Clone Name | rbaet95d04 |
---|---|
Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 63.2 bits (152), Expect = 3e-10 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 23/124 (18%) Frame = -1 Query: 467 NLTIPAPGPSVIQNVCKSVR-CVVVLISGRPLVVEPYISAMDAFVAAWLPGSEG-QGVAD 294 N+TIP +I + + + V+VL++GRPL + DA + W G+EG +AD Sbjct: 524 NITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIAD 583 Query: 293 VLFGDYGFSGKLARTWFKSADQLP-----MNVG----------------DKHYDPLFPFG 177 VLFGDY SGKL ++ +S Q+P +N G D+ PL+PFG Sbjct: 584 VLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSRYFDEANGPLYPFG 643 Query: 176 FGLT 165 +GL+ Sbjct: 644 YGLS 647
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 59.3 bits (142), Expect = 5e-09 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 22/102 (21%) Frame = -1 Query: 404 VVVLISGRPLVVEPYISAMDAFVAAWLPGSEG-QGVADVLFGDYGFSGKLARTWFKSADQ 228 V+VL++GRPL + DA + W G+EG +ADVLFGDY SGKL ++ +S Q Sbjct: 546 VLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQ 605 Query: 227 LP-----MNVG----------------DKHYDPLFPFGFGLT 165 +P +N G D+ L+PFG+GL+ Sbjct: 606 IPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLS 647
>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 818 Score = 51.6 bits (122), Expect = 1e-06 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 28/128 (21%) Frame = -1 Query: 467 NLTIPAPGPSVIQNVCKS-VRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSE-GQGVAD 294 ++ +P +I+ V ++ VVVL +G P+ + P++ + A + W PG E G +AD Sbjct: 565 DMRLPGRQEELIEAVAETNPNVVVVLQTGGPIEM-PWLGKVRAVLQMWYPGQELGNALAD 623 Query: 293 VLFGDYGFSGKLARTWFKS-ADQLPMN--------------------VGDKHYD-----P 192 VLFGD +G+L +T+ K+ D + VG +H+D P Sbjct: 624 VLFGDVEPAGRLPQTFPKALTDNSAITDDPSIYPGQDGHVRYAEGIFVGYRHHDTREIEP 683 Query: 191 LFPFGFGL 168 LFPFGFGL Sbjct: 684 LFPFGFGL 691
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 51.6 bits (122), Expect = 1e-06 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 24/128 (18%) Frame = -1 Query: 476 DNLNLTIPAPGPSVIQNVCKS-VRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSE-GQG 303 D N+ +P +++ V K+ V+V SG P V P++ +A V AW G+E G Sbjct: 593 DRENMDLPKRTNELVRAVLKANPNTVIVNQSGTP-VEFPWLEEANALVQAWYGGNELGNA 651 Query: 302 VADVLFGDYGFSGKLARTW-FKSADQ----------------LPMNVGDKHYDPL----- 189 +ADVL+GD +GKL+ +W FK D + VG ++Y+ L Sbjct: 652 IADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVVYGEDIFVGYRYYEKLQRKVA 711 Query: 188 FPFGFGLT 165 FPFG+GL+ Sbjct: 712 FPFGYGLS 719
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 43.5 bits (101), Expect = 3e-04 Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 26/130 (20%) Frame = -1 Query: 476 DNLNLTIPAPGPSVIQNVCKSVR--CVVVLISGRPLVV-----EPYISAMDAFVAAWLPG 318 D L +P ++ V ++ R ++VL+SG P+ V +P ISA+ + PG Sbjct: 188 DRAGLLLPGHQQELVSRVARASRGPTILVLMSGGPIDVTFAKNDPRISAI---IWVGYPG 244 Query: 317 SEG-QGVADVLFGDYGFSGKLARTWFKS--ADQLPMNVGDKHYDP--------------- 192 G +A+VLFG GKL TW+ LPM DP Sbjct: 245 QAGGTAIANVLFGTANPGGKLPMTWYPQNYVTHLPMTDMAMRADPARGYPGRTYRFYIGP 304 Query: 191 -LFPFGFGLT 165 +FPFG GL+ Sbjct: 305 VVFPFGLGLS 314
>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) (Fragment) Length = 192 Score = 42.7 bits (99), Expect = 5e-04 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -1 Query: 446 GPSVIQNVCKSVRCVVVLISG-RPLVVEPYISAMDAFVAAW--LPGSE-GQGVADVLFGD 279 G +++Q V + +V ++ ++ E +I + W LPG E G VAD+L+G Sbjct: 76 GDALVQAVADANENTIVAVNTVGAIITEAWIEHPNVKAVVWSGLPGQEAGNSVADILYGA 135 Query: 278 YGFSGKLARTWFKSADQLPMNV 213 Y SG+L T KSAD P V Sbjct: 136 YNPSGRLPYTIAKSADDYPAQV 157
