ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP) 60 2e-09
2ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur... 57 2e-08
3ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur... 54 1e-07
4ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor 53 3e-07
5ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec... 53 4e-07
6ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur... 52 7e-07
7ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 49 6e-06
8ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 49 6e-06
9ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 48 1e-05
10ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 48 1e-05
11ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 46 4e-05
12PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 46 4e-05
13RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre... 44 2e-04
14GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment) 44 2e-04
15GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon... 43 3e-04
16GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein 42 6e-04
17GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A 42 7e-04
18GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7 41 0.001
19GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 41 0.001
20GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A 41 0.001
21GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 40 0.002
22SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 40 0.002
23GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10 40 0.002
24GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro... 40 0.004
25EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb... 39 0.006
26EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (... 39 0.006
27YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 38 0.011
28CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r... 37 0.018
29CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine... 37 0.018
30CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine... 37 0.018
31CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine... 37 0.018
32CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine... 37 0.018
33EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (... 37 0.018
34RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 37 0.024
35TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 37 0.031
36TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p... 37 0.031
37NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 37 0.031
38RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 37 0.031
39SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli... 36 0.040
40SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp... 36 0.040
41SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp... 36 0.040
42SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp... 36 0.040
43CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine... 36 0.040
44RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin... 36 0.040
45SAP49_SCHPO (O14102) Spliceosome-associated protein 49 36 0.040
46SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp... 36 0.040
47RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 36 0.053
48RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 35 0.069
49RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 35 0.069
50TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein) 35 0.069
51RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 35 0.069
52TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein) 35 0.069
53PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi... 35 0.090
54PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g... 35 0.12
55PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 34 0.15
56PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.15
57PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.15
58PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 34 0.15
59PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 34 0.15
60RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 34 0.20
61PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-... 34 0.20
62PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 34 0.20
63TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 33 0.45
64TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 33 0.45
65PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 32 0.58
66NUCL_MOUSE (P09405) Nucleolin (Protein C23) 32 0.76
67NUCL_HUMAN (P19338) Nucleolin (Protein C23) 32 0.76
68CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
69RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U... 32 0.76
70RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U... 32 0.76
71RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U... 32 0.76
72RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U... 32 0.76
73GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ... 32 0.76
74CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
75CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
76CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
77CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
78PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 32 0.76
79NUCL_MACFA (Q4R4J7) Nucleolin 32 0.76
80NUCL_RAT (P13383) Nucleolin (Protein C23) 32 0.76
81NUCL_PONPY (Q5RF26) Nucleolin 32 0.76
82NUCL_MESAU (P08199) Nucleolin (Protein C23) 32 0.76
83CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 32 0.76
84NUCL_XENLA (P20397) Nucleolin (Protein C23) 32 0.99
85FGF5_RAT (P48807) Fibroblast growth factor 5 precursor (FGF-5) (... 32 0.99
86MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote... 32 0.99
87PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 32 0.99
88YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 31 1.3
89RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei... 31 1.3
90PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 31 1.3
91PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 31 1.7
92PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
93PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
94PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
95PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
96PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
97PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi... 31 1.7
98PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi... 31 1.7
99YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i... 31 1.7
100CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 31 1.7
101MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote... 30 2.2
102MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote... 30 2.2
103GAR2_SCHPO (P41891) Protein gar2 30 2.2
104TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran... 30 2.2
105TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr... 30 2.2
106TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr... 30 2.2
107PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 30 2.2
108MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote... 30 2.2
109NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 30 2.9
110LARK_DROME (Q94901) RNA-binding protein lark 30 2.9
111RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro... 30 3.8
112NUCL_CHICK (P15771) Nucleolin (Protein C23) 30 3.8
113A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1 30 3.8
114MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote... 30 3.8
115A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1 30 3.8
116ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 29 4.9
117MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 29 4.9
118ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 29 4.9
119ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 29 4.9
120ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 29 4.9
121PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi... 29 4.9
122MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote... 29 4.9
123FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ... 28 8.4
124ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula... 28 8.4
125ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu... 28 8.4
126ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu... 28 8.4
127ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 28 8.4
128IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ... 28 8.4
129IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ... 28 8.4
130ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu... 28 8.4
131ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 28 8.4
132IF2_CAUCR (Q9AC25) Translation initiation factor IF-2 28 8.4

