ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome... 200 3e-48
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 200 3e-48
4dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 7e-46
5gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
6ref|XM_778266.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.6
7emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 42 1.6
8gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, comp... 42 1.6
9gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence 42 1.6
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
13dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
16gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 42 1.6
17ref|XM_512986.1| PREDICTED: Pan troglodytes LOC456389 (LOC456389... 40 6.2
18ref|XM_512277.1| PREDICTED: Pan troglodytes similar to Elongatio... 40 6.2
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.2
20gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL... 40 6.2
21ref|NM_001961.3| Homo sapiens eukaryotic translation elongation ... 40 6.2
22gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.2
23gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
24gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, com... 40 6.2
25gb|BC006547.2| Homo sapiens eukaryotic translation elongation fa... 40 6.2
26emb|Z11692.1|HSEF2MR H.sapiens mRNA for elongation factor 2 40 6.2
27emb|X51466.1|HSEF2 Human mRNA for elongation factor 2 40 6.2
28emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.2
29gb|AC011488.7| Homo sapiens chromosome 19 clone CTB-171N13, comp... 40 6.2
30emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 40 6.2
31emb|CR598660.1| full-length cDNA clone CS0DK003YK05 of HeLa cell... 40 6.2
32emb|CR596005.1| full-length cDNA clone CS0DC029YB08 of Neuroblas... 40 6.2
33gb|AC105110.5| Homo sapiens chromosome 18, clone CTD-2301P8, com... 40 6.2
34gb|AC108452.3| Homo sapiens chromosome 18, clone RP11-60G10, com... 40 6.2
35gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.2
36gb|AE004898.1| Pseudomonas aeruginosa PAO1, section 459 of 529 o... 40 6.2
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
38dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.2
39gb|AY942181.1| Homo sapiens elongation factor 2 mRNA, complete cds 40 6.2
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.2
41gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.2
42gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.2
43gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.2
44gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.2
45gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, compl... 40 6.2
46gb|L48522.1|HUMTSC2G06 Homo sapiens tuberin (TSC2) gene, exons 6... 40 6.2
47emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chrom... 40 6.2
48gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, com... 40 6.2
49dbj|D17315.1|DRODAGK Drosophila melanogaster rdgA mRNA for diacy... 40 6.2 
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10,
              complete sequence
          Length = 170681

 Score =  200 bits (101), Expect = 3e-48
 Identities = 253/301 (84%), Gaps = 2/301 (0%)
 Strand = Plus / Minus

                                                                          
Query: 148    gtgagctatgaactcggcaaggtccggccagctcgccgccgtcacgagcttcccgtcggc 207
              |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162197 gtgagcgatgaactcggcgaggtcaggccagctcgccgccgtcacgagcttcccgtcggc 162138

                                                                          
Query: 208    gaccgttccttcggcctccacgcccaccgcgccggcgaggttggagatcaccctcatggg 267
              |||||  ||  ||  |   |||| | ||||||||||||||  || || ||||||| | | 
Sbjct: 162137 gaccgcgccaccgtgccggacgctcgccgcgccggcgaggccggcgaccaccctcgtcgc 162078

                                                                          
Query: 268    caccccgctcgcgcacctcttgcccttgaggagccccgccgcggcgaggacgaggtgccc 327
               || ||||||||||| ||| |||| | |||||||||| |||||||||||| |||||| ||
Sbjct: 162077 gacgccgctcgcgcagctcctgccgtcgaggagccccaccgcggcgaggaggaggtggcc 162018

                                                                          
Query: 328    ctggtcgatgctggcgaccaccttccccttggcggcgaacttcgc-caccagcgccaccg 386
              ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||||| |
Sbjct: 162017 ctggtcgatgctggcgaccaccttccccttcccggcgaac-tcgcgcaccagcgccacgg 161959