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 37.7 bits (86), Expect = 0.015 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 23/127 (18%) Frame = -1 Query: 476 DNLNLTIPAPGPSVIQNVCK-SVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGV 300 D +++IP +I+ V + VVVL++G P+ + P+I + + + A+L G G Sbjct: 423 DRTHMSIPENQNRLIEAVAEVQSNIVVVLLNGSPVEM-PWIDKVKSVLEAYLGGQALGGR 481 Query: 299 ADVLFGDYGFSGKLARTWFKSADQLP-----------------MNVGDKHYD-----PLF 186 + + GKLA T+ P + VG ++YD PLF Sbjct: 482 WRMCYSVKSIVGKLAETFPVKLSHNPSYLNFPGEDDRVEYKEGLFVGYRYYDTKGIEPLF 541 Query: 185 PFGFGLT 165 PFG GL+ Sbjct: 542 PFGHGLS 548
>BGL1_ASPAC (P48825) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 860 Score = 36.2 bits (82), Expect = 0.045 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Frame = -1 Query: 476 DNLNLTIPAPGPSVIQ---NVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAW--LPGSE 312 D NLT+ G ++I+ N C + +VV+ S P++V+ + + W LPG E Sbjct: 520 DRNNLTLWKNGDNLIKAAANNCNNT--IVVIHSVGPVLVDEWYDHPNVTAILWAGLPGQE 577 Query: 311 -GQGVADVLFGDYGFSGKLARTWFKSAD 231 G +ADVL+G K TW K+ + Sbjct: 578 SGNSLADVLYGRVNPGAKSPFTWGKTRE 605
>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 825 Score = 34.3 bits (77), Expect = 0.17 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = -1 Query: 467 NLTIPAPGPSVIQNVCK-SVRCVVVLISGRPLVVEPYI---SAMDAFVAAWLPGSEGQGV 300 NLT+ +I+N+ + +V++ SG+ + +EP+I + +++L G + Sbjct: 537 NLTLWHNAVPLIKNISSINNNTIVIVTSGQQIDLEPFIDNENVTAVIYSSYLGQDFGTVL 596 Query: 299 ADVLFGDYGFSGKLARTWFKSA-DQLPM 219 A VLFGD SGKL T K D +P+ Sbjct: 597 AKVLFGDENPSGKLPFTIAKDVNDYIPV 624
>Y2036_BORPE (Q7VWZ5) UPF0225 protein BP2036| Length = 133 Score = 31.6 bits (70), Expect = 1.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 Query: 340 SSPRGCPARRARAWPTCC 287 SSP GCP + RA+P CC Sbjct: 6 SSPAGCPCGKPRAYPDCC 23
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/58 (32%), Positives = 22/58 (37%) Frame = +3 Query: 237 RLEPRPRQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVRLHHQRPAGDEHHHAP 410 RL P PR P P + A G D RV + L+H P HHH P Sbjct: 944 RLTPSPRGGPFNPGSGGPLPASSPATFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPP 1001
>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)| (Autophagy-related protein 26) Length = 1424 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 262 FPENP*SPNSTSATPWPSEPGSHAATNASMALMYGSTTSGLP 387 FP P +P S P+ PG HA +++ YG+TT G P Sbjct: 535 FPSAPPTPGSQ-----PTTPGVHAPGSSTPGGSYGTTTPGTP 571
>GCSP_YEAST (P49095) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1034 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 23 TSARLHRSFIANKSTTKRNVCMYPIS-HSHSP 115 T R+ RS++ +K RNVC+ P+S H +P Sbjct: 643 TGLRVIRSYLESKGENHRNVCLIPVSAHGTNP 674
>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)| Length = 1002 Score = 29.6 bits (65), Expect = 4.2 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Frame = +3 Query: 216 VHRQLVRRLEPRP-RQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVRLHHQRPAGD 392 +H + + P P PGE + H L + G E G + + HH+ P Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELE----EHEGPEHHRGPEDKEHHKGPKDK 371 Query: 393 EHHHAPDALAHVLDHRG 443 EHH P H H+G Sbjct: 372 EHHKGPKDKEH---HKG 385
>MEP1B_RAT (P28826) Meprin A beta-subunit precursor (EC 3.4.24.18)| (Endopeptidase-2) Length = 704 Score = 24.6 bits (52), Expect(2) = 5.4 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%) Frame = -1 Query: 473 NLNLTIPAPGP----SVIQNVCKSVRC 405 +LN T PGP S + N C V C Sbjct: 590 HLNSTAAVPGPVPTTSTVHNACSEVEC 616 Score = 23.1 bits (48), Expect(2) = 5.4 Identities = 8/19 (42%), Positives = 8/19 (42%) Frame = -2 Query: 424 CARASGAWWCSSPAGRWWW 368 C G C PAG WW Sbjct: 622 CTLQEGRAECKCPAGEDWW 640
