ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet95a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor ... 87 3e-17
2ABA2_CAPAN (Q96375) Zeaxanthin epoxidase, chloroplast precursor ... 76 4e-14
3ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor ... 75 9e-14
4ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor ... 74 2e-13
5PRPE_SALTY (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propio... 30 3.5
6Y1984_CAUCR (Q9A6U9) Hypothetical UPF0169 lipoprotein CC1984 pre... 29 5.9

>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90)
          Length = 663

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 40/62 (64%), Positives = 45/62 (72%)
 Frame = -3

Query: 487 HGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGGGEVLQ 308
           HGTW  DNEGRRYR  PNFP RFHPSD IEFGSDKKA FRVKV+   P  +A+   + + 
Sbjct: 602 HGTWITDNEGRRYRASPNFPTRFHPSDIIEFGSDKKAAFRVKVMKFPPKTAAKEERQAVG 661

Query: 307 AA 302
           AA
Sbjct: 662 AA 663



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>ABA2_CAPAN (Q96375) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90) (Xanthophyll epoxidase) (Beta-cyclohexenyl
           epoxidase)
          Length = 660

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = -3

Query: 487 HGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGGGEVLQ 308
           HGTWF DNEGRRYR+ PNFP+RFH SD I FGSD KA FR+K +   P  +A+   + + 
Sbjct: 600 HGTWFIDNEGRRYRVSPNFPMRFHSSDVIVFGSD-KAAFRIKAMKFAPKTAAKEDRQAVG 658

Query: 307 AA 302
           AA
Sbjct: 659 AA 660



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>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90)
          Length = 669

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 34/44 (77%), Positives = 35/44 (79%)
 Frame = -3

Query: 487 HGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVL 356
           HGTW  DNEGRRYR  PNFP RFHPSD IEFGSD KA FRVK +
Sbjct: 608 HGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSD-KAAFRVKAM 650



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>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC|
           1.14.13.90) (PA-ZE)
          Length = 661

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 38/62 (61%), Positives = 44/62 (70%)
 Frame = -3

Query: 487 HGTWFNDNEGRRYRLPPNFPVRFHPSDAIEFGSDKKAMFRVKVLSALPYDSARGGGEVLQ 308
           HGTW  D EG+RYR+PPNFP RF PSDAIE GS K A FRVKV+ + P    + G  +LQ
Sbjct: 603 HGTWIADIEGKRYRVPPNFPARFRPSDAIEIGSQKVA-FRVKVMKSSPGSVEKEG--ILQ 659

Query: 307 AA 302
           AA
Sbjct: 660 AA 661



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>PRPE_SALTY (P55912) Propionate--CoA ligase (EC 6.2.1.17) (Propionyl-CoA|
           synthetase)
          Length = 628

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 274 DKGWLKSPLMLPAELLPRLSPSRMGAR*APSPGTWPSCLNQTRWHPKGENEPGSLEVTG 450
           + GW   P+M  A  L    PSR+G+   P  G     LN+    P G NE G L + G
Sbjct: 390 ESGW---PIMALARALDD-RPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEG 444



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>Y1984_CAUCR (Q9A6U9) Hypothetical UPF0169 lipoprotein CC1984 precursor|
          Length = 305

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = +1

Query: 214 FLGGDAVSAVFLLKNATVAGDKGWLKSPLML----PAELLPRLSPSRMGAR*APSPGTWP 381
           F G  AV+   +L  A+VAG  G  K P ++    P ELL      R+        G W 
Sbjct: 5   FQGRPAVTIAAVLVAASVAGCAGKAKKPTLVYEERPVELLYSTGADRL------DRGNWN 58

Query: 382 SCLNQ----TRWHPKGENEPGSLEVTGSAY 459
             ++      R HP  E    S+ +TG A+
Sbjct: 59  EAVDYFREVERQHPYSEWSRRSILMTGYAH 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,317,238
Number of Sequences: 219361
Number of extensions: 1599965
Number of successful extensions: 3887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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