Clone Name | rbaet95c12 |
---|---|
Clone Library Name | barley_pub |
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -3 Query: 311 KLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 216 KL G F+WSAD S S+ F YE +AQ ++A+ Sbjct: 244 KLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -3 Query: 311 KLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 216 KL G F+WSAD S S+ F YE +AQ ++A+ Sbjct: 270 KLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301
>SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) (Tec-interacting protein 3) (TIP-3) Length = 211 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -1 Query: 286 RRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSR--RISALVSA 125 RR PS +++SSP P R R P + G + + R R R SAL+ A Sbjct: 21 RRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRSHADYRRITRASALLDA 76
>FINC_CHICK (P11722) Fibronectin (FN) (Fragments)| Length = 1256 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 286 RRTAPSRATTSSPMRPGRRRLSPTID 209 RR P TT++P+RPG RR P +D Sbjct: 1029 RRPVP---TTATPLRPGSRRQPPNVD 1051
>CEF1_ASPFU (Q4WHG0) Pre-mRNA-splicing factor cef1| Length = 792 Score = 28.1 bits (61), Expect = 5.8 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 8/106 (7%) Frame = -1 Query: 301 GSSFGRRTAPSRATTSSPMRPGRRRLSP--------TIDLQTDGIPYLLSIRVRLAKSRR 146 G S G APS A +RPG P TIDL D L R RLA ++ Sbjct: 117 GPSGGEAAAPS-ADDVRRLRPGELDPDPESKPARPDTIDLDEDEKEMLSEARARLANTQG 175 Query: 145 ISALVSARVQSLNPSYECLFAKLLRESGVTTVRTKWMVQE*NEASF 8 A AR + L S + RE + K + ++ E + Sbjct: 176 KKAKRKARERQLEESRRLAVLQKRRELKNAGINIKVVTRKKGEMDY 221
>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor| mot1) (Modifier of transcription 1) Length = 1953 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 287 SADSSKQSDYKFTYETRAQEIVANH*SP 204 SAD +DY FT ++R+ +V H +P Sbjct: 317 SADKKTGADYNFTAQSRSDRLVVEHKAP 344
>TRMB_BDEBA (Q6MQU0) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 209 Score = 28.1 bits (61), Expect = 5.8 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -3 Query: 299 FFIWSADSSKQSDYKFTYETR 237 +F+W+ D +QS YK +ET+ Sbjct: 154 YFLWAMDEIRQSPYKIIFETQ 174
>VOR4_P1AMV (Q07520) 13 kDa protein (ORF 4)| Length = 121 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/59 (28%), Positives = 33/59 (55%) Frame = -1 Query: 280 TAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALVSARVQSLNP 104 T P+ + TS+P+RP R ++P++ + P S LA + ++A ++A + + NP Sbjct: 11 TGPNPSATSAPVRP--RHVTPSLSPSSSSSPSPDSFYYFLAAAVILTAALAAALLTPNP 67
>ENGA_XYLFT (Q87B41) GTP-binding protein engA| Length = 465 Score = 27.7 bits (60), Expect = 7.6 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -1 Query: 241 PGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALVS--ARVQSLNPSYECLFAKLLRE 68 PG R S T+DL+ D + Y L L + ++ V + ++L +C A LL + Sbjct: 210 PGTTRDSITVDLERDELRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLD 269 Query: 67 SG 62 +G Sbjct: 270 AG 271
>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) (RecQ4) (RTS) Length = 1208 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = -1 Query: 301 GSSFGRRTAP---SRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALV 131 G + GRR P + + S+P PG + + +D P L + R + + + A + Sbjct: 120 GPALGRRPWPLGRASSKASTPKPPGTGPVPSFAEKVSDEPPQLPEPQPRPGRLQHLQASL 179 Query: 130 SARVQSLNPSY 98 S R+ SL+P + Sbjct: 180 SQRLGSLDPGW 190
>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component| Exo70) (rExo70) Length = 653 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 12/57 (21%) Frame = -1 Query: 286 RRTAPSRATTSSPMRPGRRRLSPT------------IDLQTDGIPYLLSIRVRLAKS 152 R+++ S SP P +R+ +PT +D++TD + +S VRLA+S Sbjct: 239 RKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVRLAQS 295
>FA47A_HUMAN (Q5JRC9) Protein FAM47A| Length = 778 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -1 Query: 304 RGSSFGRRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISAL 134 R SS + +R T+S P + R + ++ + + S+R L KSRR+S+L Sbjct: 487 RRSSLHSQPPKTRRTSSLRSEPPKTRRTSSLGPEPPKTRRVSSLRPELPKSRRVSSL 543
>IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleacetic acid-induced| protein 15) Length = 212 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 301 GSSFGRRTAPSRATTSSPMRPGRRRLSPTID 209 GSS ++ S +++SSP P R+R S T D Sbjct: 31 GSSSSSSSSSSSSSSSSPSEPDRKRASATDD 61
>FIB2_ADEG1 (Q64762) Fiber protein 2| Length = 410 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/46 (28%), Positives = 19/46 (41%) Frame = -1 Query: 313 TSCRGSSFGRRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLS 176 T C S+ G+ T + + P R +SP + IPY S Sbjct: 286 TQCNPSNIGQGTLEPSNISMTSFEPARNPISPPVFNMNQNIPYYAS 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,845,289 Number of Sequences: 219361 Number of extensions: 810118 Number of successful extensions: 2247 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2247 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)