Clone Information

BLAST Search Result

Clone Name	rbaet94h01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	141	2e-30
2	gb\|AC105363.2\| Oryza sativa (japonica cultivar-group) chromosome...	141	2e-30
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	2e-30
4	dbj\|AK103660.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	2e-30
5	dbj\|AK073847.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	2e-30
6	dbj\|AK060028.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	2e-30
7	ref\|NM_187572.1\| Oryza sativa (japonica cultivar-group), predic...	129	6e-27
8	tpe\|BN000562.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	129	6e-27
9	ref\|NM_197545.1\| Oryza sativa (japonica cultivar-group) putative...	92	1e-15
10	gb\|AC092697.6\| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno...	92	1e-15
11	gb\|AC074196.14\| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen...	92	1e-15
12	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	1e-15
13	dbj\|AK105708.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	92	1e-15
14	tpe\|BN000657.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	92	1e-15
15	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	92	1e-15
16	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	72	1e-09
17	dbj\|AP003630.3\| Oryza sativa (japonica cultivar-group) genomic D...	72	1e-09
18	gb\|AY108615.1\| Zea mays PCO132912 mRNA sequence	68	2e-08
19	ref\|XM_476366.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.073
20	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.073
21	dbj\|AP005187.5\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.073
22	dbj\|AP004673.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.073
23	tpe\|BN000623.1\| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr...	46	0.073
24	gb\|AC150401.3\| Branchiostoma floridae clone CH302-30M10, complet...	42	1.1
25	gb\|AC150425.2\| Branchiostoma floridae clone CH302-81E17, complet...	42	1.1
26	emb\|CR522870.1\| Desulfotalea psychrophila LSv54 chromosome	42	1.1
27	gb\|AE005895.1\| Caulobacter crescentus CB15 section 221 of 359 of...	42	1.1
28	gb\|AC094086.2\| Homo sapiens chromosome 5 clone CTD-2170G1, compl...	42	1.1
29	gb\|AC073540.4\| Homo sapiens chromosome 5 clone RP11-164A5, compl...	42	1.1
30	gb\|AC016645.5\| Homo sapiens chromosome 5 clone RP11-54A24, compl...	42	1.1
31	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	42	1.1
32	gb\|AC124817.2\| Branchiostoma floridae, clone -10F3, complete seq...	42	1.1
33	gb\|AC005690.8\|AC005690 Homo sapiens chromosome 4 clone C0483I23,...	42	1.1
34	emb\|AL831752.7\| Mouse DNA sequence from clone RP23-414J22 on chr...	42	1.1
35	ref\|XM_476596.1\| Oryza sativa (japonica cultivar-group), mRNA	40	4.5
36	gb\|AF357202.1\| Streptomyces nodosus amphotericin biosynthetic ge...	40	4.5
37	gb\|AC108824.17\| Mus musculus chromosome 7, clone RP23-81B14, com...	40	4.5
38	gb\|AC009449.7\| Homo sapiens chromosome 17, clone CTD-2291H15, co...	40	4.5
39	gb\|AC090229.15\| Homo sapiens chromosome 18, clone RP11-873E20, c...	40	4.5
40	gb\|AC144842.2\| Homo sapiens chromosome 17, clone XXfos-801612G12...	40	4.5
41	ref\|XM_793257.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	4.5
42	emb\|BX248356.1\| Corynebacterium diphtheriae gravis NCTC13129, co...	40	4.5
43	emb\|AL603917.5\| Mouse DNA sequence from clone RP23-107J13 on chr...	40	4.5
44	gb\|BC055422.1\| Homo sapiens cDNA clone IMAGE:5270387	40	4.5
45	gb\|AC090220.13\| Homo sapiens chromosome 18, clone RP11-712P20, c...	40	4.5
46	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
47	gb\|AC139026.4\| Homo sapiens chromosome 17, clone CTD-2514I13, co...	40	4.5
48	gb\|AC138645.3\| Homo sapiens chromosome 17, clone RP11-995C19, co...	40	4.5
49	gb\|AC138688.2\| Homo sapiens chromosome 17, clone RP11-300H14, co...	40	4.5
50	gb\|AC135972.11\| Homo sapiens chromosome 17, clone CTD-2530H17, c...	40	4.5
51	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	4.5
52	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	4.5
53	dbj\|AP005258.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
54	dbj\|AP004314.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
55	dbj\|AP004346.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
56	dbj\|AP003918.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
57	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	4.5
58	dbj\|AP003829.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.5
59	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	4.5
60	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	40	4.5
61	gb\|AC154313.2\| Mus musculus BAC clone RP23-354M21 from chromosom...	40	4.5