                                                                          
Query: 387    cctcctgtttggtcaccagcagctccggcgagcggccgccgggcacgaccacgcactcgt 446
              ||||       ||| |||| |||||||||| ||||||||| |||||||| |||||| |||
Sbjct: 161958 cctcgccgcgcgtcgccagaagctccggcgcgcggccgcccggcacgacgacgcacgcgt 161899

               
Query: 447    a 447
              |
Sbjct: 161898 a 161898
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  200 bits (101), Expect = 3e-48
 Identities = 253/301 (84%), Gaps = 2/301 (0%)
 Strand = Plus / Minus

                                                                            
Query: 148      gtgagctatgaactcggcaaggtccggccagctcgccgccgtcacgagcttcccgtcggc 207
                |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 21638678 gtgagcgatgaactcggcgaggtcaggccagctcgccgccgtcacgagcttcccgtcggc 21638619

                                                                            
Query: 208      gaccgttccttcggcctccacgcccaccgcgccggcgaggttggagatcaccctcatggg 267
                |||||  ||  ||  |   |||| | ||||||||||||||  || || ||||||| | | 
Sbjct: 21638618 gaccgcgccaccgtgccggacgctcgccgcgccggcgaggccggcgaccaccctcgtcgc 21638559

                                                                            
Query: 268      caccccgctcgcgcacctcttgcccttgaggagccccgccgcggcgaggacgaggtgccc 327
                 || ||||||||||| ||| |||| | |||||||||| |||||||||||| |||||| ||
Sbjct: 21638558 gacgccgctcgcgcagctcctgccgtcgaggagccccaccgcggcgaggaggaggtggcc 21638499

                                                                            
Query: 328      ctggtcgatgctggcgaccaccttccccttggcggcgaacttcgc-caccagcgccaccg 386
                ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||||| |
Sbjct: 21638498 ctggtcgatgctggcgaccaccttccccttcccggcgaac-tcgcgcaccagcgccacgg 21638440

                                                                            
Query: 387      cctcctgtttggtcaccagcagctccggcgagcggccgccgggcacgaccacgcactcgt 446
                ||||       ||| |||| |||||||||| ||||||||| |||||||| |||||| |||
Sbjct: 21638439 cctcgccgcgcgtcgccagaagctccggcgcgcggccgcccggcacgacgacgcacgcgt 21638380

                 
Query: 447      a 447
                |
Sbjct: 21638379 a 21638379



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 372      ccaccagcgccaccgcctcc 391
                ||||||||||||||||||||
Sbjct: 22931663 ccaccagcgccaccgcctcc 22931682
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  200 bits (101), Expect = 3e-48
 Identities = 253/301 (84%), Gaps = 2/301 (0%)
 Strand = Plus / Minus

                                                                            
Query: 148      gtgagctatgaactcggcaaggtccggccagctcgccgccgtcacgagcttcccgtcggc 207
                |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 21948877 gtgagcgatgaactcggcgaggtcaggccagctcgccgccgtcacgagcttcccgtcggc 21948818

                                                                            
Query: 208      gaccgttccttcggcctccacgcccaccgcgccggcgaggttggagatcaccctcatggg 267
                |||||  ||  ||  |   |||| | ||||||||||||||  || || ||||||| | | 
Sbjct: 21948817 gaccgcgccaccgtgccggacgctcgccgcgccggcgaggccggcgaccaccctcgtcgc 21948758

                                                                            
Query: 268      caccccgctcgcgcacctcttgcccttgaggagccccgccgcggcgaggacgaggtgccc 327
                 || ||||||||||| ||| |||| | |||||||||| |||||||||||| |||||| ||
Sbjct: 21948757 gacgccgctcgcgcagctcctgccgtcgaggagccccaccgcggcgaggaggaggtggcc 21948698

                                                                            
Query: 328      ctggtcgatgctggcgaccaccttccccttggcggcgaacttcgc-caccagcgccaccg 386
                ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||||| |
Sbjct: 21948697 ctggtcgatgctggcgaccaccttccccttcccggcgaac-tcgcgcaccagcgccacgg 21948639