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 28/47 (59%), Positives = 37/47 (78%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           GRSRGFG    +S+ +++ AI+ALDGQ +DGR +RVNVA ERP+R F
Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQR 321
           RSRGFG    ++ E+ + A+  L+G +MDGR L VN AA R  P+R
Sbjct: 94  RSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139



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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 27/45 (60%), Positives = 34/45 (75%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG    +  ++L+ AISALDGQ ++GR +RVNVA ERP R
Sbjct: 282 GRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           +SRGFG    +S ++ ++A+   +  +++GR L VN AA R  R
Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232



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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG    +S+ ++  AI+ LDGQ +DGR +RVN A ERP+R
Sbjct: 229 GRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273



 Score = 35.0 bits (79), Expect = 0.090
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           RSRGFG    ++ E+ D A+      +++GR L VN AA R  R
Sbjct: 136 RSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179



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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG    AS+ ++  AI+ LDGQ +DGR +RVNVA +R +R
Sbjct: 268 GRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           +SRGFG    ++ E+ + A+   +  +++GR L VN AA R +R
Sbjct: 175 QSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218



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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 23/47 (48%), Positives = 36/47 (76%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           GRSRGFG   ++S ++++ AI +L+G ++DGR +RV+ A ERP+R F
Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 291
           GRSRGFG    ++KE++++A    +G E+DGR +RVN     A+R    F  G    S
Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 182



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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 23/47 (48%), Positives = 36/47 (76%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           GRSRGFG   ++S ++++ AI +L+G ++DGR +RV+ A ERP+R F
Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292



 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 291
           GRSRGFG    ++KE++++A    +G E+DGR +RVN     A+R    F  G    S
Sbjct: 126 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183



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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 22/45 (48%), Positives = 34/45 (75%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG   ++S E++++AI +LDG +++GR +RV+ A  RP R
Sbjct: 226 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVN 345
           GRSRGFG    +SKE++++A    +G E+DGR LRVN
Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161



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>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 22/45 (48%), Positives = 34/45 (75%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG   ++S E++++AI +LDG +++GR +RV+ A  RP R
Sbjct: 232 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVN 345
           GRSRGFG    +SKE++++A    +G E+DGR LRVN
Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161



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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   + S +++ +AI +LDG ++DGR +RV+ A  RP R
Sbjct: 242 GRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG    +S  ++++A    +G E+DGRPLRVN     P+R
Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173



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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 33/46 (71%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRS+GFG    +S +++  AI++L+G ++DGR +RV+ A  RP RG
Sbjct: 295 GRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG    ++  ++++A    +G E +GRPLRVN     P+R
Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKR 181



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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/42 (47%), Positives = 32/42 (76%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRSRGFG   ++S E ++SA+  ++  E++GRPLR+NVA ++
Sbjct: 255 GRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVN 345
           RSRGF      S E+   AI   DG ++ GR ++VN
Sbjct: 153 RSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188



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>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 32/42 (76%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G SRG+G   + S++D  +A+ ++ GQ+++GRPLR+N AA+R
Sbjct: 199 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 240



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>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           GRSRG+G   + S++  +SAISA++GQE++G  + VNVA + P
Sbjct: 69  GRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111



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>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           RSRGFG   ++++E + SAI  ++G+E+DGR + VN A  R  RG
Sbjct: 26  RSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGRG 70



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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           GRSRGFG   +  +    +AIS +DG+E++GR +RVN A +RP
Sbjct: 73  GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115



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>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRSRGFG   +  ++ +  AI  ++GQE+DGR + VN A  R   G
Sbjct: 44  GRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGG 89



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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRSRGFG   +  ++ +  AI  ++GQ++DGR + VN A  R   G
Sbjct: 46  GRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91