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                           
Query: 208     tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
               ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1152274 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1152333

                                                                           
Query: 268     acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
               |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 1152334 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 1152393

                          
Query: 328     ttggtggtgta 338
               ||| |||||||
Sbjct: 1152394 ttgttggtgta 1152404

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>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                         
Query: 208   tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
             ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 55978 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 56037

                                                                         
Query: 268   acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
             |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 56038 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 56097

                        
Query: 328   ttggtggtgta 338
             ||| |||||||
Sbjct: 56098 ttgttggtgta 56108

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                           
Query: 208     tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
               ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1152272 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1152331

                                                                           
Query: 268     acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
               |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 1152332 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 1152391

                          
Query: 328     ttggtggtgta 338
               ||| |||||||
Sbjct: 1152392 ttgttggtgta 1152402

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>dbj|AK103660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135H09, full
            insert sequence
          Length = 1506

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
            ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1166 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1107

                                                                        
Query: 268  acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
            |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 1106 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 1047

                       
Query: 328  ttggtggtgta 338
            ||| |||||||
Sbjct: 1046 ttgttggtgta 1036

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>dbj|AK073847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069F06, full
            insert sequence
          Length = 1491

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                        
Query: 208  tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
            ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1166 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 1107

                                                                        
Query: 268  acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
            |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 1106 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 1047

                       
Query: 328  ttggtggtgta 338
            ||| |||||||
Sbjct: 1046 ttgttggtgta 1036

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>dbj|AK060028.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F06, full
           insert sequence
          Length = 1147

 Score =  141 bits (71), Expect = 2e-30
 Identities = 116/131 (88%)
 Strand = Plus / Minus

                                                                       
Query: 208 tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgccggtgttgccggtgagc 267
           ||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 870 tcgatcgatcagctggccaccctgcagtttgtcctgatggtgccggcgttgccggtgagc 811

                                                                       
Query: 268 acgccgatggcgcccatggcgaccatggcgttggcgaagtcggtctggaaggtgccgggg 327
           |||||||||| ||||||   ||||||||||  |||||||||||||||||| | | | |||
Sbjct: 810 acgccgatggagcccatcttgaccatggcggcggcgaagtcggtctggaacgagtccggg 751

                      
Query: 328 ttggtggtgta 338
           ||| |||||||
Sbjct: 750 ttgttggtgta 740

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>ref|NM_187572.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 936

 Score =  129 bits (65), Expect = 6e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                       
Query: 226 accctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgcccatg 285
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| 
Sbjct: 926 accctgcagtttgtcctgatggtgccggcgttgccggtgagcacgccgatggagcccatc 867

                                                                
Query: 286 gcgaccatggcgttggcgaagtcggtctggaaggtgccggggttggtggtgta 338
             ||||||||||  |||||||||||||||||| | | | |||||| |||||||
Sbjct: 866 ttgaccatggcggcggcgaagtcggtctggaacgagtccgggttgttggtgta 814

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>tpe|BN000562.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx33 gene for
            class III peroxidase 33 precursor, exons 1-3
          Length = 3361

 Score =  129 bits (65), Expect = 6e-27
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                        
Query: 226  accctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgcccatg 285
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| 
Sbjct: 3351 accctgcagtttgtcctgatggtgccggcgttgccggtgagcacgccgatggagcccatc 3292

                                                                 
Query: 286  gcgaccatggcgttggcgaagtcggtctggaaggtgccggggttggtggtgta 338
              ||||||||||  |||||||||||||||||| | | | |||||| |||||||
Sbjct: 3291 ttgaccatggcggcggcgaagtcggtctggaacgagtccgggttgttggtgta 3239

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>ref|NM_197545.1| Oryza sativa (japonica cultivar-group) putative peroxidase
            (OSJNBa0040D23.2), mRNA
          Length = 1204

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
            ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 1063 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 1004

                                                  
Query: 284  tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
            |   ||||||||||  |||||||||| |||||||||||
Sbjct: 1003 tcttgaccatggcggcggcgaagtcgctctggaaggtg 966

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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 224   cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
             ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 98407 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 98348

                                                   
Query: 284   tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
             |   ||||||||||  |||||||||| |||||||||||
Sbjct: 98347 tcttgaccatggcggcggcgaagtcgctctggaaggtg 98310

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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                         
Query: 224   cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
             ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 23053 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 22994

                                                   
Query: 284   tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
             |   ||||||||||  |||||||||| |||||||||||
Sbjct: 22993 tcttgaccatggcggcggcgaagtcgctctggaaggtg 22956

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                            
Query: 224      cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
                ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 20382905 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 20382846

