Clone Name | rbaet95c06 |
---|---|
Clone Library Name | barley_pub |
>emb|X80266.1|HVGTIPP H.vulgare mRNA for gamma-TIP-like protein Length = 1020 Score = 379 bits (191), Expect = e-102 Identities = 197/199 (98%) Strand = Plus / Minus Query: 37 aattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcacc 96 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 aattcacaggttttacacaagcaaattgacagggtcgatcgtcacaggtttcacagcacc 960 Query: 97 acaaactgatggaccgatcgaccctgggaatgggatggattcattcattcaaagcaaact 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 959 acaaactgatggaccgatcgaccctgggaatgggatggattcattcattcaaagcaaact 900 Query: 157 taaacgactcatgactggaagcaaggggagacccgatcgaccacacggacggacggccgg 216 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 899 taaacgactcatgactggaagcaaggggagacgcgatcgaccacacggacggacgggcgg 840 Query: 217 gcggggggcaggcggcggt 235 ||||||||||||||||||| Sbjct: 839 gcggggggcaggcggcggt 821
>gb|U86762.1|TAU86762 Triticum aestivum gamma-type tonoplast intrinsic protein mRNA, complete cds Length = 1133 Score = 56.0 bits (28), Expect = 5e-05 Identities = 65/76 (85%), Gaps = 6/76 (7%) Strand = Plus / Minus Query: 3 aactcaactgaacttgaaattactcggg-----cggacaaattcacaggttttacacaag 57 ||||||||| |||||||||||||||||| ||| | |||||||| |||||||| ||| Sbjct: 1101 aactcaactcaacttgaaattactcgggcgggacgggcgaattcaca-gttttacagaag 1043 Query: 58 caaattgacagggtcg 73 ||||||||||| |||| Sbjct: 1042 caaattgacagtgtcg 1027 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 aagcaaacttaaacgactcatg 169 |||||||||||||||||||||| Sbjct: 977 aagcaaacttaaacgactcatg 956
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 28400 ggccgggcggtgggcaggcggcggt 28376
>gb|AC125783.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0039K08, complete sequence Length = 122163 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 112910 ggccgggcggtgggcaggcggcggt 112886
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 25800567 ggccgggcggtgggcaggcggcggt 25800543
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 19506135 ggccgggcggtgggcaggcggcggt 19506159
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 49479 ggccgggcggtgggcaggcggcggt 49503
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 ggccgggcggggggcaggcggcggt 235 |||||||||| |||||||||||||| Sbjct: 26119237 ggccgggcggtgggcaggcggcggt 26119213
>emb|CR847515.10| Zebrafish DNA sequence from clone DKEYP-60A7 in linkage group 9, complete sequence Length = 153947 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 attcattcattcaaagcaaa 154 |||||||||||||||||||| Sbjct: 143356 attcattcattcaaagcaaa 143337
>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence Length = 148259 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 cacacggacggacggccgggcggg 221 ||||||||||||||| |||||||| Sbjct: 37516 cacacggacggacggacgggcggg 37493
>gb|AC012596.4| Homo sapiens BAC clone CTD-2523K17 from 7, complete sequence Length = 154859 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gatggattcattcattcaaa 149 |||||||||||||||||||| Sbjct: 68036 gatggattcattcattcaaa 68017
>emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chromosome 1p32.1-33 Contains 3' end of the DAB1 gene for disabled homolog 1 (Drosophila), a novel gene and the 5' end of a novel gene, complete sequence Length = 60856 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 gatggattcattcattcaaa 149 |||||||||||||||||||| Sbjct: 53885 gatggattcattcattcaaa 53904
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ggccgggcggggggcaggcg 230 |||||||||||||||||||| Sbjct: 254320 ggccgggcggggggcaggcg 254339
>emb|AL390091.1|NCB12F1 Neurospora crassa DNA linkage group II BAC clone B12F1 Length = 68478 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 cacacggacggacggccgggcggg 221 ||||||||||||||| |||||||| Sbjct: 42887 cacacggacggacggacgggcggg 42910
>emb|BX897736.7| Zebrafish DNA sequence from clone CH211-181B15 in linkage group 17, complete sequence Length = 141987 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gggatggattcattcattca 147 |||||||||||||||||||| Sbjct: 10001 gggatggattcattcattca 10020
>gb|AC023310.4| Homo sapiens chromosome 15, clone RP11-336L20, complete sequence Length = 177355 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 aatgggatggattcattcattcaa 148 |||||||| ||||||||||||||| Sbjct: 47407 aatgggattgattcattcattcaa 47384
>gb|AC100757.2| Homo sapiens chromosome 15, clone RP11-566K19, complete sequence Length = 171987 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 aatgggatggattcattcattcaa 148 |||||||| ||||||||||||||| Sbjct: 31404 aatgggattgattcattcattcaa 31381
>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome Length = 164921 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aactgaacttgaaattactc 27 |||||||||||||||||||| Sbjct: 98129 aactgaacttgaaattactc 98148
>gb|AC136687.6| Homo sapiens chromosome 15, clone RP11-439M15, complete sequence Length = 180708 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 aatgggatggattcattcattcaa 148 |||||||| ||||||||||||||| Sbjct: 146597 aatgggattgattcattcattcaa 146620
>gb|AC134393.6| Homo sapiens chromosome 15, clone CTC-803A3, complete sequence Length = 132353 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 aatgggatggattcattcattcaa 148 |||||||| ||||||||||||||| Sbjct: 74998 aatgggattgattcattcattcaa 74975
>gb|AC131280.9| Homo sapiens chromosome 15, clone RP11-467L19, complete sequence Length = 194754 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 aatgggatggattcattcattcaa 148 |||||||| ||||||||||||||| Sbjct: 116188 aatgggattgattcattcattcaa 116211
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aactcaactgaacttgaaat 22 |||||||||||||||||||| Sbjct: 198046 aactcaactgaacttgaaat 198065
>emb|AL772162.4| Mouse DNA sequence from clone RP23-175J8 on chromosome 2, complete sequence Length = 100090 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 attcattcattcaaagcaaa 154 |||||||||||||||||||| Sbjct: 53765 attcattcattcaaagcaaa 53784 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,196,070 Number of Sequences: 3902068 Number of extensions: 2196070 Number of successful extensions: 58677 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58620 Number of HSP's gapped (non-prelim): 57 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)