ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95a07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110193.1| Zea mays CL38374_1 mRNA sequence Length = 748 Score = 224 bits (113), Expect = 2e-55 Identities = 178/200 (89%) Strand = Plus / Plus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 ||||| ||||||||||||||||| || || ||||| ||||||||||| |||||||||| | Sbjct: 182 taatcaatggcaattatgaggaaaccaactgagatatacatgaggaagacaggatatagg 241 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct: 242 gccagagcttttctccttgggttaacagcagcgctcatgaatggatacgcagcccaggag 301 Query: 381 ctccacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttcagcaag 440 ||||| |||| ||||| |||||| |||| ||||| |||||||||||||||||||||| | Sbjct: 302 ctccaagccaatgtgattgtcaccacgacaatcttaagtatgacattgtccttcagcatg 361 Query: 441 canattagagctccaacatc 460 || | |||||| |||||||| Sbjct: 362 caaactagagcaccaacatc 381
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 218 bits (110), Expect = 1e-53 Identities = 175/197 (88%) Strand = Plus / Minus Query: 264 tctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatggcc 323 |||||||||||||||||||| || || || || ||||||||||| || ||||| | |||| Sbjct: 37572262 tctatggcaattatgaggaaaccaactgaaatatacatgaggaagacgggatacagggcc 37572203 Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 |||||||||||||||||||| || ||||| ||||||||||| || ||||||||||| ||| Sbjct: 37572202 agagcctttctccttgggttaactgcagcactcatgaatggatatgcagcccaggaactc 37572143 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttcagcaagcan 443 || |||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 37572142 catgccaatgtgacggtcactacgatgatctttagtatgacattgtccttcagcatgcaa 37572083 Query: 444 attagagctccaacatc 460 | ||||||||||||||| Sbjct: 37572082 actagagctccaacatc 37572066 Score = 54.0 bits (27), Expect = 4e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 348 gcagcgctcatgaatgggtaggcagcccaggagctccacgccagtgtgactgtcacgacg 407 ||||| |||||||||| ||||||||| || | | |||| |||||||||||||||| ||| Sbjct: 37758058 gcagcactcatgaatgaataggcagcc-agaaaccccacaccagtgtgactgtcactacg 37758116 Query: 408 atgatct 414 ||||||| Sbjct: 37758117 atgatct 37758123 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 28 agtcaattacgtggtccaaagcacgagatgccctttacaaca 69 |||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 37572487 agtcaattgagtggtccaaagtacgagaagccctttacaaca 37572446
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 218 bits (110), Expect = 1e-53 Identities = 175/197 (88%) Strand = Plus / Minus Query: 264 tctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatggcc 323 |||||||||||||||||||| || || || || ||||||||||| || ||||| | |||| Sbjct: 32736 tctatggcaattatgaggaaaccaactgaaatatacatgaggaagacgggatacagggcc 32677 Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 |||||||||||||||||||| || ||||| ||||||||||| || ||||||||||| ||| Sbjct: 32676 agagcctttctccttgggttaactgcagcactcatgaatggatatgcagcccaggaactc 32617 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttcagcaagcan 443 || |||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 32616 catgccaatgtgacggtcactacgatgatctttagtatgacattgtccttcagcatgcaa 32557 Query: 444 attagagctccaacatc 460 | ||||||||||||||| Sbjct: 32556 actagagctccaacatc 32540 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 28 agtcaattacgtggtccaaagcacgagatgccctttacaaca 69 |||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 32961 agtcaattgagtggtccaaagtacgagaagccctttacaaca 32920
>dbj|AK108852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A09, full insert sequence Length = 1062 Score = 202 bits (102), Expect = 7e-49 Identities = 173/197 (87%) Strand = Plus / Minus Query: 264 tctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatggcc 323 |||||||||||||||||||| || || || || ||||||||||| || ||||| | |||| Sbjct: 958 tctatggcaattatgaggaaaccaactgaaatatacatgaggaagacgggatacagggcc 899 Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||||||| ||||||||| || ||||| ||||||||||| || ||||||||||| ||| Sbjct: 898 tgagcctttccccttgggttaactgcagcactcatgaatggatatgcagcccaggaactc 839 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttcagcaagcan 443 || |||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 838 catgccaatgtgacggtcactacgatgatctttagtatgacattgtccttcagcatgcaa 779 Query: 444 attagagctccaacatc 460 | ||||||||||||||| Sbjct: 778 actagagctccaacatc 762
>ref|NM_190764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1995 Score = 188 bits (95), Expect = 1e-44 Identities = 145/162 (89%) Strand = Plus / Minus Query: 299 catgaggaatacaggatatatggccagagcctttctccttgggttcacagcagcgctcat 358 ||||||||| || ||||| | |||||||||||||||||||||||| || ||||| ||||| Sbjct: 780 catgaggaagacgggatacagggccagagcctttctccttgggttaactgcagcactcat 721 Query: 359 gaatgggtaggcagcccaggagctccacgccagtgtgactgtcacgacgatgatctttag 418 |||||| || ||||||||||| ||||| |||| |||||| ||||| |||||||||||||| Sbjct: 720 gaatggatatgcagcccaggaactccatgccaatgtgacggtcactacgatgatctttag 661 Query: 419 tatgacattgtccttcagcaagcanattagagctccaacatc 460 |||||||||||||||||||| ||| | ||||||||||||||| Sbjct: 660 tatgacattgtccttcagcatgcaaactagagctccaacatc 619
