ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 56 7e-05
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
3gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III ch... 56 7e-05
4gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 56 7e-05
5dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
6dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
7dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
8dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 7e-05
10ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative... 52 0.001
11ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative... 52 0.001
12dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
13dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
14dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
15dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
16dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 4.2
18gb|AC009366.8| Drosophila melanogaster 3L BAC RP98-48E10 (Roswel... 40 4.2
19gb|AC023676.4| Drosophila melanogaster 3L BAC RP98-22C11 (Roswel... 40 4.2
20gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78... 40 4.2 
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                         
Query: 208   gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
             ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 16429 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 16370

                                                         
Query: 268   tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
               | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 16369 accatggagctatccgctgaccagatgaacaaccccggcagctt 16326



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 274   gagctgtccgccgaccaaatgaagaaccccggcagctt 311
             ||||||||||||||||| ||||| || |||||||||||
Sbjct: 28815 gagctgtccgccgaccagatgaacaatcccggcagctt 28778
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                            
Query: 208      gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
                ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 14076791 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 14076732

                                                            
Query: 268      tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
                  | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 14076731 accatggagctatccgctgaccagatgaacaaccccggcagctt 14076688



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 274      gagctgtccgccgaccaaatgaagaaccccggcagctt 311
                ||||||||||||||||| ||||| || |||||||||||
Sbjct: 14089177 gagctgtccgccgaccagatgaacaatcccggcagctt 14089140
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>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene,
           complete cds
          Length = 1038

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
           ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 914 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 855

                                                       
Query: 268 tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
             | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 854 accatggagctatccgctgaccagatgaacaaccccggcagctt 811
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                         
Query: 208   gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
             ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 92920 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 92861

                                                         
Query: 268   tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
               | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 92860 accatggagctatccgctgaccagatgaacaaccccggcagctt 92817



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 274    gagctgtccgccgaccaaatgaagaaccccggcagctt 311
              ||||||||||||||||| ||||| || |||||||||||
Sbjct: 105306 gagctgtccgccgaccagatgaacaatcccggcagctt 105269
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>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full
           insert sequence
          Length = 989

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
           ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 919 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 860

                                                       
Query: 268 tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
             | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 859 accatggagctatccgctgaccagatgaacaaccccggcagctt 816
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>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full
           insert sequence
          Length = 1053

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
           ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 919 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 860

                                                       
Query: 268 tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
             | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 859 accatggagctatccgctgaccagatgaacaaccccggcagctt 816
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>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full
           insert sequence
          Length = 1026

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
           ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 919 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 860

                                                       
Query: 268 tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
             | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 859 accatggagctatccgctgaccagatgaacaaccccggcagctt 816
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>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full
           insert sequence
          Length = 1069

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                       
Query: 208 gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
           ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 919 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 860

                                                       
Query: 268 tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
             | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 859 accatggagctatccgctgaccagatgaacaaccccggcagctt 816
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 85/104 (81%)
 Strand = Plus / Minus

                                                                            
Query: 208      gatcaatggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctc 267
                ||||| ||||||||||| |||||||| ||| ||||||| ||    |||||||||  ||| 
Sbjct: 14085033 gatcagtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctg 14084974

                                                            
Query: 268      tgcttggagctgtccgccgaccaaatgaagaaccccggcagctt 311
                  | ||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 14084973 accatggagctatccgctgaccagatgaacaaccccggcagctt 14084930



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 274      gagctgtccgccgaccaaatgaagaaccccggcagctt 311
                ||||||||||||||||| ||||| || |||||||||||
Sbjct: 14097419 gagctgtccgccgaccagatgaacaatcccggcagctt 14097382
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>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.12), mRNA
          Length = 867

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 803 gagctgtccgccgaccagatgaacaatcccggcagctt 766
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>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.10), mRNA
          Length = 861

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 214 tggttggcgacaatctcctgcgccctggtctcataggtgaacttgtagtcgctctgcttg 273
           ||||||||||| |||||||| ||| ||||||| ||    |||||||||  |||   | ||
Sbjct: 857 tggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgaccatg 798

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 797 gagctatccgctgaccagatgaacaaccccggcagctt 760
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>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full
           insert sequence
          Length = 1089

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 827 gagctgtccgccgaccagatgaacaatcccggcagctt 790
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>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full
           insert sequence
          Length = 1108

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 822 gagctgtccgccgaccagatgaacaatcccggcagctt 785
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>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full
           insert sequence
          Length = 1069

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 827 gagctgtccgccgaccagatgaacaatcccggcagctt 790
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>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full
           insert sequence
          Length = 1068

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 826 gagctgtccgccgaccagatgaacaatcccggcagctt 789
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>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full
           insert sequence
          Length = 1134

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 274 gagctgtccgccgaccaaatgaagaaccccggcagctt 311
           ||||||||||||||||| ||||| || |||||||||||
Sbjct: 827 gagctgtccgccgaccagatgaacaatcccggcagctt 790
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     tgaagaaccccggcagcttg 312
               ||||||||||||||||||||
Sbjct: 3442684 tgaagaaccccggcagcttg 3442665
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>gb|AC009366.8| Drosophila melanogaster 3L BAC RP98-48E10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ttcatttcattcctgaacca 36
              ||||||||||||||||||||
Sbjct: 164970 ttcatttcattcctgaacca 164989
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>gb|AC023676.4| Drosophila melanogaster 3L BAC RP98-22C11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179613

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ttcatttcattcctgaacca 36
              ||||||||||||||||||||
Sbjct: 118500 ttcatttcattcctgaacca 118519
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>gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78 of 83 of the complete
              sequence
          Length = 365612

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ttcatttcattcctgaacca 36
              ||||||||||||||||||||
Sbjct: 297862 ttcatttcattcctgaacca 297881


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,989,502
Number of Sequences: 3902068
Number of extensions: 1989502
Number of successful extensions: 44967
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44914
Number of HSP's gapped (non-prelim): 53
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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