ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 68 1e-11
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 55 9e-08
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 42 6e-04
4SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-... 32 0.79
5SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-2... 32 0.79
6SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-2... 31 1.0
7APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 30 2.3
8OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 30 2.3
9FIBL_GALME (Q26427) Fibroin light chain precursor (Fib-L) (L-fib... 29 3.9
10DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-re... 29 3.9
11AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein 28 6.7
12ITA10_HUMAN (O75578) Integrin alpha-10 precursor 28 8.8
13FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcript... 28 8.8

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 42/95 (44%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
 Frame = -2

Query: 418 SFAKNPKQFGFEQGPLKTCCGGGGPYNFNPTASCG-----------VRGSSVCADPSAYA 272
           S    P++ GFE  PL TCCG GG YNF+ TA CG           V GS  CA PS   
Sbjct: 288 SLFSEPEKHGFEF-PLITCCGYGGKYNFSVTAPCGDTVTADDGTKIVVGS--CACPSVRV 344

Query: 271 NWDGVHLTEAAYHAIADSILHGPYTSPRLL*PPAC 167
           NWDG H TEAA     D I  G ++ P +    AC
Sbjct: 345 NWDGAHYTEAANEYFFDQISTGAFSDPPVPLNMAC 379



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = -2

Query: 382 QGPLKTCCGGGGPYNFNPTASCG----VRGSSV-----CADPSAYANWDGVHLTEAAYHA 230
           +G L +CCG GG YN+N    CG    V+G  V     C +P     WDGVH T+AA   
Sbjct: 297 KGSLVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKF 356

Query: 229 IADSILHG 206
           I D I  G
Sbjct: 357 IFDKIAPG 364



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = -2

Query: 409 KNPKQFGFEQGPLKTCCGGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEAAYHA 230
           + P  +GFE+   K CC  G     +  A C    S +C + S+Y  WDGVH T+ AY  
Sbjct: 464 ETPAAYGFEETK-KPCCKTG---LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKT 519

Query: 229 I 227
           I
Sbjct: 520 I 520



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>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1197

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 276 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGPCS 386
           Y DG    L P +PQ    V     GPPPP   +SGP S
Sbjct: 496 YGDGYGFRLPPSSPQKLADVSAPSGGPPPPHSPYSGPPS 534



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>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1250

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 276 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGPCS 386
           Y DG    L P +PQ    V     GPPPP   +SGP S
Sbjct: 528 YGDGYGFRLPPSSPQKLADVSAPSGGPPPPHSPYSGPPS 566



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>SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-25-interacting|
           protein) (SNIP)
          Length = 1055

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 276 YADGSAHTLDPRTPQLA--VGLKLYGPPPPQHVFSGPCS 386
           Y DG    L P +PQ    V     GPPPP   +SGP S
Sbjct: 334 YGDGYGFRLPPSSPQKLADVAAPPGGPPPPHSPYSGPPS 372



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -2

Query: 409 KNPKQFGFEQGPLKTCCG----GGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEA 242
           ++P+ +GFE+   K CC      GG +       C  R     ++ S+Y  WDG+H ++ 
Sbjct: 381 ESPEDYGFEEIK-KPCCKIGLTKGGVF-------CKERTLKNMSNASSYLFWDGLHPSQR 432

Query: 241 AY 236
           AY
Sbjct: 433 AY 434



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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 261 PSQLAYADGSAHTLDPRTPQLAVGLKLYGPPPPQHVFSG---PCSNP 392
           P   + + GS H L P +P     L+   PPPP HV +G   P S+P
Sbjct: 412 PGGSSPSPGSGHPLPPASPHHVPPLQ-QQPPPPPHVSAGGPPPSSSP 457



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>FIBL_GALME (Q26427) Fibroin light chain precursor (Fib-L) (L-fibroin) (PG-1)|
          Length = 267

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 412 AKNPKQFGFEQGPLKTCCGGGGPYNF 335
           A NP    +  GP   C GGG  Y F
Sbjct: 146 ASNPDSLRYSSGPAGNCAGGGRSYQF 171



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>DIAP3_HUMAN (Q9NSV4) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3)
          Length = 1110

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
 Frame = +3

Query: 285 GSAHTLDPRTPQLAVGLKLYGPPPP---------QHVFSGPCSNPNCLGFL 410
           G+ H+  P  P L  G  +  PPPP         +  FSGP   P  LGFL
Sbjct: 569 GTGHSALPPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPPPPLGFL 619



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>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein|
          Length = 333

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -2

Query: 391 GFEQGPLKTCCGGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHLTEAAYHAIADSIL 212
           G    P + C GGGG    +P  SCGV   ++ + P+A  +      +  +  + A S  
Sbjct: 67  GCTLSPPQGCGGGGGGIALSPPPSCGV--GTLLSTPAAATS------SSPSSSSAASSSS 118

Query: 211 HGPYTSPRLL*PPACFCFCFSSVLAC 134
            G   S +++      CFCF  VL C
Sbjct: 119 PG---SRKMVVSAEMCCFCF-DVLYC 140



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>ITA10_HUMAN (O75578) Integrin alpha-10 precursor|
          Length = 1167

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 204 GPWRMLSAMAW*AASVRWTPSQLAYADGSAHTLDPRTPQLAVG 332
           G W     M + A+   WT    A  DGS   L PR  +L+VG
Sbjct: 690 GRWDHQFYMRFTASLDEWTAGARAAFDGSGQRLSPRRLRLSVG 732



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>FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcription factor 2)|
           (TTF-2)
          Length = 371

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 358 GGGGPYNFNPTASCGVRGSSVCADPSAYANWDGVHL--TEAAYHAIADSILHGPYTSP 191
           G  G  +F P    G R  +  A  +AYA  DG +     +A  A A   L GP + P
Sbjct: 250 GAAGTGSFQPAVCTGARPVNPAAYAAAYAGPDGAYPQGASSALFAAAAGRLAGPASPP 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,241,305
Number of Sequences: 219361
Number of extensions: 812701
Number of successful extensions: 2867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2863
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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