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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRSRGFG   +  ++ +  AI  ++GQ++DGR + VN A  R   G
Sbjct: 46  GRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91



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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRSRGFG   ++S++ +  AI  ++G+E+DGR + VN A  R
Sbjct: 46  GRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87



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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRSRGFG   +  ++ +  AI  ++GQ++DGR + VN A  R
Sbjct: 46  GRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87



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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRSRGFG   ++S+  +  AI  ++G+E+DGR + VN A  R
Sbjct: 46  GRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87



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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 27/95 (28%), Positives = 47/95 (49%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAAESMAWRF 276
           G S+G+    +AS +  D+AI A++GQ +  RP+ V+ A ++  +G   G+AAE +    
Sbjct: 139 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLL--- 195

Query: 275 SWTHGNTAEMLLQKTEACHHLKLPH*PPDAGSPPI 171
                  A+  L + +  H L     PP +   P+
Sbjct: 196 ------AAQNPLSQADRPHQLFADAPPPPSAPNPV 224



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAA 336
           G+ +G+G   + S+ED D AI  ++  ++ G+P+RVN A+
Sbjct: 51  GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 90



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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRSRGFG   +  ++ +  AI  ++G+E+DGR + VN A  R
Sbjct: 44  GRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85



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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRSRGFG   +  ++ +  AI  ++G+E+DGR + VN A  R   G
Sbjct: 44  GRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGG 89



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>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG   + + E+   A+S ++G+E++GR + V  A +R +R
Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G S+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374



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>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG   + + E+   A+S ++G+E++GR + V  A +R +R
Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G S+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374



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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAAESM 288
           G S+GF    +AS E  D+A+ A++GQ +  R + V+ A +R  +G   G AAE M
Sbjct: 139 GTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERM 194



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 446 RGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAA 336
           +GFG   +  +ED D AI  L+  ++ G+P++VN A+
Sbjct: 54  QGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90



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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAA 300
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A   ++   RG+  G+A
Sbjct: 45  RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98



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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAA 300
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A   ++   RG+  G+A
Sbjct: 45  RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98



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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAA 300
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A   ++   RG+  G+A
Sbjct: 45  RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98



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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAA 300
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A   ++   RG+  G+A
Sbjct: 45  RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98



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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAA 300
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A   ++   RG+  G+A
Sbjct: 45  RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98



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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/45 (37%), Positives = 30/45 (66%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRSRGFG   + + E+   A++ ++G+E++GR + V  A +R +R
Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G S+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374



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>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 21/45 (46%), Positives = 25/45 (55%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GR RGFG     +  +  +AI ALDG E  GR L+VN A  R  R
Sbjct: 39  GRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPRENR 83



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>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           G+S+G+G   + +K D ++AI  + GQ + GR +R N A  +P
Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186



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>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           G+S+G+G   + +K D ++AI  + GQ + GR +R N A  +P
Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186



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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = -2

Query: 446 RGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           +GFG   +++ ED   A+ AL G+ +D RP+R++ ++ RP
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           RSRG+G   + +K   + AI  + G+E+DGRP+  +++  +P
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248



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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAE--RPQRG 318
           RSRGFG   + + E    A+ A++G+ +DGR +RV+ A +  R  RG
Sbjct: 45  RSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRG 91



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>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGF    +  K D + A+ A+DG  +DGR LRV +A
Sbjct: 53  SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89



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>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGF    +  K D + A+ A+DG  +DGR LRV +A
Sbjct: 53  SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89



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>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGF    +  K D + A+ A+DG  +DGR LRV +A
Sbjct: 53  SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89



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>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGF    +  K D + A+ A+DG  +DGR LRV +A
Sbjct: 53  SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89



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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAE 333
           RSRGFG   + + +D   A+ A++G+ +DGR +RV+ A +
Sbjct: 44  RSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGK 83



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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRS+G+G   ++  E    A+  L+G E+ GRP+RV    ER   G
Sbjct: 301 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG 346



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>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAAE 294
           GRS+G+G   + S E  D+AI A++ Q +  +P+ V+ A +R  +G   G  AE
Sbjct: 137 GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAE 190



