ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet95a03 |
|---|---|
| Clone Library Name | barley_pub |
>COBL2_ARATH (Q8L8Q7) COBRA-like protein 2 precursor| Length = 441 Score = 57.4 bits (137), Expect = 2e-08 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 1/38 (2%) Frame = -3 Query: 439 VYFNGDNCVMPSPDDYPWLPSASP-LTKQPWTLPLLVF 329 +YFNGDNCVMP PD YPWLP+ASP + P+ + L+ F Sbjct: 397 IYFNGDNCVMPPPDSYPWLPNASPNIATSPFVILLITF 434
>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)| Length = 456 Score = 48.9 bits (115), Expect = 6e-06 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 4/42 (9%) Frame = -3 Query: 439 VYFNGDNCVMPSPDDYPWLPSASPLTKQPWT----LPLLVFW 326 +YFNGDNCVMP PD YP+LP+ ++ + LPLLVF+ Sbjct: 411 IYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVAAVLLPLLVFF 452
>COBL1_ARATH (Q9SRT7) COBRA-like protein 1 precursor| Length = 452 Score = 48.5 bits (114), Expect = 7e-06 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -3 Query: 439 VYFNGDNCVMPSPDDYPWLPS 377 +YFNGDNCVMP PD YPWLP+ Sbjct: 406 IYFNGDNCVMPPPDSYPWLPN 426
>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor| Length = 431 Score = 42.0 bits (97), Expect = 7e-04 Identities = 16/36 (44%), Positives = 26/36 (72%) Frame = -3 Query: 439 VYFNGDNCVMPSPDDYPWLPSASPLTKQPWTLPLLV 332 VYFNGD C++P PD YP+LP+++ ++L +L+ Sbjct: 389 VYFNGDECMLPPPDSYPFLPNSAQGNFASFSLTILL 424
>COBL6_ARATH (O04500) COBRA-like protein 6 precursor| Length = 454 Score = 40.8 bits (94), Expect = 0.002 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -3 Query: 439 VYFNGDNCVMPSPDDYPWLPSAS 371 + FNGD CVMPSPDD+P LP ++ Sbjct: 404 ILFNGDECVMPSPDDFPRLPKSA 426
>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (37LRP) Length = 296 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAMETL 82 T LR D+ + C KGA +V L+W++LA E L Sbjct: 150 TDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVL 183
>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAMETL 82 T LR D+ + C KGA +V L+W++LA E L Sbjct: 149 TDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVL 182
>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) (Colon carcinoma laminin-binding protein) (NEM/1CHD4) (Multidrug resistance-associated protein MGr1-Ag) Length = 294 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAMETL 82 T LR D+ + C KGA +V L+W++LA E L Sbjct: 149 TDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVL 182
>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)| Length = 294 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAMETL 82 T LR D+ + C KGA +V L+W++LA E L Sbjct: 149 TDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVL 182
>Y2416_LEPIC (Q72PQ2) UPF0078 membrane protein LIC_12416| Length = 216 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/78 (28%), Positives = 31/78 (39%) Frame = -1 Query: 279 PRDSASFKSLSGSMMCAATGHLFIQFHGCIEETGVALRKADMFVFCKLKGAGNVFLVWYI 100 P F+ L G +CA GH+F F G GVA V + G V + W + Sbjct: 76 PEGGIPFQLLCG--VCAVLGHMFSPFLGFRGGKGVATTFGVFLVLTPIACLGAVLVFWVV 133 Query: 99 LAMETLVNLVTAI*VITV 46 V+L + IT+ Sbjct: 134 YKFFKFVSLGSIFASITL 151
>Y1304_LEPIN (P59247) UPF0078 membrane protein LA_1304| Length = 216 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/78 (28%), Positives = 31/78 (39%) Frame = -1 Query: 279 PRDSASFKSLSGSMMCAATGHLFIQFHGCIEETGVALRKADMFVFCKLKGAGNVFLVWYI 100 P F+ L G +CA GH+F F G GVA V + G V + W + Sbjct: 76 PEGGIPFQLLCG--VCAVLGHMFSPFLGFRGGKGVATTFGVFLVLTPIACLGAVLVFWVV 133 Query: 99 LAMETLVNLVTAI*VITV 46 V+L + IT+ Sbjct: 134 YKFFKFVSLGSIFASITL 151
>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAME 88 T LR D+ + C KGA +V L+W++LA E Sbjct: 149 TDSPLRYVDIAIPCNNKGAHSVGLMWWMLARE 180
>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin| receptor) Length = 294 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 183 TGVALRKADMFVFCKLKGAGNVFLVWYILAMETL 82 T L D+ + C KGA +V L+W++LA E L Sbjct: 149 TDSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVL 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,589,999 Number of Sequences: 219361 Number of extensions: 1160482 Number of successful extensions: 2549 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2509 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2549 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
