ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLDSA_STRFR (Q53U20) L-glutamine:2-deoxy-scyllo-inosose aminotra... 30 1.4
2GLDSA_STRRI (Q4R0W2) L-glutamine:2-deoxy-scyllo-inosose aminotra... 30 1.8
3PNPH_YEAST (Q05788) Purine nucleoside phosphorylase (EC 2.4.2.1)... 28 5.3
4NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 pr... 28 6.9
5BDBC_CHLMU (Q9PKL7) Probable disulfide formation protein (Disulf... 27 9.1
6RNMC_MOMCH (P23540) Ribonuclease MC (EC 3.1.27.1) (RNase MC) 27 9.1

>GLDSA_STRFR (Q53U20) L-glutamine:2-deoxy-scyllo-inosose aminotransferase (EC|
           2.6.1.-) (L-glutamine:DOI aminotransferase)
           (L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose
           aminotransferase) (L-glutamine:amino-DOI
           aminotransferase) (Bifunctional L-glutamine:
          Length = 424

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 154 PKP*PGAPPRCLVITGSGSWYISSP 228
           P+P PG P     + GSG W IS P
Sbjct: 22  PQPAPGVPAAVAEVLGSGRWSISGP 46



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>GLDSA_STRRI (Q4R0W2) L-glutamine:2-deoxy-scyllo-inosose aminotransferase (EC|
           2.6.1.-) (L-glutamine:DOI aminotransferase)
           (L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose
           aminotransferase) (L-glutamine:amino-DOI
           aminotransferase)
          Length = 424

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 154 PKP*PGAPPRCLVITGSGSWYISSP 228
           P+P PG P     + GSG W IS P
Sbjct: 22  PQPAPGVPDAVADVLGSGRWSISGP 46



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>PNPH_YEAST (Q05788) Purine nucleoside phosphorylase (EC 2.4.2.1) (Inosine|
           phosphorylase) (PNP)
          Length = 311

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 175 PPRCLVITGSGSWYISSPLNRD 240
           PPR L+I GSG   IS+ L+RD
Sbjct: 37  PPRTLIICGSGLGGISTKLSRD 58



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>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            (hNotch4) [Contains: Notch 4 extracellular truncation;
            Notch 4 intracellular domain]
          Length = 2003

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 154  PKP*PGAPPRCLVITGSG 207
            P P PG PPRC  ++G G
Sbjct: 1104 PSPKPGFPPRCACLSGYG 1121



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>BDBC_CHLMU (Q9PKL7) Probable disulfide formation protein (Disulfide|
           oxidoreductase) (Thiol-disulfide oxidoreductase)
          Length = 135

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 261 LVGLVRSLCSCPFYWSWIASCLGT 332
           ++ L+RS C    Y++W+ SC+GT
Sbjct: 1   MIKLLRSYC---LYFAWLVSCIGT 21



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>RNMC_MOMCH (P23540) Ribonuclease MC (EC 3.1.27.1) (RNase MC)|
          Length = 191

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 207 PRTCNYQASGRSPGLGFRLATKNG 136
           P  C++Q SG  PG G R  T +G
Sbjct: 12  PAVCSFQKSGSCPGSGLRTFTIHG 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,287,699
Number of Sequences: 219361
Number of extensions: 855772
Number of successful extensions: 1988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1988
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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