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>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGF    +  K D + A+ A+DG  +DGR LRV +A
Sbjct: 54  SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90



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>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAE--RPQRGF*CGA 303
           RSRGFG   + + E    A+ A++G+ +DGR +RV+ A +  R  RG   GA
Sbjct: 45  RSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGTRGGGFGA 96



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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRS+G+G   ++  E    A+  L+G E+ GRP++V    ER
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329



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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           GRS+G+G   ++  E    A+  L+G E+ GRP++V    ER
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329



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>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           G+S+G+G   + +K D ++AI  + GQ + GR +R N A  +P
Sbjct: 135 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177



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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 15/38 (39%), Positives = 28/38 (73%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           +S GFG   ++S+E++++AI AL+   ++G+ +RVN A
Sbjct: 223 KSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GRSR FG     + ED ++ I  L+  E+ GR ++VN+  E+P  G
Sbjct: 122 GRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNI-TEKPLEG 166



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>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 35.4 bits (80), Expect = 0.069
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           G+S+G+G   + +K D ++AI  + GQ + GR +R N A  +P
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194



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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED + A+  ++G+E+ G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272



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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +++ E+   A+    GQ   G+PL V +A ++  R
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385



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>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G+E++G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



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>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G+E++G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



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>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G+E++G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



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>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G+E++G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



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>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G+E++G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAA-ERP 327
           +S+GFG   +  + D + A+   DG+ +DGR LRV +A  +RP
Sbjct: 58  QSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100



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>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+SRGFG   +   ED   A+  ++G++++G+ + V  A ++ +R
Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272



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>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   ++S E+   A++ ++G+ +  +PL V +A  + +R
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +   ED   A+  ++G++M+G+ + V  A ++ +R
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272



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>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 291
           GRSRGF    +   +D   A+   +G E+DGR +RV+ +    A  P  G   G    S
Sbjct: 155 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 213



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>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 291
           GRSRGF    +   +D   A+   +G E+DGR +RV+ +    A  P  G   G    S
Sbjct: 157 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 215



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>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEM-DGRPLRVNVAAERPQR 321
           G+S+GFG   + + E  ++A+ AL+G++M +G+ L V  A ++ +R
Sbjct: 220 GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265



 Score = 31.6 bits (70), Expect = 0.99
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           GRS+GFG   + +  +   A++ L+G+ +  +PL V +A  + +R
Sbjct: 324 GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368



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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 603 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 649



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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+S+G+    +AS ED   A+++ + +E++GR +R+ +   R
Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 560



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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G+ RG+    +  + D+ SA    DG+++DGR + V+V   R  +G+
Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187



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>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G+ RG+    +  + D+ SA    DG+++DGR + V+V   R  +G+
Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187



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>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G+ RG+    +  + D+ SA    DG+++DGR + V+V   R  +G+
Sbjct: 144 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 190



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>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G+ RG+    +  + D+ SA    DG+++DGR + V+V   R  +G+
Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187



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>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRV 348
           G SRGFG  ++ +++++  AI   +G E++GR L V
Sbjct: 256 GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291



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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G S+G G   +A+ E+   A+S L G+ ++ +PL V +A  +  R
Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + +D   A+ +L+G + D +   V  A ++ +R
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296



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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 653



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+S+G+    +AS ED   A+++ + +E++GR +R+ +   R
Sbjct: 520 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561



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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 609 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 655



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+S+G+    +AS ED   A+++ +  E++GR +R+ +   R
Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 563



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA----AAESM 288
           GRS+G     + S+ D +  +    G E+DGR + +    E+ QR    G     + ES 
Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 488

Query: 287 AWRFS-WTHGNTAEMLLQKTEACHHLKLPH*P 195
               S  ++  T E L +  E    +K+P  P
Sbjct: 489 TLVLSNLSYSATEETLQEVFEKATFIKVPQNP 520



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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 608 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 654



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+S+G+    +AS ED   A+++ + +E++GR +R+ +   R
Sbjct: 521 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 562



