ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FIXI_BRAJA (Q59207) Nitrogen fixation protein fixI (E1-E2 type c... 33 0.25
2FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fi... 32 0.71
3IF2_DESDG (Q30WJ0) Translation initiation factor IF-2 31 1.2
4ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50 31 1.2
5GCKR_RAT (Q07071) Glucokinase regulatory protein (Glucokinase re... 29 6.0

>FIXI_BRAJA (Q59207) Nitrogen fixation protein fixI (E1-E2 type cation ATPase|
           fixI) (EC 3.6.3.-)
          Length = 730

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +1

Query: 238 APAPVSDQQRAAPVSGAHAPWPVDDLILLGRHLDHPIPAPVSAAILVAPFAAVLPRPDLH 417
           AP+  +     +P+S AH      DL+ LGR L     APV+AAI  A  A  L R +L 
Sbjct: 627 APSLAAAHVSMSPISAAHLSQATADLVFLGRPL-----APVAAAIDSARKALHLMRQNLW 681

Query: 418 LGV 426
           L +
Sbjct: 682 LAI 684



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>FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 782

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 411 IWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPRC 292
           +WT   G      + GGD R  R+VE  P Q +  D P C
Sbjct: 17  VWTADTGTTSEFIEAGGDIRGPRIVERQPSQCKETDWPFC 56



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>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 417 VEIWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPR 295
           VE   +  GGK   ED GG+W R +  +  PE   +  +P+
Sbjct: 356 VEFGDKGAGGKKMREDVGGNWNRGKKGKRKPETKPVSTQPQ 396



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>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50|
          Length = 1375

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 148 DGHGGLVVAEAM---EVVRHLL-HGATFQMQDVHAPAPVSDQQRAAPVSGAHAPWPVDDL 315
           +G   L+ A  M   E+V HLL HGA    +DV     +S      P S  HA   V  L
Sbjct: 622 EGRTALIAAAYMGHREIVEHLLDHGAEVNHEDVDGRTALSVAALCVPASKGHAS-VVSLL 680

Query: 316 ILLGRHLDH 342
           I  G  +DH
Sbjct: 681 IDRGAEVDH 689



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>GCKR_RAT (Q07071) Glucokinase regulatory protein (Glucokinase regulator)|
          Length = 626

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 223 MQDVHAPAPVSDQQRAAPVS 282
           +Q +H P P+SD  RAAP+S
Sbjct: 538 LQAIHFPQPLSDDVRAAPIS 557


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,836,222
Number of Sequences: 219361
Number of extensions: 1134731
Number of successful extensions: 3694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3686
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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