ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3... 63 3e-10
2BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3... 59 5e-09
3BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)... 52 1e-06
4BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Ge... 52 1e-06
5XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpA... 44 3e-04
6BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)... 43 5e-04
7BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21... 38 0.015
8BGL1_ASPAC (P48825) Beta-glucosidase 1 precursor (EC 3.2.1.21) (... 36 0.045
9BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Ge... 34 0.17
10Y2036_BORPE (Q7VWZ5) UPF0225 protein BP2036 32 1.1
11SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro... 30 2.5
12ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 30 2.5
13GCSP_YEAST (P49095) Glycine dehydrogenase [decarboxylating], mit... 30 4.2
14CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (... 30 4.2
15MEP1B_RAT (P28826) Meprin A beta-subunit precursor (EC 3.4.24.18... 25 5.4
16COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protei... 29 5.5
17Y3385_BORBR (Q7WH25) UPF0225 protein BB3385 29 5.5
18Y1723_BORPA (Q7W9N2) UPF0225 protein BPP1723 29 5.5
19ACPD_VIBPA (Q87PP9) Putative acyl carrier protein phosphodiester... 29 5.5
20VCAP_EBV (P03226) Major capsid protein (MCP) 29 7.2
21HOLB_PSEAE (P52024) DNA polymerase III delta' subunit (EC 2.7.7.7) 29 7.2
22GLP1_CAEEL (P13508) Protein glp-1 precursor 29 7.2
23HOX3_BRAFL (P50901) Homeobox protein HOX3 28 9.4
24Y484_TREPA (O83497) Hypothetical protein TP0484 28 9.4
25VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai... 28 9.4
26MFS14_MAIZE (Q01900) MFS14 protein precursor 28 9.4

>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase) (T-cell inhibitor)
          Length = 765

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 23/124 (18%)
 Frame = -1

Query: 467 NLTIPAPGPSVIQNVCKSVR-CVVVLISGRPLVVEPYISAMDAFVAAWLPGSEG-QGVAD 294
           N+TIP     +I  +  + +  V+VL++GRPL +       DA +  W  G+EG   +AD
Sbjct: 524 NITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIAD 583

Query: 293 VLFGDYGFSGKLARTWFKSADQLP-----MNVG----------------DKHYDPLFPFG 177
           VLFGDY  SGKL  ++ +S  Q+P     +N G                D+   PL+PFG
Sbjct: 584 VLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSRYFDEANGPLYPFG 643

Query: 176 FGLT 165
           +GL+
Sbjct: 644 YGLS 647



to top

>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase)
          Length = 765

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 22/102 (21%)
 Frame = -1

Query: 404 VVVLISGRPLVVEPYISAMDAFVAAWLPGSEG-QGVADVLFGDYGFSGKLARTWFKSADQ 228
           V+VL++GRPL +       DA +  W  G+EG   +ADVLFGDY  SGKL  ++ +S  Q
Sbjct: 546 VLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQ 605

Query: 227 LP-----MNVG----------------DKHYDPLFPFGFGLT 165
           +P     +N G                D+    L+PFG+GL+
Sbjct: 606 IPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLS 647



to top

>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)|
           (Beta-D-glucoside glucohydrolase)
          Length = 818

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 28/128 (21%)
 Frame = -1

Query: 467 NLTIPAPGPSVIQNVCKS-VRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSE-GQGVAD 294
           ++ +P     +I+ V ++    VVVL +G P+ + P++  + A +  W PG E G  +AD
Sbjct: 565 DMRLPGRQEELIEAVAETNPNVVVVLQTGGPIEM-PWLGKVRAVLQMWYPGQELGNALAD 623

Query: 293 VLFGDYGFSGKLARTWFKS-ADQLPMN--------------------VGDKHYD-----P 192
           VLFGD   +G+L +T+ K+  D   +                     VG +H+D     P
Sbjct: 624 VLFGDVEPAGRLPQTFPKALTDNSAITDDPSIYPGQDGHVRYAEGIFVGYRHHDTREIEP 683

