ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95d08 |
|---|---|
| Clone Library Name | barley_pub |
>UNG_EHV1V (P69859) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 312 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 33 PSLGNLWFATRKSQPKGRHPSRGWM 107 PSL N++ A +KS P RHP G++ Sbjct: 178 PSLRNIYSAVQKSYPSFRHPMHGFL 202
>UNG_EHV1B (P28866) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 312 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 33 PSLGNLWFATRKSQPKGRHPSRGWM 107 PSL N++ A +KS P RHP G++ Sbjct: 178 PSLRNIYSAVQKSYPSFRHPMHGFL 202
>ATM_PIG (Q6PQD5) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (A-T, mutated homolog) Length = 3056 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +1 Query: 67 SHNPKDDTPAGDGCPHPPVHFPLHTVTLTGTHIQTQHIRFPTILILLYGVLRREPPSY 240 S +P D + D P+PP HFP H + T +I H T L + VL + P SY Sbjct: 1362 STDPCDFSGDLDPRPNPP-HFPSHVIKATFAYISNCH---KTKLKSILEVLSKSPDSY 1415
>NU5M_PETMA (Q35543) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 598 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 27 LFPSLGNLWFATRKSQPKGRHPSRGWMPAS---PCPFSA 134 L P+LG L AT KS G HP W+PA+ P P SA Sbjct: 210 LIPTLGFLIAATGKSAQFGLHP---WLPAAMEGPTPVSA 245
>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated) (A-T, mutated) Length = 3056 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 100 DGCPHPPVHFPLHTVTLTGTHIQTQHIRFPTILILLYGVLRREPPSY 240 D P+PP HFP H + T +I H T L + +L + P SY Sbjct: 1373 DPAPNPP-HFPSHVIKATFAYISNCH---KTKLKSILEILSKSPDSY 1415
>HCYG_HELPO (P56823) Hemocyanin, beta-C chain unit G (Fragment)| Length = 404 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +1 Query: 109 PHPPVHFPLHTVTLTGTHIQTQHIRFPTI 195 P HF +H V++ GT + + IR PT+ Sbjct: 364 PDSEYHFNIHIVSVNGTELDSHLIRSPTV 392
>POTE1_CHICK (P62597) Protection of telomeres 1 (cPot1) (POT1-like telomere| end-binding protein) Length = 778 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +1 Query: 97 GDGCPHPPVHFPLHTVTLTGTHIQTQHIRFPTILILLY 210 G CP+P P+ L G + H+R T+ +L+Y Sbjct: 330 GTKCPYPTWKVPVEAKELEGDRVLLHHLRNLTVDVLVY 367
>NU5M_XENLA (P03922) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 604 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = +3 Query: 15 SPSILFPSLGNLWFATRKSQPKGRHPSRGWMPAS---PCPFSA 134 S ++ P LG + AT KS G HP W+PA+ P P SA Sbjct: 208 SDNLTLPLLGLILAATGKSAQFGLHP---WLPAAMEGPTPVSA 247
>PPCK_MYCLE (O06084) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 609 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = +3 Query: 9 EISPSILFPSLGNLWFATRKSQPKGRHPSRGWMPASPCPFSA 134 E P+ L GN W+A + P SR P S CP A Sbjct: 360 EGEPAHLIDWKGNDWYAGKTETPAAHSNSRYCTPMSQCPILA 401
>NU5M_DASNO (O21335) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 601 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +3 Query: 12 ISPSILFPSLGNLWFATRKSQPKGRHPSRGWMPAS---PCPFSA 134 + P+ L P LG L A KS G HP W+P++ P P SA Sbjct: 204 LKPTNLLPLLGLLVAAAGKSAQFGLHP---WLPSAMEGPTPVSA 244
>NU5M_SORFM (Q953I4) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 606 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +3 Query: 27 LFPSLGNLWFATRKSQPKGRHPSRGWMPAS---PCPFSA 134 L P LG L AT KS G HP W+P++ P P SA Sbjct: 210 LLPLLGLLLAATGKSAQFGLHP---WLPSAMEGPTPVSA 245
>MUC1_HYLLA (Q29435) Mucin-1 precursor (MUC-1)| Length = 475 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 108 ASIPGWGVVLWVVTCV 61 A +PGWG+ L V+ CV Sbjct: 374 AGVPGWGIALLVLVCV 389
>NU5M_STRCA (Q35813) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 605 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = +3 Query: 15 SPSILFPSLGNLWFATRKSQPKGRHPSRGWMPAS---PCPFSA 134 S + + P LG + AT KS G HP W+PA+ P P SA Sbjct: 207 SQTPILPLLGLILAATGKSAQFGLHP---WLPAAMEGPTPVSA 246
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 108 ASIPGWGVVLWVVTCV 61 A +PGWG+ L V+ CV Sbjct: 1154 AGVPGWGIALLVLVCV 1169
>PPCK_MYCPA (Q73TS2) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 609 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/42 (35%), Positives = 17/42 (40%) Frame = +3 Query: 9 EISPSILFPSLGNLWFATRKSQPKGRHPSRGWMPASPCPFSA 134 E P L GN W+A + P SR P S CP A Sbjct: 360 EGQPEHLIDWKGNDWYAGKTETPAAHPNSRYCTPMSQCPILA 401
>MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT)| (Episialin) Length = 630 Score = 27.3 bits (59), Expect = 9.3 Identities = 8/17 (47%), Positives = 12/17 (70%) Frame = -2 Query: 111 RASIPGWGVVLWVVTCV 61 R +PGWG+ L V+ C+ Sbjct: 528 RPGVPGWGIALLVLVCI 544
>ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (PAK-interacting| exchange factor beta) (Beta-Pix) (COOL-1) (p85) Length = 803 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/35 (42%), Positives = 15/35 (42%) Frame = +1 Query: 37 HLVTFGLLHASHNPKDDTPAGDGCPHPPVHFPLHT 141 H VT HA P TPA PHP H HT Sbjct: 600 HPVTPSSKHADSKPAPLTPAYHTLPHPSHHGTPHT 634 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,268,780 Number of Sequences: 219361 Number of extensions: 1043572 Number of successful extensions: 2488 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2488 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
