>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin|
            (Endostatin-XV)]
          Length = 1367

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 205  PPAEP-FPGLAGR*AKKITLPEAPAGVSGLP 294
            PP  P +PGL G+  + +  P+ P G+ GLP
Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063

>US10_EHV4 (P18349) 28 kDa protein (ORF3)|
          Length = 259

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 315 VAVDGDVRKSGDAGGGLG 262
           +AVDGDVR  GD GGG G
Sbjct: 40  MAVDGDVRTGGDCGGGEG 57

>FHR3_HUMAN (Q02985) Complement factor H-related protein 3 precursor (FHR-3) (H|
           factor-like protein 3) (DOWN16)
          Length = 330

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 121 RKRVASSTQP*FQTRGTN-VRCSSGHWTLPP 210
           + RV    QP ++ +G+N V CS+G W+ PP
Sbjct: 232 QSRVEYQCQPYYELQGSNYVTCSNGEWSEPP 262

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 205 PPAEP-FPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGG 357
           PP  P FPG  G        P  PAG+ G+P +   R  P   I+  F F G
Sbjct: 408 PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAG 451

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 223  PGLAGR*AKKITLPEAPAGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 390
            PGL G+  K IT P+  AG+ GLP       +P  +     P + G A  +  PGLP
Sbjct: 1261 PGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLP 1317

>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase|
           domain 11) (Metalloproteinase-like, disintegrin-like,
           and cysteine-rich protein) (MDC)
          Length = 773

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 356 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFFA*RPANPGNGSAGGRVQWPE 186
           PP G      R  + WR +A +GSPE+P G+          P+     S+GG V+ P+
Sbjct: 19  PPPGLGALGPRGALHWRSSAHVGSPESPEGSE------VTEPSRLVRQSSGGEVRKPQ 70

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 200  PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 316
            P  R +R Q W AV+    L   P PASP  L  P+ A+
Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870

>DPO3B_MYCPA (Q9L7L6) DNA polymerase III beta subunit (EC 2.7.7.7)|
          Length = 399

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = -1

Query: 381 RQIARSRASPERESG*DFPSRDVA------VDG-DVRKSGDAGGGLGKSYL 250
           R++  S ASP+ E+    P++ +A      +DG DVR S  AG G+GK  L
Sbjct: 189 RELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRLSLGAGAGVGKDGL 239

>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I|
          Length = 602

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 211 AEPFPGLAGR*AKKITLPEAPAGVSGLPNVAVNRHIPAREILTRF 345
           A P PG   R A  + +P AP G + +   +V+  + AR  + R+
Sbjct: 173 ALPMPGAPERPAVALPMPGAPEGPAAIQQPSVDVKLTARRTIIRY 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,124,362
Number of Sequences: 219361
Number of extensions: 1269020
Number of successful extensions: 3366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3362
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)