Query: 191 LFPFGFGL 168
           LFPFGFGL
Sbjct: 684 LFPFGFGL 691



to top

>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 845

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 24/128 (18%)
 Frame = -1

Query: 476 DNLNLTIPAPGPSVIQNVCKS-VRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSE-GQG 303
           D  N+ +P     +++ V K+    V+V  SG P V  P++   +A V AW  G+E G  
Sbjct: 593 DRENMDLPKRTNELVRAVLKANPNTVIVNQSGTP-VEFPWLEEANALVQAWYGGNELGNA 651

Query: 302 VADVLFGDYGFSGKLARTW-FKSADQ----------------LPMNVGDKHYDPL----- 189
           +ADVL+GD   +GKL+ +W FK  D                   + VG ++Y+ L     
Sbjct: 652 IADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVVYGEDIFVGYRYYEKLQRKVA 711

Query: 188 FPFGFGLT 165
           FPFG+GL+
Sbjct: 712 FPFGYGLS 719



to top

>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)|
           (Fragment)
          Length = 461

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 26/130 (20%)
 Frame = -1

Query: 476 DNLNLTIPAPGPSVIQNVCKSVR--CVVVLISGRPLVV-----EPYISAMDAFVAAWLPG 318
           D   L +P     ++  V ++ R   ++VL+SG P+ V     +P ISA+   +    PG
Sbjct: 188 DRAGLLLPGHQQELVSRVARASRGPTILVLMSGGPIDVTFAKNDPRISAI---IWVGYPG 244

Query: 317 SEG-QGVADVLFGDYGFSGKLARTWFKS--ADQLPMNVGDKHYDP--------------- 192
             G   +A+VLFG     GKL  TW+       LPM       DP               
Sbjct: 245 QAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYIGP 304

Query: 191 -LFPFGFGLT 165
            +FPFG GL+
Sbjct: 305 VVFPFGLGLS 314



to top

>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)|
           (Beta-D-glucoside glucohydrolase) (Fragment)
          Length = 192

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = -1

Query: 446 GPSVIQNVCKSVRCVVVLISG-RPLVVEPYISAMDAFVAAW--LPGSE-GQGVADVLFGD 279
           G +++Q V  +    +V ++    ++ E +I   +     W  LPG E G  VAD+L+G 
Sbjct: 76  GDALVQAVADANENTIVAVNTVGAIITEAWIEHPNVKAVVWSGLPGQEAGNSVADILYGA 135

Query: 278 YGFSGKLARTWFKSADQLPMNV 213
           Y  SG+L  T  KSAD  P  V
Sbjct: 136 YNPSGRLPYTIAKSADDYPAQV 157



to top

>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)|
           (Gentiobiase) (Cellobiase) (Beta-D-glucoside
           glucohydrolase)
          Length = 754

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
 Frame = -1

Query: 476 DNLNLTIPAPGPSVIQNVCK-SVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGV 300
           D  +++IP     +I+ V +     VVVL++G P+ + P+I  + + + A+L G    G 
Sbjct: 423 DRTHMSIPENQNRLIEAVAEVQSNIVVVLLNGSPVEM-PWIDKVKSVLEAYLGGQALGGR 481

Query: 299 ADVLFGDYGFSGKLARTWFKSADQLP-----------------MNVGDKHYD-----PLF 186
             + +      GKLA T+       P                 + VG ++YD     PLF
Sbjct: 482 WRMCYSVKSIVGKLAETFPVKLSHNPSYLNFPGEDDRVEYKEGLFVGYRYYDTKGIEPLF 541

Query: 185 PFGFGLT 165
           PFG GL+
Sbjct: 542 PFGHGLS 548



to top

>BGL1_ASPAC (P48825) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 860

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -1

Query: 476 DNLNLTIPAPGPSVIQ---NVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAW--LPGSE 312
           D  NLT+   G ++I+   N C +   +VV+ S  P++V+ +    +     W  LPG E
Sbjct: 520 DRNNLTLWKNGDNLIKAAANNCNNT--IVVIHSVGPVLVDEWYDHPNVTAILWAGLPGQE 577