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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 315
           G S+GFG   + S+ED  +A  A++  E+DG  + ++ A  + + GF
Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+S+G+    +AS ED   A+++ +  E++GR +R+ +   R
Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 560



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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+ +G+G   +  +E   SA+  L+G+E  GR LRV+ AA    +
Sbjct: 54  GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98



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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 291
           GR++GF    ++S ED   A+ + +  E++GR +R+  +     +G   G +A+S
Sbjct: 447 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQS 501



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQRG 318
           G S+GFG   +++ ED  +A  A++  E+DG  + ++ A  +   QRG
Sbjct: 537 GASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRG 584



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>FGF5_RAT (P48807) Fibroblast growth factor 5 precursor (FGF-5) (HBGF-5)|
          Length = 266

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +1

Query: 232 VFCSNISAVFPCVHEKRQAMLSAAAPHQNP-----RCGLSAATFTRSGRPSISCPSSAEI 396
           +FCS++    P   EKR       AP +NP       G S+ATF  S   S S P +A  
Sbjct: 9   IFCSHLILSAPAQGEKRLTPEGQPAPPRNPGDSSGSRGRSSATFASS---SASSPVAASP 65

Query: 397 ALSRSSFEAHSYKPNPRER 453
               S  E  S++ +P  R
Sbjct: 66  GSQGSGSEHSSFQWSPSGR 84



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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           S GFG   + +KE  + AIS LDG  +DG  L++ ++
Sbjct: 662 SMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLS 698



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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E+ + A++ ++ + + G+PL V +A  +  R
Sbjct: 401 GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445



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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           SRG+G   +  + D  SA++ + GQ    RP+RV +A  +
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266



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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 443 GFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GF    +  ++D + A   L+G E+ G  LRV ++  RP++G
Sbjct: 44  GFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQG 85



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>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   +++ E+   AI+  + Q + G+PL V +A  +  R
Sbjct: 358 GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 402



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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           R RGF    +   ED  +AI  ++  E+ GR +RVN+A
Sbjct: 45  RHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82



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>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379



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>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379



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>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379



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>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379



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>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379



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>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G+S+GFG   + + E    A+  L G+ +DG+ L V  A ++ +R
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G+ +GFG+  ++S E+   A+  ++G+ +  +PL V +   R
Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379



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>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G SRGFG   +++ E+   A+S ++G+ +  +PL + +A  +  R
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413



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>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           SRGFG   +++ E+  SAI  L+ QE  GR L V  A
Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177



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>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           G SR +G   ++S+++   A+  + G    GRPLR++VA+ +
Sbjct: 221 GLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262



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>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           S GFG   + +KE   + ISA+DG  +DG  +++ ++  +   G
Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAG 728



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>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           S GFG   ++SKE  + A  A+DG  +DG  L++ ++
Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686



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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP 327
           GRS+G+G   + + E   +A++A   +E+DGR + ++++  RP
Sbjct: 301 GRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343



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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA-AERP 327
           RSRGF    + + +D   A    +G E+DGR +RV+ +  +RP
Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 199



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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA-AERP 327
           RSRGF    + + +D   A    +G E+DGR +RV+ +  +RP
Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 199



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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA-AERP 327
           RSRGF    + + +D   A    +G E+DGR +RV+ +  +RP
Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 199



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>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           + RGF    +   ED  SAI  ++  E+ GR +RVNVA  RP R
Sbjct: 9   KHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA--RPVR 50



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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           S G+G   + +KE    A+ AL+G E+DG+ L V  A    QRG
Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFA----QRG 619



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>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           RSRGFG   +A ++D   A++     + +G  LRV++A  R
Sbjct: 64  RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRR 104



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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
 Frame = -2

Query: 410 DLDSAISALDGQEMDGRPLRVNVAAER---------PQRGF*CG 306
           D+  AI  L+G+ +DG+PL+V V+  R         P++ + CG
Sbjct: 131 DVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCG 174



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>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)|
           (Hexaribonucleotide-binding protein 2) (Repressor of
           tamoxifen transcriptional activity)
          Length = 390

