Clone Name | rbaet94h03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 aaaagggtgaactgagtccacc 276 |||||||||||||||||||||| Sbjct: 19537 aaaagggtgaactgagtccacc 19558
>emb|AL928971.12| Mouse DNA sequence from clone RP23-430K13 on chromosome 2, complete sequence Length = 59634 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 aaaagggtgaactgagtccacc 276 |||||||||||||||||||||| Sbjct: 55767 aaaagggtgaactgagtccacc 55788
>gb|DQ480147.1| Sus scrofa muscle 6-phosphofructokinase (PFMK) gene, exons 1 through 21 and partial cds Length = 14661 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 agcatgcccagcagcagcagc 87 ||||||||||||||||||||| Sbjct: 12508 agcatgcccagcagcagcagc 12528
>ref|XM_501102.1| Yarrowia lipolytica CLIB122, YALI0B19602g predicted mRNA Length = 1212 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 agcatgcccagcagcagcagc 87 ||||||||||||||||||||| Sbjct: 80 agcatgcccagcagcagcagc 100
>emb|CR853297.8| Zebrafish DNA sequence from clone DKEYP-118B3 in linkage group 15, complete sequence Length = 182283 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 caaaaataaaaatacataagc 376 ||||||||||||||||||||| Sbjct: 46762 caaaaataaaaatacataagc 46742
>emb|AL672026.11| Mouse DNA sequence from clone RP23-403O11 on chromosome X, complete sequence Length = 200566 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 gataaaaaacatgataaattaatga 25 |||||||||||| |||||||||||| Sbjct: 109372 gataaaaaacataataaattaatga 109348 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 gataaaaaacatgataaattaatga 25 |||||||||||| |||||||||||| Sbjct: 72146 gataaaaaacataataaattaatga 72170
>dbj|AK097934.1| Homo sapiens cDNA FLJ40615 fis, clone THYMU2012882 Length = 2170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 agcagcagcttgcagaaactg 99 ||||||||||||||||||||| Sbjct: 1195 agcagcagcttgcagaaactg 1175
>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence Length = 158203 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 agcagcagcttgcagaaactg 99 ||||||||||||||||||||| Sbjct: 14996 agcagcagcttgcagaaactg 14976
>emb|BX005141.5| Zebrafish DNA sequence from clone CH211-13K16, complete sequence Length = 166576 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 caaaaataaaaatacataagc 376 ||||||||||||||||||||| Sbjct: 132623 caaaaataaaaatacataagc 132643
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 agcatgcccagcagcagcagc 87 ||||||||||||||||||||| Sbjct: 2588915 agcatgcccagcagcagcagc 2588895
>ref|NM_116968.1| Arabidopsis thaliana DNA (cytosine-5-)-methyltransferase/ DNA binding AT4G08990 mRNA, complete cds Length = 4539 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agcagcagcttgcagaaact 98 |||||||||||||||||||| Sbjct: 81 agcagcagcttgcagaaact 100
>ref|NM_001030829.1| Gallus gallus nucleoporin like 1 (NUPL1), mRNA Length = 3813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 2173 ccaaaaataaaaatacataa 2154
>ref|XM_591161.2| PREDICTED: Bos taurus similar to Guanine nucleotide-binding protein G(z), alpha subunit (G(x) alpha chain) (Gz-alpha) (LOC540047), mRNA Length = 1002 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tgcccagcagcagcagcttg 90 |||||||||||||||||||| Sbjct: 121 tgcccagcagcagcagcttg 102
>gb|AC119181.11| Mus musculus chromosome 18, clone RP24-111I16, complete sequence Length = 195506 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 144239 ccaaaaataaaaatacataa 144258
>emb|CR376738.9| Zebrafish DNA sequence from clone DKEY-97H16 in linkage group 7, complete sequence Length = 118757 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 83999 ccaaaaataaaaatacataa 83980
>emb|AL831769.8| Human DNA sequence from clone RP11-343H22 on chromosome 10, complete sequence Length = 44151 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccagcagcagcagcttgcag 93 |||||||||||||||||||| Sbjct: 31275 ccagcagcagcagcttgcag 31294
>emb|AL592503.5| Human DNA sequence from clone RP11-267A5 on chromosome 13, complete sequence Length = 99970 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 tgcccagcagcagcagcttg 90 |||||||||||||||||||| Sbjct: 72746 tgcccagcagcagcagcttg 72727
>emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chromosome 10 Contains the 3' end of a novel gene, complete sequence Length = 197389 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ccagcagcagcagcttgcag 93 |||||||||||||||||||| Sbjct: 102188 ccagcagcagcagcttgcag 102207
>emb|AL138787.11| Human DNA sequence from clone RP4-665N4 on chromosome 1p34.1-35.3 Contains the 3' end of the EIF2C3 gene for eukaryotic translation initiation factor 2C, 3, a putative novel transcript, a implantation-associated protein (DKFZp564K142) processed pseudogene, the TEKT2 gene for tektin 2 (testicular), the COL8A2 gene for collagen, type VIII, alpha 2, complete sequence Length = 128133 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 gctgcccaaaaataaaaata 369 |||||||||||||||||||| Sbjct: 120997 gctgcccaaaaataaaaata 120978
>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence Length = 97685 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 ctgcccaaaaataaaaatacataa 374 ||||| |||||||||||||||||| Sbjct: 75947 ctgcctaaaaataaaaatacataa 75924
