ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95a06 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 129 bits (324), Expect = 3e-30 Identities = 64/64 (100%), Positives = 64/64 (100%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL Sbjct: 325 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 384 Query: 243 VGLA 232 VGLA Sbjct: 385 VGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 127 bits (320), Expect = 8e-30 Identities = 63/64 (98%), Positives = 63/64 (98%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 FVSEAESGKRLAQVV EPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL Sbjct: 250 FVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 309 Query: 243 VGLA 232 VGLA Sbjct: 310 VGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 127 bits (318), Expect = 1e-29 Identities = 63/64 (98%), Positives = 63/64 (98%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 FVSEAESGKRLAQVVAEP LTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL Sbjct: 325 FVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 384 Query: 243 VGLA 232 VGLA Sbjct: 385 VGLA 388
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 121 bits (303), Expect = 8e-28 Identities = 59/64 (92%), Positives = 63/64 (98%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSEAESGKRLAQVV+EPSLTKSGVYWSWNKDSASFENQLS+EASD EKARKVWE+SEKL Sbjct: 335 YVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKL 394 Query: 243 VGLA 232 VGLA Sbjct: 395 VGLA 398
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 118 bits (296), Expect = 5e-27 Identities = 58/64 (90%), Positives = 62/64 (96%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWELSEKL Sbjct: 335 YVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKL 394 Query: 243 VGLA 232 VGLA Sbjct: 395 VGLA 398
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 117 bits (294), Expect = 8e-27 Identities = 57/64 (89%), Positives = 62/64 (96%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEKL Sbjct: 332 YVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKL 391 Query: 243 VGLA 232 VGLA Sbjct: 392 VGLA 395
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 116 bits (290), Expect = 2e-26 Identities = 56/64 (87%), Positives = 62/64 (96%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE+E+GKRLAQVVA+PSLTKSGVYWSWNK SASFENQLSQEASD EKAR+VWE+SEKL Sbjct: 342 YVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKL 401 Query: 243 VGLA 232 VGLA Sbjct: 402 VGLA 405
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 114 bits (286), Expect = 7e-26 Identities = 56/64 (87%), Positives = 60/64 (93%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE ESGKRLAQVV++PSLTKSGVYWSWN SASFENQLSQEASD EKARKVWE+SEKL Sbjct: 336 YVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKL 395 Query: 243 VGLA 232 VGLA Sbjct: 396 VGLA 399
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 114 bits (284), Expect = 1e-25 Identities = 55/64 (85%), Positives = 60/64 (93%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE ESGKRLAQVV++PSLTKSGVYWSWN SASFENQLS+EASD EKARKVWE+SEKL Sbjct: 338 YVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKL 397 Query: 243 VGLA 232 VGLA Sbjct: 398 VGLA 401
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 107 bits (266), Expect = 1e-23 Identities = 50/64 (78%), Positives = 60/64 (93%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE E+GKRLAQVV++PSL KSGVYWSWN +S+SFENQLS+EASD EKA+K+WE+SEKL Sbjct: 338 YVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKL 397 Query: 243 VGLA 232 VGLA Sbjct: 398 VGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 104 bits (260), Expect = 7e-23 Identities = 46/63 (73%), Positives = 59/63 (93%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE E+GKR+AQVV++P L+KSGVYWSWNKDS SFEN+LS+EAS+PEKA+++WELSE+L Sbjct: 395 YVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERL 454 Query: 243 VGL 235 GL Sbjct: 455 SGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 84.7 bits (208), Expect = 8e-17 Identities = 35/64 (54%), Positives = 51/64 (79%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKL 244 +VSE E+G+RLA V+++P L KSG YWSW+ + SF+NQ+S+E +D KA K+W++S KL Sbjct: 333 YVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKL 392 Query: 243 VGLA 232 VGL+ Sbjct: 393 VGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 70.9 bits (172), Expect = 1e-12 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 4/68 (5%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSW----NKDSASFENQLSQEASDPEKARKVWEL 256 +VS+ +G+R AQVVA+P +SGV+WSW + SF +LS++ +D KA+++WEL Sbjct: 255 YVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWEL 314 Query: 255 SEKLVGLA 232 SEKLVGLA Sbjct: 315 SEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 65.5 bits (158), Expect = 5e-11 Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 4/67 (5%) Frame = -2 Query: 423 FVSEAESGKRLAQVVAEPSLTKSGVYWSW-NKDSA---SFENQLSQEASDPEKARKVWEL 256 +VS+ +G+R+A VVA+ SGV+WSW N+ A +F +LS++ SD +KA+++W+L Sbjct: 255 YVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDL 314 Query: 255 SEKLVGL 235 SEKLVGL Sbjct: 315 SEKLVGL 321
