>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
 Frame = -2

Query: 237 RRPSRSCGTPAPGRPAP---------------CGRFGRAARSTETAGASRPIRPRRMGSL 103
           RRP R   TP PGR AP                GR   + RS    G  RP  PRR  S 
Sbjct: 278 RRPPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRSRPATGGHRP--PRRTFSS 335

Query: 102 LRRQFVW 82
            +R  +W
Sbjct: 336 GQRALLW 342

>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
 Frame = -2

Query: 237 RRPSRSCGTPAPGRPAP---------------CGRFGRAARSTETAGASRPIRPRRMGSL 103
           RRP R   TP PGR AP                GR   + RS    G  RP  PRR  S 
Sbjct: 278 RRPPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRSRPATGGHRP--PRRTFSS 335

Query: 102 LRRQFVW 82
            +R  +W
Sbjct: 336 GQRALLW 342

>Y36K_HALSN (P14321) Hypothetical 36 kDa protein|
          Length = 328

 Score = 30.8 bits (68), Expect = 0.98
 Identities = 20/65 (30%), Positives = 35/65 (53%)
 Frame = +2

Query: 14  FVRCPRICFDTFS*QIDSHRRNTQTNCRLSNEPILRGRIGRDAPAVSVLRAARPNRPHGA 193
           FV+ P +  + F   +D+H +N++   R ++  ++      D  AVS+ R+ARP+R  G 
Sbjct: 170 FVKGPVVA-EQFQDVLDAHVKNSEGAGREAHRAVVED--DEDEAAVSIRRSARPDREDGI 226

Query: 194 GRPGA 208
              GA
Sbjct: 227 ENLGA 231

>HRCA_CHLPN (Q9Z850) Heat-inducible transcription repressor hrcA|
          Length = 398

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 65  SHRRNTQTNCRLSNEPILR 121
           S RR   +NC+LSNEPILR
Sbjct: 365 SFRRPLTSNCKLSNEPILR 383

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 98  LSNEPILRGRIGRDAPAVSVLRAARPNRPHGAGRPG-AGVPHERDG 232
           L+  P LRG  G   P      A  P  P  AG PG  G+P ER G
Sbjct: 688 LAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGG 733

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 222 SCGTPAPGRPAPCGRFGRAARSTETAGASRPIRPR 118
           SC  P PG  +P  R  RA+ +T   G SRP   R
Sbjct: 30  SCRPPPPGSASPSPRPRRASCATGCCGRSRPYARR 64

>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 237 RRPSRSCGTPAPGRPAPCGRFGRAARSTETAGASRPIRPRRMGSLLR 97
           RR +       PGRP P  R   A R  + AG   P+RP R+  + R
Sbjct: 75  RRKAGGARRSPPGRPRPEPR--NAPRVAQLAGLPAPLRPERLAPVGR 119

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 231 PSRSCGTPAPGRPAPCGRFGRAARSTETAGASRPIRPRRMG 109
           PS + G P P  P P G+ G      ET  A RP  P   G
Sbjct: 877 PSGNIGLPGP--PGPAGKZGSKGPRGETGPAGRPGEPGPAG 915

>GLSK_HUMAN (O94925) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase)
          Length = 669

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +2

Query: 95  RLSNEPILRGRIGRDAPAVSV-LRAARP-----NRPHGAGRPGAG 211
           RL    +LR  + R    VS  LR A+P      RP G GRP AG
Sbjct: 3   RLRGSGMLRDLLLRSPAGVSATLRRAQPLVTLCRRPRGGGRPAAG 47

>VTS1_USTMA (Q4P965) Protein VTS1|
          Length = 728

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 110 PILRGRIGRDAP----AVSVLRAARPNRPHGAGRPGAGVPHERDG 232
           P L G+ GR +P    + SV  AA P    GAG  GAG  +   G
Sbjct: 559 PGLAGQAGRKSPRSGTSPSVRAAALPGAAGGAGSGGAGASNAAGG 603


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,268,718
Number of Sequences: 219361
Number of extensions: 759193
Number of successful extensions: 3030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3026
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)