ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUS81_HUMAN (Q96NY9) Crossover junction endonuclease MUS81 (EC 3... 29 5.2
2LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 8.9
3LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3... 28 8.9

>MUS81_HUMAN (Q96NY9) Crossover junction endonuclease MUS81 (EC 3.1.22.-)|
          Length = 551

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 329 RKELDEFVAGAFDGPFREAVSMLSK----RRTYLLEMNG 225
           RK LD+  +   DG FRE    L +    RR YL+E +G
Sbjct: 334 RKRLDDLCSSIIDGRFREQKFRLKRCGLERRVYLVEEHG 372



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>LOXL4_HUMAN (Q96JB6) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4) (Lysyl oxidase-related protein
           C)
          Length = 756

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 93  WHPCNRHHHFVAV-TSYDRL 37
           WH C+RH+H + V T YD L
Sbjct: 607 WHQCHRHYHSIEVFTHYDLL 626



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>LOXL4_BOVIN (Q8MJ24) Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 4)
          Length = 757

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 93  WHPCNRHHHFVAV-TSYDRL 37
           WH C+RH+H + V T YD L
Sbjct: 608 WHQCHRHYHSIEVFTHYDLL 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,088,763
Number of Sequences: 219361
Number of extensions: 875351
Number of successful extensions: 2132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2131
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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