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 33.9 bits (76), Expect = 0.16 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = -2 Query: 381 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA*STANP 214 VAE SG Y+ ++ A S EA D E AR++W S +LVGLA + +P Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLAMAHGSP 326
>FIG2_YEAST (P25653) Factor-induced gene 2 precursor (Cell wall adhesin FIG2)| Length = 1609 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/56 (35%), Positives = 29/56 (51%) Frame = +2 Query: 194 RCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSKDAESLFQLQYTPDF 361 R H+S F + +P+S SL S T F+ S+ +SW S ++E L T DF Sbjct: 140 RTSHSSSSFELPVTAPSSSSLPSSTSLTFT-SVNPSQSWTSFNSEKSSALSSTIDF 194
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -2 Query: 381 VAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGL 235 VAE SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -2 Query: 315 ENQLSQEASDPEKARKVWELSEKLVGL 235 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 107 QERPCEWPRECIDLVWKMYNFRQTLE**NRRPD*G 3 Q P WP + +L WK+YN+ TL+ NR D G Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAG 124
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 315 ENQLSQEASDPEKARKVWELSEKLVGL 235 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 303 SQEASDPEKARKVWELSEKLV 241 S+EA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.3 bits (64), Expect = 3.9 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +1 Query: 25 YYSNVCRKLYIFHTRSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 192 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 384 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 283 V+A PS T ++ W +DSA N + ++DP Sbjct: 371 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 404
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 384 VVAEPSLTKSGVYWSWNKDSASFENQLSQEASDP 283 V+A PS T ++ W +DSA N + ++DP Sbjct: 372 VIASPSQTHPDYFYQWIRDSALTINSIVSHSADP 405
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +2 Query: 185 RRPRCMHASMGFAVDHASPTSFSLSSQTLRAFSGSLASWESWFSK 319 R+ R + FA+ H T+ +LSSQ L AFS +A S+ S+ Sbjct: 907 RKSRVLETDPAFAIAHR--TASTLSSQQLLAFSADVARGMSYLSQ 949
>WWOX_BRARE (Q803A8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 412 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 303 SQEASDPEKARKVWELSEKLV 241 S +A DP A +WELSE+LV Sbjct: 382 SPQAQDPAAALSLWELSERLV 402
>NIFK_THIFE (P15052) Nitrogenase molybdenum-iron protein beta chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 518 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 321 SFENQL-SQEASDPEKARKVWELSEKLVGLA*STANPMDACMHLGR 187 +FEN+L + + + ++ K WE EK + NP AC LGR Sbjct: 30 TFENRLPADQVARGQEWTKTWEYREKNFAREALSVNPDKACQPLGR 75
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +2 Query: 191 PRCMHASMGFAVDHASPTSFSLSSQTLRA--FSGSLASWESWFSKDAESLFQLQYTPDFV 364 P H+S+ + +++ P FS SSQT + ++ +LAS + E L Q ++ Sbjct: 318 PSPSHSSIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMS 377 Query: 365 RLGSATTCASLLPD 406 R+ + AS L + Sbjct: 378 RISDDSRTASQLDE 391
>RPOB_STRPM (Q48VR1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP6 (Q5XE97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>RPOB_STRP3 (Q8K8W3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = -1 Query: 253 REARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRRRGLASGR 83 R R +H +G M TP + + NL FG+ + Y F++ R+ A+GR Sbjct: 502 RAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRKVDRATGR 560
>ARLY_CHLTE (Q8KDJ5) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 463 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 296 SWESWFSKDAESLFQLQYTPDFVRLGSATTCASLLP 403 +W S F +DA+ L L+ + LG+A S LP Sbjct: 178 AWHSMFGRDAQRLADLRKRANISPLGAAAFAGSTLP 213
>CEF1_CANGA (Q6FUG1) Pre-mRNA-splicing factor CEF1| Length = 541 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 408 ESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEA 292 E KR+AQ+ L ++G+ S K +EN++ A Sbjct: 184 EESKRIAQIQKRRELKQAGINTSLKKSKKKYENEIDYNA 222
>DHAK_ECOLI (P76015) PTS-dependent dihydroxyacetone kinase,| dihydroxyacetone-binding subunit dhaK (EC 2.7.-.-) Length = 366 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 258 LSEKLVGLA*STANPMDACMHLGRR 184 L EKLVG A + +DAC LGR+ Sbjct: 165 LIEKLVGAAAERGDSLDACAELGRK 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,410,116 Number of Sequences: 219361 Number of extensions: 873857 Number of successful extensions: 2740 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2737 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
