>REMO_SOLTU (P93788) Remorin (pp34)|
          Length = 198

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 41/91 (45%)
 Frame = -3

Query: 472 KINNRFKREEVVINGWETEQVDKASAWLKKIERKLDEQRAKAVEKTQNDVXXXXXXXXXX 293
           K  N+ +++   I  WE  +     A LKK+E +L++++A+  EK +N +          
Sbjct: 103 KAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEK 162

Query: 292 XXXXXXXRGLKLAKVLELANFMKAVGRVPTK 200
                  RG  L K  ELA   +A G  P K
Sbjct: 163 RAMIEAKRGEDLLKAEELAAKYRATGTAPKK 193

>YG4U_YEAST (P53308) Hypothetical 11.9 kDa protein in DIE2-SMI1 intergenic|
           region
          Length = 114

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
 Frame = +3

Query: 240 SSSTLASFSPRLASADARFSSALCRALATSF-----------CVFSTALARCSSSFLSI- 383
           +SSTLAS S  ++ +   F S++C   ++SF           C FS+     SSSFLS+ 
Sbjct: 17  ASSTLAS-SLLISFSSFLFISSVCLFTSSSFFADSVTCSFSTCSFSSTFGCFSSSFLSLS 75

Query: 384 -FLSQADALSTCS 419
             +S   AL +CS
Sbjct: 76  CLMSTLSALISCS 88

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 222 AFMKLASSSTLASFSPRLASADARFSSALCRALATSFCVFS---TALARCSSSFLSIFLS 392
           A   L SSS+LAS S    ++ +  SS+L  + ATS  + S   T+ +  SSS  S  L+
Sbjct: 81  ASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLA 140

Query: 393 QADALSTCSVSQPLMTTSSRL 455
            +   S+   S    TTSS L
Sbjct: 141 SSSITSSSLASS--STTSSSL 159

>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)|
          Length = 376

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 213 GCPPSARSSSHQPHACPPSSALEWNPY 133
           GC PS+ S S  PH  PPS A + + Y
Sbjct: 321 GCGPSSSSQSTPPHLHPPSQATQPHHY 347

>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor|
          Length = 374

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 23/81 (28%), Positives = 44/81 (54%)
 Frame = +3

Query: 210 TLPTAFMKLASSSTLASFSPRLASADARFSSALCRALATSFCVFSTALARCSSSFLSIFL 389
           T P++    +SSS+ +S S   +S+ +  SS+   + ++S    S++ +  SSS + I  
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212

Query: 390 SQADALSTCSVSQPLMTTSSR 452
           S + + S+ S S    ++SSR
Sbjct: 213 STSSSHSSSSSSSSSSSSSSR 233

>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)|
          Length = 4377

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
 Frame = +3

Query: 228  MKLASSSTL-------ASFSPRLASADARFSSALCRALATSFCVFSTALA---------- 356
            +K ASSSTL       A+   +++SA    SS +  A  T   VFST  A          
Sbjct: 1723 LKYASSSTLINGCKATATLQEKISSATNSVSSVVSAATDTVEKVFSTTTAMPFSPLRSYV 1782

Query: 357  -RCSSSFLSIFLSQADALSTCSVSQPLMTTSS 449
                S+F S+    A AL T   S    TTSS
Sbjct: 1783 SAAPSAFQSLRTPSASALYTSLGSSISATTSS 1814

>RECA_HELPY (P42445) Protein recA (Recombinase A)|
          Length = 347

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 454 KREEVVINGWETEQVDKASAWLKKIERKLDEQRAKAVEKTQND 326
           K  E++  G + + VDK+ AWL   ++KL + R  A    + D
Sbjct: 272 KEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKED 314

>RECA_HELPJ (Q9ZMS7) Protein recA (Recombinase A)|
          Length = 347

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 454 KREEVVINGWETEQVDKASAWLKKIERKLDEQRAKAVEKTQND 326
           K  E++  G + + VDK+ AWL   ++KL + R  A    + D
Sbjct: 272 KEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKED 314

>MYF5_XENLA (P24700) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +3

Query: 210 TLPTAFMKLASSSTLASFSPRLASADARFSSALCRALATSFCVFSTALARCSSSFLSIFL 389
           T P + M   S       SP+ +  ++ F +  C  L TSF   ST L   S   LS  +
Sbjct: 154 TEPGSPMSSCSDGMSDCSSPQWSGRNSSFDNVYCSDLQTSFS--STKLTLSSLDCLSSIV 211

Query: 390 SQADALSTCSVSQPLMTTSS 449
            +  +   CS+  P   T S
Sbjct: 212 DRISSPQQCSLPIPDSITPS 231

>YHU3_YEAST (P38844) Protein YHR143W precursor|
          Length = 325

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +3

Query: 234 LASSSTLASFSPRLASADARFSSALCRALATSFCVFSTALARCSSSFLSIFLSQADALST 413
           + SS T ++ +   AS+  R +S+   A  +S   FS+ L+  SSS  S     + + ST
Sbjct: 134 IESSGTSSATAEPSASSGFRLTSS--SAFVSSTAPFSSQLSSSSSSETS-----SSSFST 186

Query: 414 CSVSQPLMTTSS 449
            S S PL  TSS
Sbjct: 187 SSSSAPLSLTSS 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,909,705
Number of Sequences: 219361
Number of extensions: 848746
Number of successful extensions: 3208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)