                                                      
Query: 284      tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
                |   ||||||||||  |||||||||| |||||||||||
Sbjct: 20382845 tcttgaccatggcggcggcgaagtcgctctggaaggtg 20382808

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>dbj|AK105708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E05, full
            insert sequence
          Length = 1422

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
            ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 1172 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 1113

                                                  
Query: 284  tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
            |   ||||||||||  |||||||||| |||||||||||
Sbjct: 1112 tcttgaccatggcggcggcgaagtcgctctggaaggtg 1075

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>tpe|BN000657.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx128 gene for
            class III peroxidase 128 precursor, exons 1-3
          Length = 1794

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 224  cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
            ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 1789 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 1730

                                                  
Query: 284  tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
            |   ||||||||||  |||||||||| |||||||||||
Sbjct: 1729 tcttgaccatggcggcggcgaagtcgctctggaaggtg 1692

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                            
Query: 224      cgaccctgcagtttgtcctgatggtgccggtgttgccggtgagcacgccgatggcgccca 283
                ||||||||||||||| |||||   ||||| || |||||||||||||||||| ||||||||
Sbjct: 20394177 cgaccctgcagtttgccctgaccttgccgctgctgccggtgagcacgccgacggcgccca 20394118

                                                      
Query: 284      tggcgaccatggcgttggcgaagtcggtctggaaggtg 321
                |   ||||||||||  |||||||||| |||||||||||
Sbjct: 20394117 tcttgaccatggcggcggcgaagtcgctctggaaggtg 20394080

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 71/83 (85%), Gaps = 6/83 (7%)
 Strand = Plus / Minus

                                                                            
Query: 208      tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgc------cggtgttgccg 261
                ||||||||||||| | | ||||||||||| |||||||||||||      ||| |||||||
Sbjct: 22362299 tcgatcgatcagctggccaccctgcagttggtcctgatggtgccgccggcggcgttgccg 22362240

                                       
Query: 262      gtgagcacgccgatggcgcccat 284
                |||||||||||||||| ||||||
Sbjct: 22362239 gtgagcacgccgatggagcccat 22362217

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>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0566A10
          Length = 174367

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 71/83 (85%), Gaps = 6/83 (7%)
 Strand = Plus / Minus

                                                                          
Query: 208    tcgatcgatcagccgacgaccctgcagtttgtcctgatggtgc------cggtgttgccg 261
              ||||||||||||| | | ||||||||||| |||||||||||||      ||| |||||||
Sbjct: 140722 tcgatcgatcagctggccaccctgcagttggtcctgatggtgccgccggcggcgttgccg 140663

                                     
Query: 262    gtgagcacgccgatggcgcccat 284
              |||||||||||||||| ||||||
Sbjct: 140662 gtgagcacgccgatggagcccat 140640

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>gb|AY108615.1| Zea mays PCO132912 mRNA sequence
          Length = 1231

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 248 tgccggtgttgccggtgagcacgccgatggcgcccatggcgaccatggcgttggcgaagt 307
           ||||| || |||||||||||||||||| || ||||||   ||||||||||  ||||||||
Sbjct: 940 tgccgctggtgccggtgagcacgccgacggagcccatcttgaccatggcggcggcgaagt 881

                         
Query: 308 cggtctggaaggtg 321
           ||| ||||||||||
Sbjct: 880 cggcctggaaggtg 867

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>ref|XM_476366.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 262 gtgagcacgccgatggcgcccat 284
           |||||||||||||||||||||||
Sbjct: 998 gtgagcacgccgatggcgcccat 976

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 262    gtgagcacgccgatggcgcccat 284
              |||||||||||||||||||||||
Sbjct: 252815 gtgagcacgccgatggcgcccat 252793



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 278      cgcccatggcgaccatggcg 297
                ||||||||||||||||||||
Sbjct: 11435054 cgcccatggcgaccatggcg 11435073



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     atggcgcccatggcgaccatggcg 297
               ||||||||||||||| ||||||||
Sbjct: 2099584 atggcgcccatggcggccatggcg 2099561

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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446F04
          Length = 175390

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 262   gtgagcacgccgatggcgcccat 284
             |||||||||||||||||||||||
Sbjct: 87679 gtgagcacgccgatggcgcccat 87657

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>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0617C02
          Length = 135605

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 262  gtgagcacgccgatggcgcccat 284
            |||||||||||||||||||||||
Sbjct: 4814 gtgagcacgccgatggcgcccat 4792

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>tpe|BN000623.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx94 gene for
           class III peroxidase 94 precursor, exon 1
          Length = 1050