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05, complete sequence Length = 109126 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 |||||||| || || ||||||||||| || |||| |||||| ||||| |||||||||| Sbjct: 70287 taatctattgcgatgatgaggaacccaacagagacgtacataaggaagacaggatatagt 70346 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| Sbjct: 70347 gccaacgcctttctccttgggttaacagcagcactcatgaatggatatgctgcccaggag 70406 Query: 381 ctccacgcca 390 ||||| |||| Sbjct: 70407 ctccaggcca 70416
>ref|XM_475307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 840 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 |||||||| || || ||||||||||| || |||| |||||| ||||| |||||||||| Sbjct: 839 taatctattgcgatgatgaggaacccaacagagacgtacataaggaagacaggatatagt 780 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| Sbjct: 779 gccaacgcctttctccttgggttaacagcagcactcatgaatggatatgctgcccaggag 720 Query: 381 ctccacgcca 390 ||||| |||| Sbjct: 719 ctccaggcca 710
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 |||||||| || || ||||||||||| || |||| |||||| ||||| |||||||||| Sbjct: 1003 taatctattgcgatgatgaggaacccaacagagacgtacataaggaagacaggatatagt 1062 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| Sbjct: 1063 gccaacgcctttctccttgggttaacagcagcactcatgaatggatatgctgcccaggag 1122 Query: 381 ctccacgcca 390 ||||| |||| Sbjct: 1123 ctccaggcca 1132
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 |||||||| || || ||||||||||| || |||| |||||| ||||| |||||||||| Sbjct: 21283681 taatctattgcgatgatgaggaacccaacagagacgtacataaggaagacaggatatagt 21283740 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| Sbjct: 21283741 gccaacgcctttctccttgggttaacagcagcactcatgaatggatatgctgcccaggag 21283800 Query: 381 ctccacgcca 390 ||||| |||| Sbjct: 21283801 ctccaggcca 21283810
>dbj|AK102974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K22, full insert sequence Length = 1088 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 261 taatctatggcaattatgaggaacccgaccgagatgtacatgaggaatacaggatatatg 320 |||||||| || || ||||||||||| || |||| |||||| ||||| |||||||||| Sbjct: 934 taatctattgcgatgatgaggaacccaacagagacgtacataaggaagacaggatatagt 875 Query: 321 gccagagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggag 380 |||| ||||||||||||||||| |||||||| ||||||||||| || || ||||||||| Sbjct: 874 gccaacgcctttctccttgggttaacagcagcactcatgaatggatatgctgcccaggag 815 Query: 381 ctccacgcca 390 ||||| |||| Sbjct: 814 ctccaggcca 805
>ref|NM_119172.2| Arabidopsis thaliana unknown protein AT4G30260 mRNA, complete cds Length = 1215 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 883 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 824 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 823 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 772
>emb|AL109796.1|ATF9N11 Arabidopsis thaliana DNA chromosome 4, BAC clone F9N11 Length = 87635 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 83584 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 83643 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 83644 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 83695
>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72 Length = 198924 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 156605 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 156664 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 156665 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 156716
>gb|AY093179.1| Arabidopsis thaliana putative protein (not annotated) mRNA, complete cds Length = 1204 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 881 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 822 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 821 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 770
>gb|AY056083.1| Arabidopsis thaliana AT4g30260/F9N11_110 mRNA, complete cds Length = 843 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 779 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 720 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 719 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 668
>gb|AY045675.1| Arabidopsis thaliana AT4g30260/F9N11_110 mRNA, complete cds Length = 1193 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 871 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 812 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 811 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 760
>emb|BX826623.1|CNS0A445 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB49ZA04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1113 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 324 agagcctttctccttgggttcacagcagcgctcatgaatgggtaggcagcccaggagctc 383 ||||| ||||| || |||||||| || ||||||||||| || || |||||||| |||||| Sbjct: 838 agagcttttcttctcgggttcactgcggcgctcatgaaaggataagcagcccaagagctc 779 Query: 384 cacgccagtgtgactgtcacgacgatgatctttagtatgacattgtccttca 435 || || || || || | ||| |||| ||||| ||||| |||||||| |||| Sbjct: 778 caggcaagagtcacagacacaacgaccatcttcagtatcacattgtctttca 727