Query: 311 -GQGVADVLFGDYGFSGKLARTWFKSAD 231
            G  +ADVL+G      K   TW K+ +
Sbjct: 578 SGNSLADVLYGRVNPGAKSPFTWGKTRE 605



to top

>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 825

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
 Frame = -1

Query: 467 NLTIPAPGPSVIQNVCK-SVRCVVVLISGRPLVVEPYI---SAMDAFVAAWLPGSEGQGV 300
           NLT+      +I+N+   +   +V++ SG+ + +EP+I   +      +++L    G  +
Sbjct: 537 NLTLWHNAVPLIKNISSINNNTIVIVTSGQQIDLEPFIDNENVTAVIYSSYLGQDFGTVL 596

Query: 299 ADVLFGDYGFSGKLARTWFKSA-DQLPM 219
           A VLFGD   SGKL  T  K   D +P+
Sbjct: 597 AKVLFGDENPSGKLPFTIAKDVNDYIPV 624



to top

>Y2036_BORPE (Q7VWZ5) UPF0225 protein BP2036|
          Length = 133

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 340 SSPRGCPARRARAWPTCC 287
           SSP GCP  + RA+P CC
Sbjct: 6   SSPAGCPCGKPRAYPDCC 23



to top

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/58 (32%), Positives = 22/58 (37%)
 Frame = +3

Query: 237  RLEPRPRQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVRLHHQRPAGDEHHHAP 410
            RL P PR  P  P         + A   G    D RV   +  L+H  P    HHH P
Sbjct: 944  RLTPSPRGGPFNPGSGGPLPASSPATFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPP 1001



to top

>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 262 FPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLP 387
           FP  P +P S      P+ PG HA  +++    YG+TT G P
Sbjct: 535 FPSAPPTPGSQ-----PTTPGVHAPGSSTPGGSYGTTTPGTP 571



to top

>GCSP_YEAST (P49095) Glycine dehydrogenase [decarboxylating], mitochondrial|
           precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine
           cleavage system P-protein)
          Length = 1034

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 23  TSARLHRSFIANKSTTKRNVCMYPIS-HSHSP 115
           T  R+ RS++ +K    RNVC+ P+S H  +P
Sbjct: 643 TGLRVIRSYLESKGENHRNVCLIPVSAHGTNP 674



to top

>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)|
          Length = 1002

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +3

Query: 216 VHRQLVRRLEPRP-RQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVRLHHQRPAGD 392
           +H +    + P P    PGE +       H L     +  G E   G + + HH+ P   
Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELE----EHEGPEHHRGPEDKEHHKGPKDK 371

Query: 393 EHHHAPDALAHVLDHRG 443
           EHH  P    H   H+G
Sbjct: 372 EHHKGPKDKEH---HKG 385



to top

>MEP1B_RAT (P28826) Meprin A beta-subunit precursor (EC 3.4.24.18)|
           (Endopeptidase-2)
          Length = 704

 Score = 24.6 bits (52), Expect(2) = 5.4
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = -1

Query: 473 NLNLTIPAPGP----SVIQNVCKSVRC 405
           +LN T   PGP    S + N C  V C
Sbjct: 590 HLNSTAAVPGPVPTTSTVHNACSEVEC 616



 Score = 23.1 bits (48), Expect(2) = 5.4
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -2

Query: 424 CARASGAWWCSSPAGRWWW 368
           C    G   C  PAG  WW
Sbjct: 622 CTLQEGRAECKCPAGEDWW 640



to top

>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)|
          Length = 210

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 VRRLEPRPRQLPGEPVVAEQHVGHALALRAGQPRG 335
           ++R E  PR  PGE   A Q  G A   RAG+P G
Sbjct: 1   MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSG 35



to top

>Y3385_BORBR (Q7WH25) UPF0225 protein BB3385|
          Length = 133

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 340 SSPRGCPARRARAWPTCC 287
           SSP  CP  + RA+P CC
Sbjct: 6   SSPAACPCGKPRAYPDCC 23



to top

>Y1723_BORPA (Q7W9N2) UPF0225 protein BPP1723|
          Length = 133

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 340 SSPRGCPARRARAWPTCC 287
           SSP  CP  + RA+P CC
Sbjct: 6   SSPAACPCGKPRAYPDCC 23



to top

>ACPD_VIBPA (Q87PP9) Putative acyl carrier protein phosphodiesterase (EC|
           3.1.4.14) (ACP phosphodiesterase)
          Length = 194

