ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein 379 e-102
2gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intr... 56 5e-05
3gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.78
4gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.78
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.78
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.78
7dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 42 0.78
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.78
9emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in... 40 3.1
10gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complet... 40 3.1
11gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, comple... 40 3.1
12emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chr... 40 3.1
13emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.1
14emb|AL390091.1|NCB12F1 Neurospora crassa DNA linkage group II BA... 40 3.1
15emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 i... 40 3.1
16gb|AC023310.4| Homo sapiens chromosome 15, clone RP11-336L20, co... 40 3.1
17gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, co... 40 3.1
18gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 40 3.1
19gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, co... 40 3.1
20gb|AC134393.6| Homo sapiens chromosome 15, clone CTC-803A3, comp... 40 3.1
21gb|AC131280.9| Homo sapiens chromosome 15, clone RP11-467L19, co... 40 3.1
22gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, c... 40 3.1
23emb|AL772162.4| Mouse DNA sequence from clone RP23-175J8 on chro... 40 3.1

>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein
          Length = 1020

 Score =  379 bits (191), Expect = e-102
 Identities = 197/199 (98%)
 Strand = Plus / Minus

                                                                        
Query: 37   aattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcacc 96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 aattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcacc 960

                                                                        
Query: 97   acaaactgatggaccgatcgaccctgggaatgggatggattcattcattcaaagcaaact 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  acaaactgatggaccgatcgaccctgggaatgggatggattcattcattcaaagcaaact 900

                                                                        
Query: 157  taaacgactcatgactggaagcaaggggagacccgatcgaccacacggacggacggccgg 216
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 899  taaacgactcatgactggaagcaaggggagacgcgatcgaccacacggacggacgggcgg 840

                               
Query: 217  gcggggggcaggcggcggt 235
            |||||||||||||||||||
Sbjct: 839  gcggggggcaggcggcggt 821



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>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA,
            complete cds
          Length = 1133

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 65/76 (85%), Gaps = 6/76 (7%)
 Strand = Plus / Minus

                                                                        
Query: 3    aactcaactgaacttgaaattactcggg-----cggacaaattcacaggttttacacaag 57
            ||||||||| ||||||||||||||||||     ||| | |||||||| |||||||| |||
Sbjct: 1101 aactcaactcaacttgaaattactcgggcgggacgggcgaattcaca-gttttacagaag 1043

                            
Query: 58   caaattgacagggtcg 73
            ||||||||||| ||||
Sbjct: 1042 caaattgacagtgtcg 1027



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 148 aagcaaacttaaacgactcatg 169
           ||||||||||||||||||||||
Sbjct: 977 aagcaaacttaaacgactcatg 956



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>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0026D16, complete sequence
          Length = 129166

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 211   ggccgggcggggggcaggcggcggt 235
             |||||||||| ||||||||||||||
Sbjct: 28400 ggccgggcggtgggcaggcggcggt 28376



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>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0039K08, complete sequence
          Length = 122163

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 211    ggccgggcggggggcaggcggcggt 235
              |||||||||| ||||||||||||||
Sbjct: 112910 ggccgggcggtgggcaggcggcggt 112886



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 211      ggccgggcggggggcaggcggcggt 235
                |||||||||| ||||||||||||||
Sbjct: 25800567 ggccgggcggtgggcaggcggcggt 25800543



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 211      ggccgggcggggggcaggcggcggt 235
                |||||||||| ||||||||||||||
Sbjct: 19506135 ggccgggcggtgggcaggcggcggt 19506159



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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0580A11
          Length = 174673

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 211   ggccgggcggggggcaggcggcggt 235
             |||||||||| ||||||||||||||
Sbjct: 49479 ggccgggcggtgggcaggcggcggt 49503



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 211      ggccgggcggggggcaggcggcggt 235
                |||||||||| ||||||||||||||
Sbjct: 26119237 ggccgggcggtgggcaggcggcggt 26119213



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>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9, complete
              sequence
          Length = 153947

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    attcattcattcaaagcaaa 154
              ||||||||||||||||||||
Sbjct: 143356 attcattcattcaaagcaaa 143337



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>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence
          Length = 148259

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   cacacggacggacggccgggcggg 221
             ||||||||||||||| ||||||||
Sbjct: 37516 cacacggacggacggacgggcggg 37493



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>gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, complete sequence
          Length = 154859

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   gatggattcattcattcaaa 149
             ||||||||||||||||||||
Sbjct: 68036 gatggattcattcattcaaa 68017



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>emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chromosome 1p32.1-33
             Contains 3' end of the DAB1 gene for disabled homolog 1
             (Drosophila), a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 60856

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   gatggattcattcattcaaa 149
             ||||||||||||||||||||
Sbjct: 53885 gatggattcattcattcaaa 53904



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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    ggccgggcggggggcaggcg 230
              ||||||||||||||||||||
Sbjct: 254320 ggccgggcggggggcaggcg 254339



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>emb|AL390091.1|NCB12F1 Neurospora crassa DNA linkage group II BAC clone B12F1
          Length = 68478

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   cacacggacggacggccgggcggg 221
             ||||||||||||||| ||||||||
Sbjct: 42887 cacacggacggacggacgggcggg 42910



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>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17,
             complete sequence
          Length = 141987

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   gggatggattcattcattca 147
             ||||||||||||||||||||
Sbjct: 10001 gggatggattcattcattca 10020



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>gb|AC023310.4| Homo sapiens chromosome 15, clone RP11-336L20, complete sequence
          Length = 177355

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aatgggatggattcattcattcaa 148
             |||||||| |||||||||||||||
Sbjct: 47407 aatgggattgattcattcattcaa 47384



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>gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, complete sequence
          Length = 171987

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aatgggatggattcattcattcaa 148
             |||||||| |||||||||||||||
Sbjct: 31404 aatgggattgattcattcattcaa 31381



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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aactgaacttgaaattactc 27
             ||||||||||||||||||||
Sbjct: 98129 aactgaacttgaaattactc 98148



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>gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, complete sequence
          Length = 180708

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    aatgggatggattcattcattcaa 148
              |||||||| |||||||||||||||
Sbjct: 146597 aatgggattgattcattcattcaa 146620



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>gb|AC134393.6| Homo sapiens chromosome 15, clone CTC-803A3, complete sequence
          Length = 132353

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aatgggatggattcattcattcaa 148
             |||||||| |||||||||||||||
Sbjct: 74998 aatgggattgattcattcattcaa 74975



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>gb|AC131280.9| Homo sapiens chromosome 15, clone RP11-467L19, complete sequence
          Length = 194754

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    aatgggatggattcattcattcaa 148
              |||||||| |||||||||||||||
Sbjct: 116188 aatgggattgattcattcattcaa 116211



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>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence
          Length = 215303

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aactcaactgaacttgaaat 22
              ||||||||||||||||||||
Sbjct: 198046 aactcaactgaacttgaaat 198065



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>emb|AL772162.4| Mouse DNA sequence from clone RP23-175J8 on chromosome 2, complete
             sequence
          Length = 100090

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   attcattcattcaaagcaaa 154
             ||||||||||||||||||||
Sbjct: 53765 attcattcattcaaagcaaa 53784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,196,070
Number of Sequences: 3902068
Number of extensions: 2196070
Number of successful extensions: 58677
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58620
Number of HSP's gapped (non-prelim): 57
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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