                                                                            
Query: 387      cctcctgtttggtcaccagcagctccggcgagcggccgccgggcacgaccacgcactcgt 446
                ||||       ||| |||| |||||||||| ||||||||| |||||||| |||||| |||
Sbjct: 21948638 cctcgccgcgcgtcgccagaagctccggcgcgcggccgcccggcacgacgacgcacgcgt 21948579

                 
Query: 447      a 447
                |
Sbjct: 21948578 a 21948578



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 372      ccaccagcgccaccgcctcc 391
                ||||||||||||||||||||
Sbjct: 23241573 ccaccagcgccaccgcctcc 23241592
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>dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C10, full
            insert sequence
          Length = 1357

 Score =  192 bits (97), Expect = 7e-46
 Identities = 252/301 (83%), Gaps = 2/301 (0%)
 Strand = Plus / Minus

                                                                        
Query: 148  gtgagctatgaactcggcaaggtccggccagctcgccgccgtcacgagcttcccgtcggc 207
            |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1223 gtgagcgatgaactcggcgaggtcaggccagctcgccgccgtcacgagcttcccgtcggc 1164

                                                                        
Query: 208  gaccgttccttcggcctccacgcccaccgcgccggcgaggttggagatcaccctcatggg 267
            |||||  ||  ||  |   |||| | ||||||||||||||  || || ||||||| | | 
Sbjct: 1163 gaccgcgccaccgtgccggacgctcgccgcgccggcgaggccggcgaccaccctcgtcgc 1104

                                                                        
Query: 268  caccccgctcgcgcacctcttgcccttgaggagccccgccgcggcgaggacgaggtgccc 327
             || ||||||||||| ||| |||| | |||||||||| |||||||||||| |||||| ||
Sbjct: 1103 gacgccgctcgcgcagctcctgccgtcgaggagccccaccgcggcgaggaggaggtggcc 1044

                                                                        
Query: 328  ctggtcgatgctggcgaccaccttccccttggcggcgaacttcgc-caccagcgccaccg 386
            ||||||||||||||||||||||||| ||||  |||||||| |||| |||||||||||| |
Sbjct: 1043 ctggtcgatgctggcgaccaccttctccttcccggcgaac-tcgcgcaccagcgccacgg 985

                                                                        
Query: 387  cctcctgtttggtcaccagcagctccggcgagcggccgccgggcacgaccacgcactcgt 446
            ||||       ||| |||| |||||||||| ||||||||| |||||||| |||||| |||
Sbjct: 984  cctcgccgcgcgtcgccagaagctccggcgcgcggccgcccggcacgacgacgcacgcgt 925

             
Query: 447  a 447
            |
Sbjct: 924  a 924
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   ccgccgcggcgaggacgaggt 323
             |||||||||||||||||||||
Sbjct: 97235 ccgccgcggcgaggacgaggt 97215
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>ref|XM_778266.1| PREDICTED: Strongylocentrotus purpuratus similar to huntingtin
            interacting protein B isoform 2 (LOC578079), mRNA
          Length = 9433

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 96   cattgcatcttcagattcaga 116
            |||||||||||||||||||||
Sbjct: 3416 cattgcatcttcagattcaga 3396
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    acgcccaccgcgccggcgagg 247
              |||||||||||||||||||||
Sbjct: 204222 acgcccaccgcgccggcgagg 204202
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>gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, complete sequence
          Length = 176873

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 37    ctctgcagagtgtgacagtgctcag 61
             |||||||||||||||||||| ||||
Sbjct: 55231 ctctgcagagtgtgacagtggtcag 55255
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>gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence
          Length = 160541

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 37  ctctgcagagtgtgacagtgctcag 61
           |||||||||||||||||||| ||||
Sbjct: 584 ctctgcagagtgtgacagtggtcag 560
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 303      ccgccgcggcgaggacgaggt 323
                |||||||||||||||||||||
Sbjct: 19614160 ccgccgcggcgaggacgaggt 19614140
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 407      agctccggcgagcggccgccg 427
                |||||||||||||||||||||
Sbjct: 28563268 agctccggcgagcggccgccg 28563248
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>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1053A04
          Length = 144321