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 290 LFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTT 162
           + GDY  S KL   + K+ DQ  + V D   +PL    F + T
Sbjct: 11  ILGDYSQSNKLVEDFIKNVDQDKLTVRDLAANPLPVLDFAVAT 53



to top

>VCAP_EBV (P03226) Major capsid protein (MCP)|
          Length = 1381

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +1

Query: 148 HFLASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGS 327
           HF+A +V             SP   GS  +DL  V A   + P  P S +      + G+
Sbjct: 333 HFMARIVD------------SPEKAGSTKSDLPAVAAGVEDQPRVPISAAVI----KLGN 376

Query: 328 HAATNASMALMYGSTTSGLP 387
           HA    S+  MY  T S  P
Sbjct: 377 HAVAVESLQKMYNDTQSPYP 396



to top

>HOLB_PSEAE (P52024) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 328

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 LEPRPRQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVR 365
           LE   R LP EP  A + +   LAL  G P   +R+HG  VR
Sbjct: 171 LEWLARALPDEPAEALEEL---LALSGGSPLTAQRLHGQGVR 209



to top

>GLP1_CAEEL (P13508) Protein glp-1 precursor|
          Length = 1295

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 19/85 (22%), Positives = 29/85 (34%)
 Frame = +1

Query: 58   QINHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSA 237
            Q NH +QC  + + +   PN  RH   + T +          G+  S     T    +  
Sbjct: 819  QSNHSSQCSLLDNSAYYHPNTKRHCSDYSTGY---------NGEQYSQIYPQTLANGYPG 869

Query: 238  DLNHVRASFPENP*SPNSTSATPWP 312
            D N +   F     +P    A   P
Sbjct: 870  DYNELNFDFQSETFAPADLPADEIP 894



to top

>HOX3_BRAFL (P50901) Homeobox protein HOX3|
          Length = 411

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 25/89 (28%), Positives = 34/89 (38%)
 Frame = +1

Query: 64  NHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSADL 243
           N       +  L Q+QP  S++ P H  H L     P+  G + S  +SP    S     
Sbjct: 241 NMSNHMSMMGSLQQTQPAYSQYPPPHLNHSLPHQAPPHSVGLTMSGPVSPQCYQS----- 295

Query: 244 NHVRASFPENP*SPNSTSATPWPSEPGSH 330
           NH          SP   S+ P P   G+H
Sbjct: 296 NH----------SPCPPSSAPHPVPMGNH 314



to top

>Y484_TREPA (O83497) Hypothetical protein TP0484|
          Length = 671

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 382 GRWWWSRTSAPWTRSSPRGCPARRAR 305
           GRW+W       T S+PR    RRAR
Sbjct: 307 GRWFWRLVPQNGTASAPRSFSVRRAR 332



to top

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 470  LNLTIPAPGPSVIQNVCKSVRCVV 399
            LN TI  PG SV+ ++C + RC+V
Sbjct: 2584 LNGTIIGPGKSVMVDLCTTCRCIV 2607



to top

>MFS14_MAIZE (Q01900) MFS14 protein precursor|
          Length = 126

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 397 CSSPAGRWWWSRTSAPWTRSSPRGCPARRARAWPTCCS 284
           C+S     W S T+ P   +SP+      A  W  CC+
Sbjct: 74  CTSAPAAPWASSTACPAGATSPKPTAPLEAGTWHACCN 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,435,411
Number of Sequences: 219361
Number of extensions: 1295503
Number of successful extensions: 4837
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4792
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top