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 54.0 bits (27), Expect = 4e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 348 gcagcgctcatgaatgggtaggcagcccaggagctccacgccagtgtgactgtcacgacg 407 ||||| |||||||||| ||||||||| || | | |||| |||||||||||||||| ||| Sbjct: 86359 gcagcactcatgaatgaataggcagcc-agaaaccccacaccagtgtgactgtcactacg 86417 Query: 408 atgatct 414 ||||||| Sbjct: 86418 atgatct 86424
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 54.0 bits (27), Expect = 4e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 348 gcagcgctcatgaatgggtaggcagcccaggagctccacgccagtgtgactgtcacgacg 407 ||||| |||||||||| ||||||||| || | | |||| |||||||||||||||| ||| Sbjct: 17306 gcagcactcatgaatgaataggcagcc-agaaaccccacaccagtgtgactgtcactacg 17364 Query: 408 atgatct 414 ||||||| Sbjct: 17365 atgatct 17371
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 aattttaacatttcaggtgttactaca 242 |||||||||||||||||||||| |||| Sbjct: 348336 aattttaacatttcaggtgttattaca 348310
>gb|AC008434.5| Homo sapiens chromosome 5 clone CTC-325J23, complete sequence Length = 103701 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 tccagggacaaagtatattca 182 ||||||||||||||||||||| Sbjct: 29025 tccagggacaaagtatattca 29005
>gb|AC005724.3| Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete sequence Length = 88413 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 297 tacatgaggaatacaggatatatggccagagcctttctccttgggttcacagcagcgctc 356 ||||||||||| || || |||| || || || ||||| |||||||| || || | |||| Sbjct: 79684 tacatgaggaagacggggtatagagcgagtgcttttcttcttgggttaaccgctgagctc 79625 Query: 357 atgaatgggtaggcagcccaggagctcca 385 || || ||||| |||||||| |||||||| Sbjct: 79624 ataaaagggtaagcagcccatgagctcca 79596
>gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 map CIC06E08, complete sequence Length = 99359 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 297 tacatgaggaatacaggatatatggccagagcctttctccttgggttcacagcagcgctc 356 ||||||||||| || || |||| || || || ||||| |||||||| || || | |||| Sbjct: 11541 tacatgaggaagacggggtatagagcgagtgcttttcttcttgggttaaccgctgagctc 11482 Query: 357 atgaatgggtaggcagcccaggagctcca 385 || || ||||| |||||||| |||||||| Sbjct: 11481 ataaaagggtaagcagcccatgagctcca 11453
>gb|BT024504.1| Arabidopsis thaliana At2g18840 mRNA, complete cds Length = 846 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 297 tacatgaggaatacaggatatatggccagagcctttctccttgggttcacagcagcgctc 356 ||||||||||| || || |||| || || || ||||| |||||||| || || | |||| Sbjct: 809 tacatgaggaagacggggtatagagcgagtgcttttcttcttgggttaaccgctgagctc 750 Query: 357 atgaatgggtaggcagcccaggagctcca 385 || || ||||| |||||||| |||||||| Sbjct: 749 ataaaagggtaagcagcccatgagctcca 721
>emb|BX821663.1|CNS0AA5E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL62ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 731 Score = 42.1 bits (21), Expect = 1.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 297 tacatgaggaatacaggatatatggccagagcctttctccttgggttcacagcagcgctc 356 ||||||||||| || || |||| || || || ||||| |||||||| || || | |||| Sbjct: 524 tacatgaggaagacggggtatagagcgagtgcttttcttcttgggttaaccgctgagctc 465 Query: 357 atgaatgggtaggcagcccaggagctcca 385 || || ||||| |||||||| |||||||| Sbjct: 464 ataaaagggtaagcagcccatgagctcca 436
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 1187239 gtgaaggccaggttctcgac 1187220
>ref|XM_380384.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00208.1) partial mRNA Length = 3168 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aaggccaggttctcgacaaa 146 |||||||||||||||||||| Sbjct: 86 aaggccaggttctcgacaaa 67
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 40035 gtgaaggccaggttctcgac 40054
>gb|AF317474.1| Sinorhizobium meliloti adenylate kinase (adk), ribosomal protein S13 (rpsM), ribosomal protein S11 (rpsK), RNA polymerase alpha-subunit (rpoA), and ribosomal protein L17 (rplQ) genes, complete cds Length = 4327 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 2739 gtgaaggccaggttctcgac 2758
>gb|AE009519.1| Brucella melitensis 16M chromosome I, section 76 of 195 of the complete sequence Length = 10564 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 4736 gtgaaggccaggttctcgac 4755
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 1205347 gtgaaggccaggttctcgac 1205328
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gtgaaggccaggttctcgac 143 |||||||||||||||||||| Sbjct: 1202498 gtgaaggccaggttctcgac 1202479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,491,853 Number of Sequences: 3902068 Number of extensions: 3491853 Number of successful extensions: 62886 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62782 Number of HSP's gapped (non-prelim): 104 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