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           S+GFG   + +  D D A   L G  ++GR + VN A  R
Sbjct: 159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 198



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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERP--QRG 318
           G S+GFG   ++S ED  +A  A++  E+DG  + ++ A  +   QRG
Sbjct: 588 GSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRG 635



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           GR +G+    + + ED   A+++ +  E++GR +R+  ++   Q+G
Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540



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>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1|
          Length = 396

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           S+GFG   + +  D D A   L G  ++GR + VN A  R
Sbjct: 154 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 193



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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           S GFG   + +KE  ++ ISA++G  +DG  L++ ++
Sbjct: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732



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>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1|
          Length = 397

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           S+GFG   + +  D D A   L G  ++GR + VN A  R
Sbjct: 155 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 194



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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           RSRGFG   +A+ E++D+A++A    ++DGR +    A  R
Sbjct: 52  RSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSR 91



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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           S GFG   + +KE  ++ I+A+DG  +DG  +++ ++
Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLS 744



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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           RSRGFG   +A+ E++D+A++A    ++DGR +    A  R
Sbjct: 52  RSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSR 91



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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           RSRGFG   +A+ E++D+A++A    ++DGR +    A  R
Sbjct: 52  RSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSR 91



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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           RSRGFG   +A+ E++D+A++A    ++DGR +    A  R
Sbjct: 52  RSRGFGFVTYATVEEVDAAMNARP-HKVDGRVVEPKRAVSR 91



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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 455 GRSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 321
           G SRGFG   +++ E+   A+  ++G+ +  +PL V +A  + +R
Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER 409



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>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVA 339
           S GFG   + +KE   + I+A+DG  +DG  +++ ++
Sbjct: 657 SMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKIS 693



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>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 449 SRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAER 330
           S+GFG       +D + A   L G  ++GR + VN A  R
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATAR 230



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>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 425 WASKEDLDSAISALDGQEMDGRPLRVNVA 339
           ++++ED   A+ AL+G+ +DG P+ V +A
Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301



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>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 425 WASKEDLDSAISALDGQEMDGRPLRVNVA 339
           ++++ED   A+ AL+G+ +DG P+ V +A
Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301



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>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 425 WASKEDLDSAISALDGQEMDGRPLRVNVA 339
           ++++ED   A+ AL+G+ +DG P+ V +A
Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301



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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           RSRGFG   ++S  ++D+A++A     +DGR +    A  R + G
Sbjct: 60  RSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 103



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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISA--LDGQEMDGRPLRVNVA 339
           R +GFG   +A  EDLDS +SA  L+ + +  R +RV+VA
Sbjct: 135 RLKGFG---YAEFEDLDSLLSALSLNEESLGNRRIRVDVA 171



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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISA--LDGQEMDGRPLRVNVA 339
           R +GFG   +A  EDLDS +SA  L+ + +  R +RV+VA
Sbjct: 135 RLKGFG---YAEFEDLDSLLSALSLNEESLGNRRIRVDVA 171



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>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 425 WASKEDLDSAISALDGQEMDGRPLRVNVA 339
           ++++ED   A+ AL+G+ +DG P+ V +A
Sbjct: 273 FSNREDAVEAMKALNGKVLDGSPIEVTLA 301



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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 452 RSRGFGL*LWASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 318
           RSRGFG   ++S  ++D+A++A     +DGR +    A  R + G
Sbjct: 48  RSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 91



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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +1

Query: 262 PCVHEKRQAMLSAAAPHQNPRCGLSAATFTRSGRPSISCPSSAEIALSRSSFEAHSYKPN 441
           P   + RQ  +SA    Q+   G +      + R     P+S  +A   S+   H   P 
Sbjct: 15  PMTLKPRQGSVSAGVVKQSFSHGRTKTVVVETKRTRTHAPASGNLAAPSSAERRHGEAPA 74

Query: 442 PRERP 456
           PR  P
Sbjct: 75  PRPAP 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,698,430
Number of Sequences: 219361
Number of extensions: 1376435
Number of successful extensions: 4204
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 3996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4203
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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