gene for SEEK1 protein, the gene for SPR1 protein, the gene for HCR, the TCF19 gene for transcription factor 19, the POU5F1 gene for POU domain, class 5, transcription factor 1, a putative novel transcript and four CpG islands, complete sequence Length = 204298 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 1397 ggtaggaagaggaacgaaggggaa 1374
>emb|AL663093.10| Human DNA sequence from clone XXbac-31G15 on chromosome 6 contains a novel protein, a putative novel transcript and four CpG islands, complete sequence Length = 117327 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 106637 ggtaggaagaggaacgaaggggaa 106614
>emb|AL669830.9| Human DNA sequence from clone XXbac-118E17 on chromosome 6 contains the GTF2H4 gene for general transcription factor IIH, polypeptide 4, 52kDa, the gene for KIAA1885 protein, the gene for a novel protein, three putative novel transcripts, the gene for DPCR1 protein and six CpG islands, complete sequence Length = 156272 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 155669 ggtaggaagaggaacgaaggggaa 155646
>emb|AL669876.7| Human DNA sequence from clone RP11-190L2 on chromosome X, complete sequence Length = 90143 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ttgcataacttagttcattc 36 |||||||||||||||||||| Sbjct: 20850 ttgcataacttagttcattc 20831
>emb|AL023694.1|HS511E16 Human DNA sequence from clone RP3-511E16 on chromosome 6p24.3-25.1 Contains the 3' end of the EEF1E1 gene for eukaryotic translation elongation factor 1 epsilon 1, the 5' end of gene FLJ21789 for the ortholog of mouse muted and a CpG island, complete sequence Length = 56632 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 aggaaaaggaacgaaggggaacgg 266 ||||||||||| |||||||||||| Sbjct: 4616 aggaaaaggaaagaaggggaacgg 4593
>emb|CR759772.4| Human DNA sequence from clone DAMC-192G6 on chromosome 6, complete sequence Length = 111150 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 105963 ggtaggaagaggaacgaaggggaa 105940
>emb|CR847993.4| Human DNA sequence from clone DADB-349N3 on chromosome 6, complete sequence Length = 20924 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 2109 ggtaggaagaggaacgaaggggaa 2086
>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete sequence Length = 135396 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 53426 ggtaggaagaggaacgaaggggaa 53403
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 tcgcatcgtcgattcttctt 158 |||||||||||||||||||| Sbjct: 2023578 tcgcatcgtcgattcttctt 2023559
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 880191 ggtaggaagaggaacgaaggggaa 880214
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 451340 ggtaggaagaggaacgaaggggaa 451363
>dbj|AB023048.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:53L9, complete sequence Length = 192650 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 ggtaggaaaaggaacgaaggggaa 263 |||||||| ||||||||||||||| Sbjct: 47865 ggtaggaagaggaacgaaggggaa 47888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,504,239 Number of Sequences: 3902068 Number of extensions: 2504239 Number of successful extensions: 34062 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33929 Number of HSP's gapped (non-prelim): 127 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