>emb|AL161513.2|ATCHRIV25 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 25 Length = 179771 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agcagcagcttgcagaaact 98 |||||||||||||||||||| Sbjct: 152000 agcagcagcttgcagaaact 152019
>emb|AJ720073.1| Gallus gallus mRNA for hypothetical protein, clone 10d12 Length = 3813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 2173 ccaaaaataaaaatacataa 2154
>emb|CR456683.7| Zebrafish DNA sequence from clone CH211-39I13 in linkage group 13, complete sequence Length = 166196 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gatttcacttgacaagagtg 350 |||||||||||||||||||| Sbjct: 39773 gatttcacttgacaagagtg 39754
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gtgctgcccaaaaataaaaa 367 |||||||||||||||||||| Sbjct: 2314318 gtgctgcccaaaaataaaaa 2314337
>gb|AC098801.2| Drosophila melanogaster 3L BAC RP98-12G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 acatgataaattaatgattg 28 |||||||||||||||||||| Sbjct: 113328 acatgataaattaatgattg 113347
>gb|AC091207.3| Drosophila melanogaster 3L BAC RP98-12P14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160504 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 acatgataaattaatgattg 28 |||||||||||||||||||| Sbjct: 19430 acatgataaattaatgattg 19449
>gb|AC078873.22| Homo sapiens 12q BAC RP11-916O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190073 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aaaaataaaaatacataagc 376 |||||||||||||||||||| Sbjct: 174653 aaaaataaaaatacataagc 174672
>ref|XM_631579.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0187988), partial mRNA Length = 822 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ataaaaaacatgataaatta 21 |||||||||||||||||||| Sbjct: 514 ataaaaaacatgataaatta 495
>gb|AC019105.7| Homo sapiens BAC clone RP11-475A8 from 2, complete sequence Length = 170491 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 caaaaataaaaatacataag 375 |||||||||||||||||||| Sbjct: 38747 caaaaataaaaatacataag 38766
>ref|XM_225457.3| PREDICTED: Rattus norvegicus enhancer of polycomb homolog 1 (Drosophila) (predicted) (Epc1_predicted), mRNA Length = 4071 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cagcagcagcagcttgcagaaact 98 |||||||||||||||||| ||||| Sbjct: 2095 cagcagcagcagcttgcacaaact 2118
>gb|AC012183.9| Homo sapiens chromosome 16 clone RP11-451N19, complete sequence Length = 220173 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aaaaataaaaatacataagc 376 |||||||||||||||||||| Sbjct: 91407 aaaaataaaaatacataagc 91426
>gb|AC007115.1|AC007115 Homo sapiens chromosome 12 clone 917O5, complete sequence Length = 180821 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaataaaaatacataagc 376 |||||||||||||||||||| Sbjct: 78501 aaaaataaaaatacataagc 78482
>ref|XM_563640.1| Anopheles gambiae str. PEST ENSANGP00000028685 (ENSANGG00000002471), partial mRNA Length = 5646 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gcatgcccagcagcagcagc 87 |||||||||||||||||||| Sbjct: 801 gcatgcccagcagcagcagc 820
>gb|AF128843.1|AF128843 Trypanosoma cruzi stage-specific surface glycoprotein gp82 (gp82) mRNA, partial cds Length = 2150 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 1916 ccaaaaataaaaatacataa 1897
>gb|AF105372.1|AF105372 Homo sapiens large-conductance calcium-activated potassium channel alpha subunit gene, partial cds Length = 2022 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 74 ccagcagcagcagcttgcagaaactgga 101 |||||||||||||| ||||||||||||| Sbjct: 1004 ccagcagcagcagc-tgcagaaactgga 978
>gb|AF128396.1|T3H13 Arabidopsis thaliana BAC T3H13 Length = 118737 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agcagcagcttgcagaaact 98 |||||||||||||||||||| Sbjct: 118292 agcagcagcttgcagaaact 118311
>gb|AE003567.4| Drosophila melanogaster chromosome 3L, section 18 of 83 of the complete sequence Length = 166593 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 acatgataaattaatgattg 28 |||||||||||||||||||| Sbjct: 126658 acatgataaattaatgattg 126677
>gb|AC116857.11| Mus musculus chromosome 18, clone RP24-403E17, complete sequence Length = 152500 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 151807 ccaaaaataaaaatacataa 151826
>gb|AC005359.1|AC005359 REVERSE-COMPLEMENT OF: F23J3.GCG.SEQ CHECK: 2754 FROM: 1 TO: 93489, complete sequence Length = 93489 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 agcagcagcttgcagaaact 98 |||||||||||||||||||| Sbjct: 17203 agcagcagcttgcagaaact 17222
>gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, complete sequence Length = 158774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ttgcacatctgaaactgtac 45 |||||||||||||||||||| Sbjct: 52143 ttgcacatctgaaactgtac 52162
>gb|L14824.1|TRB82KDSA Trypanosoma cruzi 82-kDa surface antigen mRNA, complete cds Length = 2140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccaaaaataaaaatacataa 374 |||||||||||||||||||| Sbjct: 1902 ccaaaaataaaaatacataa 1883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,683,365 Number of Sequences: 3902068 Number of extensions: 5683365 Number of successful extensions: 148466 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 148324 Number of HSP's gapped (non-prelim): 143 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)