>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 62  HKTVVASQHVQEPRSRPDSHTHKVNKQQSRAHQTH 166
           H  V+AS H Q+ + +  +  H+   QQ + HQ H
Sbjct: 313 HVNVIASNHFQQQQQQHQAQQHQQQHQQHQQHQQH 347

>MOT3_YEAST (P54785) Transcriptional activator/repressor MOT3 (Modulator of|
           transcription protein 3) (Hypoxic gene repressor protein
           7)
          Length = 490

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 77  ASQHVQEPRSRPDSHTHKVNKQQSRAH----QTHTRIQR-ANTDDVGTASL 214
           A  H+Q+ + +   H  + ++QQ   H    Q HT +Q  +NT+++G+ SL
Sbjct: 3   ADHHLQQQQQQRQQHQQQQHQQQQHQHQHQQQQHTILQNVSNTNNIGSDSL 53

>RL4_METAC (Q8TRU6) 50S ribosomal protein L4P|
          Length = 253

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 109 ARQPHAQGKQTAITCTPNAYKNTKSKYRRRRHGVPTACAVTS 234
           AR PHA+G + A    P A ++ K   + RR+ + +A A T+
Sbjct: 81  ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATT 122

>RL4_METMA (Q8PV49) 50S ribosomal protein L4P|
          Length = 253

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 109 ARQPHAQGKQTAITCTPNAYKNTKSKYRRRRHGVPTACAVT 231
           AR PHA+G + A    P A ++ K   + RR+ + +A A T
Sbjct: 81  ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAAT 121

>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)|
          Length = 1093

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 399  GPAECASFLSQPKTCPSASARVACPAADAQSNTAAPG 289
            GP  C    SQ + CP +   V  PA+  +  T+  G
Sbjct: 937  GPGACVGNSSQSRPCPYSEIPVILPASSVEETTSCGG 973

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
 Frame = -3

Query: 429 NCIPGFANQRGPAECASFLSQPKTCPSASARVACPAADAQSNTAAPGARVAKDYSSYVVY 250
           N +PG   Q+G    A     P+         A P   A +  A P    A  YSSY+ Y
Sbjct: 738 NSVPG---QQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPY 794

Query: 249 APLHE*GDSACSRDAV--PTSSVFA 181
            P    G  A  +     P+  VFA
Sbjct: 795 NPQQFPGQPAMMQPMAHYPSQPVFA 819

>CCD13_HUMAN (Q8IYE1) Coiled-coil domain-containing protein 13|
          Length = 715

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 17  N*TLKKIQSKLNYYYHKTVVASQHVQEPRSRPDSHTHKVNKQQSRAHQTHTRIQRANTDD 196
           N  L + + KL    H+TVV  QH+++ R  P     K +  Q  A +T T +  +N   
Sbjct: 578 NSKLLESERKLQEERHRTVVLEQHLEKIRLEPG----KASASQRAAPRTKTGLPTSNNRH 633

Query: 197 VGTAS 211
             T S
Sbjct: 634 NPTGS 638


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,100,132
Number of Sequences: 219361
Number of extensions: 913021
Number of successful extensions: 3114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3111
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)