ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95c09 |
|---|---|
| Clone Library Name | barley_pub |
>HAP5_SCHPO (P79007) Transcriptional activator hap5| Length = 415 Score = 31.6 bits (70), Expect = 1.2 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 26 QFQTPIPDFNPEPKQMSNYALPLHICSPFTSV 121 +FQ P+PD +P N + P+ + SPF +V Sbjct: 43 RFQQPVPDVDPTAVNHYNASAPIEVASPFDNV 74
>TIM_DROHY (O44431) Protein timeless (Fragment)| Length = 676 Score = 30.4 bits (67), Expect = 2.7 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = +2 Query: 23 VQFQTPIPDFNPEPKQMSNYALPLHICSPFTSVRYNFQLHLESTNSIYSSTKHCYYSWAT 202 + ++ + ++ E +S+ PL++ P +V Y +TN++Y+ST + Sbjct: 208 IDYEEQVQEYEQEAAAVSSE--PLNLSQPANNVNY-------TTNAVYASTTATETQTTS 258 Query: 203 ILSASPSLF---FLPRRPIPSAA*KSNSLPFAQPAAHAHHLLDKMSSQAS 343 L A SL F P P+P+ + + +H+H K+ ++S Sbjct: 259 SLCAMTSLCYEPFKPPAPLPTRRNTLSEMLSDNYTSHSHVSAVKLGQKSS 308
>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)| Length = 3866 Score = 30.4 bits (67), Expect = 2.7 Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 17/121 (14%) Frame = +3 Query: 165 TVLQNIAITVGPPSS---LPAQVYSSSPAGPSLLQPKSLIHFLLPSRLHMHT-------- 311 +V++ +GP S L + S P PSL P S +P H+H+ Sbjct: 3009 SVMETNTSVLGPMGSGLTLTTGLNPSLPPSPSLFPPASKGLLSVPHHQHLHSFPAAAQSS 3068 Query: 312 ---TCSTKCQARLVACRARQVDAPPQPVLQRRHAAHRVNL---VATPSSHQAARSLVSLL 473 S+ L+ V PP P L A R +L VATPSS R +S L Sbjct: 3069 FPPNISSPPSGLLIG-----VQPPPDPQLLGSEANQRTDLTTTVATPSSGLKKRP-ISRL 3122 Query: 474 H 476 H Sbjct: 3123 H 3123
>MSH6_MOUSE (P54276) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch-binding protein) (GTBP) (GTMBP) (p160) Length = 1358 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 190 QLGHHPLCQPKSILPPPQAHPFCSLK 267 Q G P+C+P+ +LP HPF K Sbjct: 1065 QGGDGPMCRPEIVLPGEDTHPFLEFK 1090
>HAP1_YEAST (P12351) Heme-responsive zinc finger transcription factor HAP1| (Heme activator protein 1) (CYP1 activatory protein) Length = 1483 Score = 29.6 bits (65), Expect = 4.5 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Frame = +3 Query: 63 QSKCPIMHSHYIFVVHLQVSDTISNYIWNLQIPFTVLQNIAITVGPPSSLPAQVYSSSPA 242 QSKCP+ H +Y+ ++++ SN I + ++N A +LPA +++ P Sbjct: 387 QSKCPVDHRNYMKDYPSDMANSSSNPASRCPIDHSSMKNTA-------ALPASTHNTIPH 439 Query: 243 GPSLLQPKSLIHFLL-PSRLHMHTTCSTKCQARLVACRARQVDAPPQPVL 389 QP+S H P++ H + T+ + C PP+ V+ Sbjct: 440 H----QPQSGSHARSHPAQSRKHDSYMTESEVLATLCEM----LPPKRVI 481
>GSC_DROME (P54366) Homeobox protein goosecoid| Length = 419 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = +3 Query: 378 QPVLQRRHAAHRVNLVATPSSHQAARSLVSLL 473 Q VLQ++HA H+ + TPSS ++S V++L Sbjct: 65 QSVLQQQHAQHQQSQSQTPSSDDGSQSGVTIL 96
>EMS_DROME (P18488) Homeotic protein empty spiracles| Length = 497 Score = 29.6 bits (65), Expect = 4.5 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 9/104 (8%) Frame = +3 Query: 195 GPPSSLPAQ--VYSSSPAGPSL---LQPKSLIHFLLPSRLH----MHTTCSTKCQARLVA 347 GP S P + V S P P L P S H L+ H H + Q L A Sbjct: 49 GPQSPPPGERNVPGSPPQTPPATLTLIPGSPPHHLMAPPAHGLPYPHPHAQQQQQQHLQA 108 Query: 348 CRARQVDAPPQPVLQRRHAAHRVNLVATPSSHQAARSLVSLLHH 479 +P Q + +H + TP SHQ + L+ LHH Sbjct: 109 PHPHPHLSPAQQHVLHQHLLMQHQHPGTPKSHQDIQELLQRLHH 152
>CHEB1_PSESM (Q884V3) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 390 Score = 29.6 bits (65), Expect = 4.5 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 11/71 (15%) Frame = +2 Query: 134 QLHLESTNSIYSSTKHCY----YSWATILSASPSLFFLPRR-PIPSAA*KSNSLPF---- 286 QL E NSI S + S A+ A+P+ L R P PSAA + ++P Sbjct: 120 QLLCEKINSISRSNRRSSGIGSASAASPAPAAPAPSTLSSRAPAPSAAAPARAVPSRTVA 179 Query: 287 --AQPAAHAHH 313 A PAAHAHH Sbjct: 180 PAAAPAAHAHH 190
>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID| domain-containing protein 2) (BRG1-associated factor 200) (BAF200) Length = 1835 Score = 29.3 bits (64), Expect = 5.9 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +3 Query: 177 NIAITVGPPSSLPAQVYSSSPAGPSLLQPKSLIHF--LLPSRLHMHT 311 +IA+ GPP S Q +S+ P +++ ++L+H ++P + +HT Sbjct: 731 SIAVGGGPPQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHT 777
>GRIP1_MOUSE (Q925T6) Glutamate receptor-interacting protein 1 (GRIP1 protein)| Length = 1127 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = +3 Query: 198 PPSSLPAQVYSSSPAGPSLLQPKSLIHFLLPSRLHMHTTCSTKCQARL 341 PP+S PA V SSSP S SL LP L+ + T + RL Sbjct: 395 PPNSPPAMVPSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRL 442
>RT03_MARPO (P26865) Mitochondrial ribosomal protein S3| Length = 430 Score = 28.9 bits (63), Expect = 7.7 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Frame = +3 Query: 36 PQFQISIQSQSKCPIMHSH---YIFVVHLQVSDTISNYIWNL--QIPFT-------VLQN 179 P ++++++ K I S + F + + Y +NL QI F V Q Sbjct: 173 PSILVAVRAEKKKAIFGSEGDFFGFTGRAFLDYFVMQYFFNLKNQIQFDPMVNRSPVAQG 232 Query: 180 IAITVGPPSSLPAQVYSSSPAGPSLLQPKSLIHF 281 +A T ++PA+ + +G S+ QP+S ++F Sbjct: 233 VAKTSMIGKAIPAKTEQGTQSGESICQPRSTLYF 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,908,726 Number of Sequences: 219361 Number of extensions: 1822815 Number of successful extensions: 4977 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4971 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