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 262 gtgagcacgccgatggcgcccat 284
           |||||||||||||||||||||||
Sbjct: 998 gtgagcacgccgatggcgcccat 976

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>gb|AC150401.3| Branchiostoma floridae clone CH302-30M10, complete sequence
          Length = 138773

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 273  gatggcgcccatggcgaccatggcg 297
            ||||||| |||||||||||||||||
Sbjct: 1439 gatggcgaccatggcgaccatggcg 1463

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>gb|AC150425.2| Branchiostoma floridae clone CH302-81E17, complete sequence
          Length = 124426

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 273   gatggcgcccatggcgaccatggcg 297
             ||||||| |||||||||||||||||
Sbjct: 25674 gatggcgaccatggcgaccatggcg 25650

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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 287     cgaccatggcgttggcgaagtcggt 311
               |||||||||||||||||||| ||||
Sbjct: 2819165 cgaccatggcgttggcgaaggcggt 2819141

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>gb|AE005895.1| Caulobacter crescentus CB15 section 221 of 359 of the complete genome
          Length = 12430

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 279   gcccatggcgaccatggcgttggcg 303
             |||||||||||||||||||| ||||
Sbjct: 10891 gcccatggcgaccatggcgtaggcg 10867

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>gb|AC094086.2| Homo sapiens chromosome 5 clone CTD-2170G1, complete sequence
          Length = 100853

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    aagcagtgaaagaaagtacag 71
             |||||||||||||||||||||
Sbjct: 26317 aagcagtgaaagaaagtacag 26337

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>gb|AC073540.4| Homo sapiens chromosome 5 clone RP11-164A5, complete sequence
          Length = 12142

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 51   aagcagtgaaagaaagtacag 71
            |||||||||||||||||||||
Sbjct: 7317 aagcagtgaaagaaagtacag 7337

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>gb|AC016645.5| Homo sapiens chromosome 5 clone RP11-54A24, complete sequence
          Length = 10358

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 51   aagcagtgaaagaaagtacag 71
            |||||||||||||||||||||
Sbjct: 4687 aagcagtgaaagaaagtacag 4707

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 258     gccggtgagcacgccgatggc 278
               |||||||||||||||||||||
Sbjct: 1916246 gccggtgagcacgccgatggc 1916266

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>gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence
          Length = 133980

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 273   gatggcgcccatggcgaccatggcg 297
             ||||||| |||||||||||||||||
Sbjct: 91437 gatggcgaccatggcgaccatggcg 91461

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>gb|AC005690.8|AC005690 Homo sapiens chromosome 4 clone C0483I23, complete sequence
          Length = 193424

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     atgcaagatcaaggagaaaag 93
              |||||||||||||||||||||
Sbjct: 103968 atgcaagatcaaggagaaaag 103948

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>emb|AL831752.7| Mouse DNA sequence from clone RP23-414J22 on chromosome X, complete
             sequence
          Length = 169807

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 36    aggctaagggaacacaagcagtgaa 60
             |||||||||||||||||| ||||||
Sbjct: 87763 aggctaagggaacacaagtagtgaa 87787

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>ref|XM_476596.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 831

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 atggcgcccatggcgaccatggcg 297
           ||||||||||||||| ||||||||
Sbjct: 743 atggcgcccatggcggccatggcg 766

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>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete
            sequence
          Length = 113193

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  tgccggtgttgccggtgagc 267
            ||||||||||||||||||||
Sbjct: 5555 tgccggtgttgccggtgagc 5536

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>gb|AC108824.17| Mus musculus chromosome 7, clone RP23-81B14, complete sequence
          Length = 182109

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    catacagaggctaagggaacacaa 52
             ||||||||||||||| ||||||||
Sbjct: 64431 catacagaggctaagagaacacaa 64408

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>gb|AC009449.7| Homo sapiens chromosome 17, clone CTD-2291H15, complete sequence
          Length = 103577

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aacacaagcagtgaaagaaa 65
             ||||||||||||||||||||
Sbjct: 83542 aacacaagcagtgaaagaaa 83561

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>gb|AC090229.15| Homo sapiens chromosome 18, clone RP11-873E20, complete sequence
          Length = 192106

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    agataatacatacagaggct 40
             ||||||||||||||||||||
Sbjct: 27126 agataatacatacagaggct 27107

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>gb|AC144842.2| Homo sapiens chromosome 17, clone XXfos-801612G12, complete sequence
          Length = 40479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aacacaagcagtgaaagaaa 65
             ||||||||||||||||||||
Sbjct: 26247 aacacaagcagtgaaagaaa 26228

