>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 391   ggcgcgccggggatcatctggtaagggaactgcgcggcg 429
             |||||| |||||| |||| || |||||||||||||||||
Sbjct: 20564 ggcgcggcggggaacatcgggcaagggaactgcgcggcg 20526

>gb|AC137616.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0069I13, complete sequence
          Length = 94252

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 391   ggcgcgccggggatcatctggtaagggaactgcgcggcg 429
             |||||| |||||| |||| || |||||||||||||||||
Sbjct: 57362 ggcgcggcggggaacatcgggcaagggaactgcgcggcg 57324

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 391     ggcgcgccggggatcatctggtaagggaactgcgcggcg 429
               |||||| |||||| |||| || |||||||||||||||||
Sbjct: 2188133 ggcgcggcggggaacatcgggcaagggaactgcgcggcg 2188095

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 303     gtcgttggtgacggggccggcggcc 327
               ||||| |||||||||||||||||||
Sbjct: 5244201 gtcgtaggtgacggggccggcggcc 5244225

>emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, complete sequence
          Length = 250701

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     gggaagatgccggagcagtcc 91
              |||||||||||||||||||||
Sbjct: 186028 gggaagatgccggagcagtcc 186008

>emb|AL353682.11| Human DNA sequence from clone RP11-203D19 on chromosome 9 Contains the
             3' end of the TLE1 gene for transducin-like enhancer of
             split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), complete
             sequence
          Length = 90331

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     gaagcagaagcgatcctgatc 21
             |||||||||||||||||||||
Sbjct: 59674 gaagcagaagcgatcctgatc 59654

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 267     gtcgcccggtgcctgctcggcctgc 291
               ||||||||| |||||||||||||||
Sbjct: 1823789 gtcgcccggggcctgctcggcctgc 1823813

>dbj|AB039965.1| Pseudomonas putida icd, mutS, fdxA genes for isocitrate
            dehydrogenase, mismatch repair system component MutS,
            ferrodoxin,  partial and complete cds
          Length = 3726

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 267  gtcgcccggtgcctgctcggcctgc 291
            ||||||||| |||||||||||||||
Sbjct: 1818 gtcgcccggggcctgctcggcctgc 1794

>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    tggcggagcaggcatcgcgt 376
              ||||||||||||||||||||
Sbjct: 912989 tggcggagcaggcatcgcgt 912970

>ref|XM_469649.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 10365

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 ccggtgcctgctcggcctgc 291
           ||||||||||||||||||||
Sbjct: 501 ccggtgcctgctcggcctgc 520

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      ccggtgcctgctcggcctgc 291
                ||||||||||||||||||||
Sbjct: 29975092 ccggtgcctgctcggcctgc 29975111

>emb|BX640403.5| Zebrafish DNA sequence from clone CH211-133D22 in linkage group 10,
            complete sequence
          Length = 163035

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   tgatcctctccagcagacac 44
            ||||||||||||||||||||
Sbjct: 9876 tgatcctctccagcagacac 9895

>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
             sequence
          Length = 159661

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ccggtgcctgctcggcctgc 291
             ||||||||||||||||||||
Sbjct: 35514 ccggtgcctgctcggcctgc 35495

>emb|AL356486.12| Human DNA sequence from clone RP11-721F14 on chromosome 13 Contains the
             GPR80 gene for G protein-coupled receptor 80, complete
             sequence
          Length = 67645

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    ccattttacagtttcacaaggagt 120
             ||||||||||||| ||||||||||
Sbjct: 63223 ccattttacagttccacaaggagt 63246

>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
              sequence
          Length = 155106

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ccggtgcctgctcggcctgc 291
              ||||||||||||||||||||
Sbjct: 132659 ccggtgcctgctcggcctgc 132640

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 100      ttttacagtttcacaaggagtttt 123
                ||||||||||||||| ||||||||
Sbjct: 15690813 ttttacagtttcacatggagtttt 15690836

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      ccggtgcctgctcggcctgc 291
                ||||||||||||||||||||
Sbjct: 30066514 ccggtgcctgctcggcctgc 30066533

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    cgcccgccgcctggtggaac 354
              ||||||||||||||||||||
Sbjct: 358010 cgcccgccgcctggtggaac 358029

>gb|AC026756.15|AC026756 Homo sapiens chromosome 13 clone RP11-286P8, complete sequence
          Length = 156555

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    ccattttacagtttcacaaggagt 120
             ||||||||||||| ||||||||||
Sbjct: 82021 ccattttacagttccacaaggagt 81998

>gb|AE004791.1| Pseudomonas aeruginosa PAO1, section 352 of 529 of the complete
            genome
          Length = 15476

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 364  gcaggcatcgcgtggccgccgaac 387
            |||| |||||||||||||||||||
Sbjct: 7452 gcagccatcgcgtggccgccgaac 7475

>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0404D10
          Length = 155069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 100  ttttacagtttcacaaggagtttt 123
            ||||||||||||||| ||||||||
Sbjct: 5269 ttttacagtttcacatggagtttt 5292

>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0410E11
          Length = 150200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 100    ttttacagtttcacaaggagtttt 123
              ||||||||||||||| ||||||||
Sbjct: 124968 ttttacagtttcacatggagtttt 124991

>gb|L40934.1|MUSRAB65A Mus musculus rab6/rab5-associated protein (rab6) mRNA, partial cds
          Length = 308

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 261 cggatggtcgcccggtgcctgctc 284
           ||||||||||||||| ||||||||
Sbjct: 120 cggatggtcgcccggcgcctgctc 97

>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete
              sequence
          Length = 249534

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    acaaggagttttacagcttc 131
              ||||||||||||||||||||
Sbjct: 219672 acaaggagttttacagcttc 219691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,899,156
Number of Sequences: 3902068
Number of extensions: 2899156
Number of successful extensions: 51216
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50901
Number of HSP's gapped (non-prelim): 315
length of query: 436
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 414
effective length of database: 17,147,199,772
effective search space: 7098940705608
effective search space used: 7098940705608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)