ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 37 0.016
2CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 37 0.016
3SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1)... 29 2.6
4FINC_CHICK (P11722) Fibronectin (FN) (Fragments) 29 3.4
5CEF1_ASPFU (Q4WHG0) Pre-mRNA-splicing factor cef1 28 5.8
6MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-ass... 28 5.8
7TRMB_BDEBA (Q6MQU0) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 28 5.8
8VOR4_P1AMV (Q07520) 13 kDa protein (ORF 4) 28 5.8
9ENGA_XYLFT (Q87B41) GTP-binding protein engA 28 7.6
10RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) ... 28 7.6
11EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex ... 27 9.9
12FA47A_HUMAN (Q5JRC9) Protein FAM47A 27 9.9
13IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleaceti... 27 9.9
14FIB2_ADEG1 (Q64762) Fiber protein 2 27 9.9

>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -3

Query: 311 KLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 216
           KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 244 KLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275



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>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -3

Query: 311 KLPGFFIWSADSSKQSDYKFTYETRAQEIVAN 216
           KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 270 KLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>SOCS1_HUMAN (O15524) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding|
           protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1)
           (Tec-interacting protein 3) (TIP-3)
          Length = 211

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 286 RRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSR--RISALVSA 125
           RR  PS +++SSP  P R R  P +     G  +  + R      R  R SAL+ A
Sbjct: 21  RRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRSHADYRRITRASALLDA 76



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>FINC_CHICK (P11722) Fibronectin (FN) (Fragments)|
          Length = 1256

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 286  RRTAPSRATTSSPMRPGRRRLSPTID 209
            RR  P   TT++P+RPG RR  P +D
Sbjct: 1029 RRPVP---TTATPLRPGSRRQPPNVD 1051



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>CEF1_ASPFU (Q4WHG0) Pre-mRNA-splicing factor cef1|
          Length = 792

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
 Frame = -1

Query: 301 GSSFGRRTAPSRATTSSPMRPGRRRLSP--------TIDLQTDGIPYLLSIRVRLAKSRR 146
           G S G   APS A     +RPG     P        TIDL  D    L   R RLA ++ 
Sbjct: 117 GPSGGEAAAPS-ADDVRRLRPGELDPDPESKPARPDTIDLDEDEKEMLSEARARLANTQG 175

Query: 145 ISALVSARVQSLNPSYECLFAKLLRESGVTTVRTKWMVQE*NEASF 8
             A   AR + L  S      +  RE     +  K + ++  E  +
Sbjct: 176 KKAKRKARERQLEESRRLAVLQKRRELKNAGINIKVVTRKKGEMDY 221



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>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor|
           mot1) (Modifier of transcription 1)
          Length = 1953

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 287 SADSSKQSDYKFTYETRAQEIVANH*SP 204
           SAD    +DY FT ++R+  +V  H +P
Sbjct: 317 SADKKTGADYNFTAQSRSDRLVVEHKAP 344



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>TRMB_BDEBA (Q6MQU0) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 209

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 299 FFIWSADSSKQSDYKFTYETR 237
           +F+W+ D  +QS YK  +ET+
Sbjct: 154 YFLWAMDEIRQSPYKIIFETQ 174



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>VOR4_P1AMV (Q07520) 13 kDa protein (ORF 4)|
          Length = 121

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -1

Query: 280 TAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALVSARVQSLNP 104
           T P+ + TS+P+RP  R ++P++   +   P   S    LA +  ++A ++A + + NP
Sbjct: 11  TGPNPSATSAPVRP--RHVTPSLSPSSSSSPSPDSFYYFLAAAVILTAALAAALLTPNP 67



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>ENGA_XYLFT (Q87B41) GTP-binding protein engA|
          Length = 465

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 241 PGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALVS--ARVQSLNPSYECLFAKLLRE 68
           PG  R S T+DL+ D + Y L     L +  ++   V   +  ++L    +C  A LL +
Sbjct: 210 PGTTRDSITVDLERDELRYRLVDTAGLRRKSKVEEAVEKFSAFKTLQAIEQCQVAVLLLD 269

Query: 67  SG 62
           +G
Sbjct: 270 AG 271



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>RECQ4_HUMAN (O94761) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4) (RecQ4) (RTS)
          Length = 1208

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 301 GSSFGRRTAP---SRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISALV 131
           G + GRR  P   + +  S+P  PG   +    +  +D  P L   + R  + + + A +
Sbjct: 120 GPALGRRPWPLGRASSKASTPKPPGTGPVPSFAEKVSDEPPQLPEPQPRPGRLQHLQASL 179

Query: 130 SARVQSLNPSY 98
           S R+ SL+P +
Sbjct: 180 SQRLGSLDPGW 190



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>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component|
           Exo70) (rExo70)
          Length = 653

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
 Frame = -1

Query: 286 RRTAPSRATTSSPMRPGRRRLSPT------------IDLQTDGIPYLLSIRVRLAKS 152
           R+++ S     SP  P +R+ +PT            +D++TD   + +S  VRLA+S
Sbjct: 239 RKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIHCVSAFVRLAQS 295



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>FA47A_HUMAN (Q5JRC9) Protein FAM47A|
          Length = 778

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 304 RGSSFGRRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLSIRVRLAKSRRISAL 134
           R SS   +   +R T+S    P + R + ++  +      + S+R  L KSRR+S+L
Sbjct: 487 RRSSLHSQPPKTRRTSSLRSEPPKTRRTSSLGPEPPKTRRVSSLRPELPKSRRVSSL 543



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>IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleacetic acid-induced|
           protein 15)
          Length = 212

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 301 GSSFGRRTAPSRATTSSPMRPGRRRLSPTID 209
           GSS    ++ S +++SSP  P R+R S T D
Sbjct: 31  GSSSSSSSSSSSSSSSSPSEPDRKRASATDD 61



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>FIB2_ADEG1 (Q64762) Fiber protein 2|
          Length = 410

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 313 TSCRGSSFGRRTAPSRATTSSPMRPGRRRLSPTIDLQTDGIPYLLS 176
           T C  S+ G+ T      + +   P R  +SP +      IPY  S
Sbjct: 286 TQCNPSNIGQGTLEPSNISMTSFEPARNPISPPVFNMNQNIPYYAS 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,845,289
Number of Sequences: 219361
Number of extensions: 810118
Number of successful extensions: 2247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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