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>ref|XM_793257.1| PREDICTED: Strongylocentrotus purpuratus similar to dynein,
           cytoplasmic, heavy chain 1 (LOC593792), partial mRNA
          Length = 2997

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 76  caagatcaaggagaaaagagagag 99
           ||||||| ||||||||||||||||
Sbjct: 849 caagatccaggagaaaagagagag 872

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>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              3/8
          Length = 347625

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    tggtgccggtgttgccggtg 264
              ||||||||||||||||||||
Sbjct: 336124 tggtgccggtgttgccggtg 336143

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>emb|AL603917.5| Mouse DNA sequence from clone RP23-107J13 on chromosome 11 Contains a
             novel gene, a glyoxalase 1 (Glo1) pseudogene and a
             pseudogene similar to part of nuclear pore membrane
             protein 121 Pom121, complete sequence
          Length = 212255

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    agtatgcaagatcaaggaga 89
             ||||||||||||||||||||
Sbjct: 13951 agtatgcaagatcaaggaga 13932

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>gb|BC055422.1| Homo sapiens cDNA clone IMAGE:5270387
          Length = 5069

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   aacacaagcagtgaaagaaa 65
            ||||||||||||||||||||
Sbjct: 3246 aacacaagcagtgaaagaaa 3265

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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     agataatacatacagaggct 40
              ||||||||||||||||||||
Sbjct: 180253 agataatacatacagaggct 180234

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 277      gcgcccatggcgaccatggc 296
                ||||||||||||||||||||
Sbjct: 11837468 gcgcccatggcgaccatggc 11837449

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>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence
          Length = 226696

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aacacaagcagtgaaagaaa 65
             ||||||||||||||||||||
Sbjct: 97011 aacacaagcagtgaaagaaa 96992

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>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence
          Length = 200420

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aacacaagcagtgaaagaaa 65
              ||||||||||||||||||||
Sbjct: 151295 aacacaagcagtgaaagaaa 151314

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>gb|AC138688.2| Homo sapiens chromosome 17, clone RP11-300H14, complete sequence
          Length = 183093

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aacacaagcagtgaaagaaa 65
              ||||||||||||||||||||
Sbjct: 166494 aacacaagcagtgaaagaaa 166513

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>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence
          Length = 158617

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aacacaagcagtgaaagaaa 65
             ||||||||||||||||||||
Sbjct: 45026 aacacaagcagtgaaagaaa 45045

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     gccggtgagcacgccgatgg 277
               ||||||||||||||||||||
Sbjct: 2239243 gccggtgagcacgccgatgg 2239262

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 243     gatggtgccggtgttgccggtgagcacg 270
               ||||||||||||| || |||||||||||
Sbjct: 6048191 gatggtgccggtgatgacggtgagcacg 6048218

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>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446G09
          Length = 146898

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   cgcccatggcgaccatggcg 297
             ||||||||||||||||||||
Sbjct: 44574 cgcccatggcgaccatggcg 44593

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>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0495H05
          Length = 205595

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 274    atggcgcccatggcgaccatggcg 297
              ||||||||||||||| ||||||||
Sbjct: 183881 atggcgcccatggcggccatggcg 183858

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>dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0656C04
          Length = 143411

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    cgcccatggcgaccatggcg 297
              ||||||||||||||||||||
Sbjct: 135565 cgcccatggcgaccatggcg 135584

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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gcgcccatggcgaccatggc 296
              ||||||||||||||||||||
Sbjct: 115753 gcgcccatggcgaccatggc 115734

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgcccatggcgaccatggcg 297
               ||||||||||||||||||||
Sbjct: 2382591 cgcccatggcgaccatggcg 2382610

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>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1417_E01
          Length = 118058

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   atggcgcccatggcgaccatggcg 297
             ||||||||||||||| ||||||||
Sbjct: 55377 atggcgcccatggcggccatggcg 55354

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     gatggtgccggtgttgccggtgag 266
               |||| |||||||||||||||||||
Sbjct: 2281471 gatgttgccggtgttgccggtgag 2281494

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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    tgatggtgccggtgttgccg 261
              ||||||||||||||||||||
Sbjct: 693720 tgatggtgccggtgttgccg 693701

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>gb|AC154313.2| Mus musculus BAC clone RP23-354M21 from chromosome 12, complete sequence
          Length = 220909

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     catacagaggctaagggaacacaa 52
              ||||||||||||||| ||||||||
Sbjct: 115561 catacagaggctaagagaacacaa 115538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,592,670
Number of Sequences: 3902068
Number of extensions: 2592670
Number of successful extensions: 63815
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63272
Number of HSP's gapped (non-prelim): 540
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result