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +3 Query: 231 VRRLEPRPRQLPGEPVVAEQHVGHALALRAGQPRG 335 ++R E PR PGE A Q G A RAG+P G Sbjct: 1 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSG 35
>Y3385_BORBR (Q7WH25) UPF0225 protein BB3385| Length = 133 Score = 29.3 bits (64), Expect = 5.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 340 SSPRGCPARRARAWPTCC 287 SSP CP + RA+P CC Sbjct: 6 SSPAACPCGKPRAYPDCC 23
>Y1723_BORPA (Q7W9N2) UPF0225 protein BPP1723| Length = 133 Score = 29.3 bits (64), Expect = 5.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 340 SSPRGCPARRARAWPTCC 287 SSP CP + RA+P CC Sbjct: 6 SSPAACPCGKPRAYPDCC 23
>ACPD_VIBPA (Q87PP9) Putative acyl carrier protein phosphodiesterase (EC| 3.1.4.14) (ACP phosphodiesterase) Length = 194 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -1 Query: 290 LFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGLTT 162 + GDY S KL + K+ DQ + V D +PL F + T Sbjct: 11 ILGDYSQSNKLVEDFIKNVDQDKLTVRDLAANPLPVLDFAVAT 53
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 28.9 bits (63), Expect = 7.2 Identities = 24/80 (30%), Positives = 32/80 (40%) Frame = +1 Query: 148 HFLASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGS 327 HF+A +V SP GS +DL V A + P P S + + G+ Sbjct: 333 HFMARIVD------------SPEKAGSTKSDLPAVAAGVEDQPRVPISAAVI----KLGN 376 Query: 328 HAATNASMALMYGSTTSGLP 387 HA S+ MY T S P Sbjct: 377 HAVAVESLQKMYNDTQSPYP 396
>HOLB_PSEAE (P52024) DNA polymerase III delta' subunit (EC 2.7.7.7)| Length = 328 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +3 Query: 240 LEPRPRQLPGEPVVAEQHVGHALALRAGQPRGDERVHGADVR 365 LE R LP EP A + + LAL G P +R+HG VR Sbjct: 171 LEWLARALPDEPAEALEEL---LALSGGSPLTAQRLHGQGVR 209
>GLP1_CAEEL (P13508) Protein glp-1 precursor| Length = 1295 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/85 (22%), Positives = 29/85 (34%) Frame = +1 Query: 58 QINHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSA 237 Q NH +QC + + + PN RH + T + G+ S T + Sbjct: 819 QSNHSSQCSLLDNSAYYHPNTKRHCSDYSTGY---------NGEQYSQIYPQTLANGYPG 869 Query: 238 DLNHVRASFPENP*SPNSTSATPWP 312 D N + F +P A P Sbjct: 870 DYNELNFDFQSETFAPADLPADEIP 894
>HOX3_BRAFL (P50901) Homeobox protein HOX3| Length = 411 Score = 28.5 bits (62), Expect = 9.4 Identities = 25/89 (28%), Positives = 34/89 (38%) Frame = +1 Query: 64 NHKTQCMYVSHLSQSQPNRSRHIPSHPTHFLASVVRPNPKGKSGS*CLSPTFIGSWSADL 243 N + L Q+QP S++ P H H L P+ G + S +SP S Sbjct: 241 NMSNHMSMMGSLQQTQPAYSQYPPPHLNHSLPHQAPPHSVGLTMSGPVSPQCYQS----- 295 Query: 244 NHVRASFPENP*SPNSTSATPWPSEPGSH 330 NH SP S+ P P G+H Sbjct: 296 NH----------SPCPPSSAPHPVPMGNH 314
>Y484_TREPA (O83497) Hypothetical protein TP0484| Length = 671 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 382 GRWWWSRTSAPWTRSSPRGCPARRAR 305 GRW+W T S+PR RRAR Sbjct: 307 GRWFWRLVPQNGTASAPRSFSVRRAR 332
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 470 LNLTIPAPGPSVIQNVCKSVRCVV 399 LN TI PG SV+ ++C + RC+V Sbjct: 2584 LNGTIIGPGKSVMVDLCTTCRCIV 2607
>MFS14_MAIZE (Q01900) MFS14 protein precursor| Length = 126 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = -2 Query: 397 CSSPAGRWWWSRTSAPWTRSSPRGCPARRARAWPTCCS 284 C+S W S T+ P +SP+ A W CC+ Sbjct: 74 CTSAPAAPWASSTACPAGATSPKPTAPLEAGTWHACCN 111 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,435,411 Number of Sequences: 219361 Number of extensions: 1295503 Number of successful extensions: 4837 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4552 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4792 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)