ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
2dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.084
3gb|AC134823.41| Medicago truncatula clone mth2-20d18, complete s... 44 0.33
4gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 42 1.3
5gb|AC155241.2| Mus musculus BAC clone RP24-485P18 from chromosom... 42 1.3
6gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, com... 40 5.2
7gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, comple... 40 5.2
8ref|XM_537910.2| PREDICTED: Canis familiaris similar to RAD52B (... 40 5.2
9emb|AL359972.10| Human DNA sequence from clone RP1-105K17 on chr... 40 5.2
10emb|AL135923.15| Human DNA sequence from clone RP11-29B9 on chro... 40 5.2
11gb|AC115282.2| Homo sapiens chromosome 3 clone RP11-122D19, comp... 40 5.2
12gb|AC109581.2| Homo sapiens chromosome 3 clone RP11-168H3, compl... 40 5.2
13gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, com... 40 5.2
14gb|AC009523.6|AC009523 Drosophila melanogaster, chromosome 2L, r... 40 5.2
15gb|AC008182.2|AC008182 Drosophila melanogaster, chromosome 2L, r... 40 5.2
16gb|AE003623.2| Drosophila melanogaster chromosome 2L, section 32... 40 5.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 348      ttacccaggtgtagtcgctggggatggtgaaggggtcggtgtt 390
                ||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct: 19561155 ttacccaagtgtagtcactcgggatcgtgaacgggtcggtgtt 19561197



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                      
Query: 171      ggctcctcccagatgctt-ggtaattacaggttctggg 207
                ||||| ||||||||| || |||||||||||||||||||
Sbjct: 19560998 ggctcttcccagatgatttggtaattacaggttctggg 19561035
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 348    ttacccaggtgtagtcgctggggatggtgaaggggtcggtgtt 390
              ||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct: 104499 ttacccaagtgtagtcactcgggatcgtgaacgggtcggtgtt 104541



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                    
Query: 171    ggctcctcccagatgctt-ggtaattacaggttctggg 207
              ||||| ||||||||| || |||||||||||||||||||
Sbjct: 104342 ggctcttcccagatgatttggtaattacaggttctggg 104379
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>gb|AC134823.41| Medicago truncatula clone mth2-20d18, complete sequence
          Length = 119033

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 246    gatcaattcaaaccgctagttg 267
              ||||||||||||||||||||||
Sbjct: 117146 gatcaattcaaaccgctagttg 117125
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aatattgctgaagaagaaggg 90
              |||||||||||||||||||||
Sbjct: 614081 aatattgctgaagaagaaggg 614101
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>gb|AC155241.2| Mus musculus BAC clone RP24-485P18 from chromosome 12, complete
             sequence
          Length = 144320

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   ttagttaggtctctttgctct 290
             |||||||||||||||||||||
Sbjct: 29362 ttagttaggtctctttgctct 29382
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>gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, complete sequence
          Length = 187888

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    ccctttttactggtcttgga 312
              ||||||||||||||||||||
Sbjct: 177079 ccctttttactggtcttgga 177060
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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tgggtcatggtatattagct 223
             ||||||||||||||||||||
Sbjct: 60617 tgggtcatggtatattagct 60598



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tgggtcatggtatattagct 223
             ||||||||||||||||||||
Sbjct: 30913 tgggtcatggtatattagct 30894
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>ref|XM_537910.2| PREDICTED: Canis familiaris similar to RAD52B (LOC480794), mRNA
          Length = 1218

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 159 accctaacccggggctcctcccag 182
           ||||| ||||||||||||||||||
Sbjct: 35  accctcacccggggctcctcccag 58
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>emb|AL359972.10| Human DNA sequence from clone RP1-105K17 on chromosome Xq13.2-21.1,
            complete sequence
          Length = 80630

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 66   caacaatattgctgaagaagaagg 89
            |||| |||||||||||||||||||
Sbjct: 7441 caactatattgctgaagaagaagg 7418
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>emb|AL135923.15| Human DNA sequence from clone RP11-29B9 on chromosome 9p23-24.3
             Contains two novel genes, complete sequence
          Length = 152470

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 282   ctttgctcttgccctttttactgg 305
             |||| |||||||||||||||||||
Sbjct: 31824 cttttctcttgccctttttactgg 31847
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>gb|AC115282.2| Homo sapiens chromosome 3 clone RP11-122D19, complete sequence
          Length = 181061

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     agtgtgtacaagtacaacaa 71
              ||||||||||||||||||||
Sbjct: 144639 agtgtgtacaagtacaacaa 144658
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>gb|AC109581.2| Homo sapiens chromosome 3 clone RP11-168H3, complete sequence
          Length = 155332

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    agtgtgtacaagtacaacaa 71
             ||||||||||||||||||||
Sbjct: 29089 agtgtgtacaagtacaacaa 29108
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>gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, complete sequence
          Length = 212598

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    ccctttttactggtcttgga 312
              ||||||||||||||||||||
Sbjct: 167991 ccctttttactggtcttgga 168010
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>gb|AC009523.6|AC009523 Drosophila melanogaster, chromosome 2L, region 29E-29F, BAC clone
              BACR05B09, complete sequence
          Length = 197901

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     aatcaacaaaaggtaaaaca 112
              ||||||||||||||||||||
Sbjct: 193782 aatcaacaaaaggtaaaaca 193763
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>gb|AC008182.2|AC008182 Drosophila melanogaster, chromosome 2L, region 29F6-30A4, BAC clone
              BACR48E15, complete sequence
          Length = 192350

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     aatcaacaaaaggtaaaaca 112
              ||||||||||||||||||||
Sbjct: 114225 aatcaacaaaaggtaaaaca 114244
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>gb|AE003623.2| Drosophila melanogaster chromosome 2L, section 32 of 83 of the complete
              sequence
          Length = 234635

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     aatcaacaaaaggtaaaaca 112
              ||||||||||||||||||||
Sbjct: 124121 aatcaacaaaaggtaaaaca 124102


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,516,948
Number of Sequences: 3902068
Number of extensions: 3516948
Number of successful extensions: 61758
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61711
Number of HSP's gapped (non-prelim): 47
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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