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   agctccggcgagcggccgccg 427
             |||||||||||||||||||||
Sbjct: 27281 agctccggcgagcggccgccg 27261
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>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017H11
          Length = 158374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 407    agctccggcgagcggccgccg 427
              |||||||||||||||||||||
Sbjct: 132109 agctccggcgagcggccgccg 132089
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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   ccgccgcggcgaggacgaggt 323
             |||||||||||||||||||||
Sbjct: 23642 ccgccgcggcgaggacgaggt 23622
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>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 303  ccgccgcggcgaggacgaggt 323
            |||||||||||||||||||||
Sbjct: 1424 ccgccgcggcgaggacgaggt 1444
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 167    aggtccggccagctcgccgccgtca 191
              ||||||||||||| |||||||||||
Sbjct: 126919 aggtccggccagcccgccgccgtca 126943



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   gcccctggtcgatgctggcg 343
             ||||||||||||||||||||
Sbjct: 18900 gcccctggtcgatgctggcg 18919
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>ref|XM_512986.1| PREDICTED: Pan troglodytes LOC456389 (LOC456389), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 30  ccccttggcggcgaacttggccac 7
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>ref|XM_512277.1| PREDICTED: Pan troglodytes similar to Elongation factor 2 (EF-2)
           (LOC455593), mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 411 ccccttggcggcgaacttggccac 388
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 304     cgccgcggcgaggacgaggtgcccctggtcga 335
               ||||||||||||| || ||||| |||||||||
Sbjct: 2186694 cgccgcggcgagggcgtggtgctcctggtcga 2186663
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>gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL), complete sequence
          Length = 79586

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   caaggtccggccagctcgcc 184
             ||||||||||||||||||||
Sbjct: 33679 caaggtccggccagctcgcc 33660
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>ref|NM_001961.3| Homo sapiens eukaryotic translation elongation factor 2 (EEF2),
           mRNA
          Length = 3163

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 803 ccccttggcggcgaacttggccac 780
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    cggcaaggtccggccagctc 181
              ||||||||||||||||||||
Sbjct: 841598 cggcaaggtccggccagctc 841617
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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ccaccagcgccaccgcctcc 391
             ||||||||||||||||||||
Sbjct: 84170 ccaccagcgccaccgcctcc 84189
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>gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, complete sequence
          Length = 72483

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   caaggtccggccagctcgcc 184
             ||||||||||||||||||||
Sbjct: 34096 caaggtccggccagctcgcc 34115
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>gb|BC006547.2| Homo sapiens eukaryotic translation elongation factor 2, mRNA (cDNA
           clone IMAGE:2963048), partial cds
          Length = 1818

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 788 ccccttggcggcgaacttggccac 765
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>emb|Z11692.1|HSEF2MR H.sapiens mRNA for elongation factor 2
          Length = 3080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 720 ccccttggcggcgaacttggccac 697
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>emb|X51466.1|HSEF2 Human mRNA for elongation factor 2
          Length = 3075

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 720 ccccttggcggcgaacttggccac 697
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 239    ccggcgaggttggagatcaccctc 262
              |||||| |||||||||||||||||
Sbjct: 326992 ccggcgcggttggagatcaccctc 326969
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>gb|AC011488.7| Homo sapiens chromosome 19 clone CTB-171N13, complete sequence
          Length = 134308

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 352    ccccttggcggcgaacttcgccac 375
              |||||||||||||||||| |||||
Sbjct: 131888 ccccttggcggcgaacttggccac 131911
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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   tcgccaccagcgccaccgcc 388
             ||||||||||||||||||||
Sbjct: 69402 tcgccaccagcgccaccgcc 69421
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>emb|CR598660.1| full-length cDNA clone CS0DK003YK05 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1002

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 789 ccccttggcggcgaacttggccac 766
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>emb|CR596005.1| full-length cDNA clone CS0DC029YB08 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1142

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 711 ccccttggcggcgaacttggccac 688
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>gb|AC105110.5| Homo sapiens chromosome 18, clone CTD-2301P8, complete sequence
          Length = 95735

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ggaggagaagatgcattgca 102
             ||||||||||||||||||||
Sbjct: 36832 ggaggagaagatgcattgca 36851
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>gb|AC108452.3| Homo sapiens chromosome 18, clone RP11-60G10, complete sequence
          Length = 160769

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ggaggagaagatgcattgca 102
             ||||||||||||||||||||
Sbjct: 14599 ggaggagaagatgcattgca 14618
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     tggcggcgaacttcgccacc 376
               ||||||||||||||||||||
Sbjct: 4615167 tggcggcgaacttcgccacc 4615148
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>gb|AE004898.1| Pseudomonas aeruginosa PAO1, section 459 of 529 of the complete
            genome
          Length = 10927

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  gtccggccagctcgccgccg 188
            ||||||||||||||||||||
Sbjct: 7533 gtccggccagctcgccgccg 7514
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     ccaccagcgccaccgcctcc 391
               ||||||||||||||||||||
Sbjct: 1132673 ccaccagcgccaccgcctcc 1132654
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 228     cgcccaccgcgccggcgaggttgg 251
               |||||||||||| |||||||||||
Sbjct: 1879576 cgcccaccgcgcgggcgaggttgg 1879599
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>gb|AY942181.1| Homo sapiens elongation factor 2 mRNA, complete cds
          Length = 2582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 ccccttggcggcgaacttcgccac 375
           |||||||||||||||||| |||||
Sbjct: 720 ccccttggcggcgaacttggccac 697
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    gcggccgccgggcacgacca 437
              ||||||||||||||||||||
Sbjct: 443924 gcggccgccgggcacgacca 443943
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     ccaccagcgccaccgcctcc 391
               ||||||||||||||||||||
Sbjct: 2428365 ccaccagcgccaccgcctcc 2428346
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 370     cgccaccagcgccaccgcctcctg 393
               |||||||||| |||||||||||||
Sbjct: 1844868 cgccaccagcaccaccgcctcctg 1844891
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     ccccgccgcggcgaggacga 320
               ||||||||||||||||||||
Sbjct: 1158445 ccccgccgcggcgaggacga 1158464
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ccaccagcgccaccgcctcc 391
               ||||||||||||||||||||
Sbjct: 3921937 ccaccagcgccaccgcctcc 3921956
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>gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, complete sequence
          Length = 178358

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    ctcctgtttggtcaccagca 407
              ||||||||||||||||||||
Sbjct: 112141 ctcctgtttggtcaccagca 112122
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>gb|L48522.1|HUMTSC2G06 Homo sapiens tuberin (TSC2) gene, exons 6, 7, and 8
          Length = 1267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  caaggtccggccagctcgcc 184
            ||||||||||||||||||||
Sbjct: 1013 caaggtccggccagctcgcc 994
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>emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chromosome 4, complete
              sequence
          Length = 264321

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 27     aatatctgaactctgcagagtgtg 50
              ||||||||||| ||||||||||||
Sbjct: 133802 aatatctgaacactgcagagtgtg 133825
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>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence
          Length = 205642

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 352  ccccttggcggcgaacttcgccac 375
            |||||||||||||||||| |||||
Sbjct: 7354 ccccttggcggcgaacttggccac 7377
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>dbj|D17315.1|DRODAGK Drosophila melanogaster rdgA mRNA for diacylglycerol kinase, complete
            cds
          Length = 5081

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 370  cgccaccagcgccaccgcctcctg 393
            |||||||||||||||| |||||||
Sbjct: 2537 cgccaccagcgccaccacctcctg 2514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,500,561
Number of Sequences: 3902068
Number of extensions: 3500561
Number of successful extensions: 76892
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74912
Number of HSP's gapped (non-prelim): 1972
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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