ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet94g12 |
|---|---|
| Clone Library Name | barley_pub |
>SPY4_HUMAN (Q9C004) Sprouty homolog 4 (Spry-4)| Length = 299 Score = 37.0 bits (84), Expect = 0.013 Identities = 26/96 (27%), Positives = 41/96 (42%) Frame = +3 Query: 18 THFIPNDHVQHLCTVATGR*RRMHAESPEWAGSGSRVDVDVELQQVGADGLPQHVAFRHT 197 T + ND++ + T +R +PE A + +R D DV + G P V+ + Sbjct: 45 TSHVENDYIDNPSLALTTGPKRTRGGAPELAPTPARCDQDVTHHWISFSGRPSSVS---S 101 Query: 198 ELPRAADHRQLTHRHAGVVAPHHGHRAPRVGPRREH 305 ++D R L H VA RA R+ P+ H Sbjct: 102 SSSTSSDQRLLDHMAPPPVADQASPRAVRIQPKVVH 137
>DR206_PEA (P13240) Disease resistance response protein 206| Length = 184 Score = 31.6 bits (70), Expect = 0.53 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 296 SGTYAGSSVTVMGRDDTGVAVRELPVVGGTGQFRMAKGYVLWKTVRPDLLELDIY 132 + T+ ++T G D R++ V GGTG F M +G T+ D E + Y Sbjct: 120 NSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHRGIA---TITTDAFEGEAY 171
>SCNNA_CAVPO (Q9R1N2) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 682 Score = 31.6 bits (70), Expect = 0.53 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 220 WSAARGSSVWRKATCCGRPSAPT--CWSSTSTSTREPLPAHSGDSAC 86 WS RG+ R+ C PS P+ C S + P PA++ SAC Sbjct: 617 WSPGRGARAAREVACTPPPSLPSRFCAHSAFPTLTAPPPAYATLSAC 663
>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6| Length = 880 Score = 31.2 bits (69), Expect = 0.69 Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Frame = +3 Query: 168 LPQHVAFR--HTELPRAADHRQLTHRHAGVVAPHHGHRAPRVGPRREHH 308 LP H H EL AA H H HA H H R G EHH Sbjct: 603 LPSHHQLHATHHELSAAAAHHAHAHAHAA-----HAHALARAGSPMEHH 646
>VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains: Lipovitellin LV-1N;| Lipovitellin LV-1C; Lipovitellin LV-2] Length = 1823 Score = 30.8 bits (68), Expect = 0.90 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 210 AADHRQLTHRHAGVVAPHHGHRAPRVGPR 296 ++D + H+H G H GH AP +GP+ Sbjct: 1188 SSDSSKSPHKHGGAKRQHAGHGAPHLGPQ 1216
>CDN1B_CANFA (Q6SLL5) Cyclin-dependent kinase inhibitor 1B (Cyclin-dependent| kinase inhibitor p27) (p27Kip1) Length = 198 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -1 Query: 198 PYGERLRAVEDRPPRPAGARHLRQPVSHCLPTRAIQRACV 79 P ER A + P+P+ R+L PV+H TR +++ C+ Sbjct: 11 PTSERRDAKQAEYPKPSACRNLFGPVNHEELTRDLEKHCI 50
>KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome protein) (Adhesion| molecule-like X-linked) Length = 680 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +3 Query: 132 VDVELQQVGADGLPQHVAFRHTELPRAADHR-QLTHRHAGVVAPHHGHRAP 281 ++V++ G +G FR ELP ++ HR L HRH PHH +P Sbjct: 632 LEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRH-----PHHYKPSP 677
>ISPDF_RHILO (Q98MX9) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 407 Score = 29.6 bits (65), Expect = 2.0 Identities = 32/104 (30%), Positives = 39/104 (37%), Gaps = 11/104 (10%) Frame = +3 Query: 24 FIPNDHVQHLCTVATGR*RRMHAESPEWAGSGSRVDVDVELQQVGADGLPQHVAFRHTEL 203 F P DHV LC VA +++ S A G D L GA + H + Sbjct: 257 FEPGDHVT-LCGVAIPHDKKLSGHSD--ADVGLHALTDALLATCGAGDIGTHFPPSDPQW 313 Query: 204 PRAADHRQLTHRHAGVVAPHHGHR-----------APRVGPRRE 302 AA ++ HA V G R APRVGP RE Sbjct: 314 KGAAS--RIFVEHAAKVVRQRGGRIANADITLICEAPRVGPHRE 355
>WC11_BOVIN (P30205) Antigen WC1.1 precursor| Length = 1436 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/58 (27%), Positives = 23/58 (39%) Frame = -3 Query: 250 TPAWRCVSCRWSAARGSSVWRKATCCGRPSAPTCWSSTSTSTREPLPAHSGDSACMRR 77 T W+C S W + S C +C ++ + + RE L GDS C R Sbjct: 1110 TSLWQCPSGPWKYSSCSPKEEAYISCEGRRPKSCPTAAACTDREKLRLRGGDSECSGR 1167
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 28.9 bits (63), Expect = 3.4 Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 29/98 (29%) Frame = -3 Query: 253 TTPAWRCVSC----------RW-----SAARGSSVWRKATC--------------CGRPS 161 T P W C SC +W S A G S WR C CG+ Sbjct: 352 TAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTFSCFCGKVK 411 Query: 160 APTCWSSTSTSTREPLPAHSGDSACMRRQRPVATVHKC 47 P WS R +P HS C ++Q H C Sbjct: 412 NPE-WS------RNEIP-HSCGEVCRKKQPGQDCPHSC 441
>BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 494 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +3 Query: 216 DHRQLTHRHAGVVAPHHGHRAPRVGPRR--EHH 308 DH Q+ H H + HH H+ P G +R +HH Sbjct: 277 DHHQVQHHHHPSIPAHHQHQLPE-GQQRDVQHH 308
>CDN1B_CRIGR (Q60439) Cyclin-dependent kinase inhibitor 1B (Cyclin-dependent| kinase inhibitor p27) (p27Kip1) Length = 198 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 198 PYGERLRAVEDRPPRPAGARHLRQPVSHCLPTRAIQRAC 82 P ER+ A + P+P+ R+L PV+H TR +++ C Sbjct: 11 PSLERMDARQAEHPKPSACRNLFGPVNHEELTRDLEKHC 49
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +3 Query: 207 RAADHRQLTHRHAGVVAPHHGHRAPRVGPRREHH 308 R +Q H H HH H+AP P + HH Sbjct: 54 RTLAQKQHEHHHHHHHHHHHQHQAPHQAPHQAHH 87
>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 184 PFAIRNCPVPPTTGSSRTATPVSSRPITVTE 276 P A+ CP+PPTTG P R + +TE Sbjct: 2307 PPAVHGCPLPPTTGPP-IPPPRKKRTVVLTE 2336
>XKDB_BACSU (P39781) Phage-like element PBSX protein xkdB| Length = 277 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 96 SPEWAGSGSRVDVDVELQQVGADGLPQHVAFRHTELPRAADHR 224 SP+ + R D+D + AD H+A R T+L A + R Sbjct: 124 SPQTPDTNDRTDIDKTNKYTAADDAVDHIAKRFTQLRSAQEGR 166
>SYI_AERPE (Q9YF67) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1064 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -3 Query: 262 WGATTPAWRCVSCRWSAARGS 200 WG P WRC SC + GS Sbjct: 467 WGIPLPVWRCSSCGYEHVVGS 487
>SGF3_BOMMO (Q17237) Silk gland factor 3 (SGF-3) (POU domain protein M1)| Length = 351 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%) Frame = +3 Query: 204 PRAADHRQLTHR----HAGVVAPHHGHRAP 281 P DHR L H HA VV+PH+G P Sbjct: 82 PAPHDHRHLQHAAHGWHAPVVSPHYGAARP 111
>CDN1B_HUMAN (P46527) Cyclin-dependent kinase inhibitor 1B (Cyclin-dependent| kinase inhibitor p27) (p27Kip1) Length = 198 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 198 PYGERLRAVEDRPPRPAGARHLRQPVSHCLPTRAIQRAC 82 P ER+ A + P+P+ R+L PV H TR +++ C Sbjct: 11 PSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHC 49
>CDN1B_FELCA (O19001) Cyclin-dependent kinase inhibitor 1B (Cyclin-dependent| kinase inhibitor p27) (p27Kip1) Length = 198 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 198 PYGERLRAVEDRPPRPAGARHLRQPVSHCLPTRAIQRAC 82 P ER+ A + P+P+ R+L PV+H TR +++ C Sbjct: 11 PSLERMDARQAEYPKPSACRNLFGPVNHEELTRDLEKHC 49
>KRA95_HUMAN (Q9BYQ1) Keratin-associated protein 9-5 (Keratin-associated protein| 9.5) (Ultrahigh sulfur keratin-associated protein 9.5) (Fragment) Length = 111 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/62 (27%), Positives = 23/62 (37%) Frame = -3 Query: 229 SCRWSAARGSSVWRKATCCGRPSAPTCWSSTSTSTREPLPAHSGDSACMRRQRPVATVHK 50 SC + GSS + ++C TC+ T+ L G S C RP Sbjct: 31 SCCGQTSCGSSCGQSSSCAPVYCRRTCYYPTTVCLPGCLNQSCGSSCCQPCCRPACCETT 90 Query: 49 CC 44 CC Sbjct: 91 CC 92
>VTDB_RABIT (P53789) Vitamin D-binding protein precursor (DBP) (Group-specific| component) (Gc-globulin) (VDB) Length = 476 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%) Frame = -3 Query: 178 CCGRPSAPTCW-------SSTSTSTREPLPAHSGDSACMRRQ 74 CC + P C+ S+TS + P P H G + C ++ Sbjct: 74 CCTEDADPGCYDNRTSALSATSCESDSPFPVHPGTAECCTKE 115
>KRA99_HUMAN (Q9BYP9) Keratin-associated protein 9-9 (Keratin-associated protein| 9.9) (Ultrahigh sulfur keratin-associated protein 9.9) Length = 154 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/62 (27%), Positives = 23/62 (37%) Frame = -3 Query: 229 SCRWSAARGSSVWRKATCCGRPSAPTCWSSTSTSTREPLPAHSGDSACMRRQRPVATVHK 50 SC + GSS + ++C TC+ T+ L G S C RP Sbjct: 74 SCCGQTSCGSSCGQSSSCAPVYCRRTCYYPTTVCLPGCLNQSCGSSCCQPCCRPACCETT 133 Query: 49 CC 44 CC Sbjct: 134 CC 135
>KRA92_HUMAN (Q9BYQ4) Keratin-associated protein 9-2 (Keratin-associated protein| 9.2) (Ultrahigh sulfur keratin-associated protein 9.2) Length = 174 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Frame = -3 Query: 187 KATCCGRPSAPTCWSSTSTSTREPL----PAHSGDSACMRRQRPVATVHKCC 44 + TCC TCW T+ +T PA S C RP + + CC Sbjct: 15 RTTCC----RTTCWKPTTVTTCSSTSCCQPACCVSSCCQPCCRPTSCQNTCC 62
>CDN1B_MOUSE (P46414) Cyclin-dependent kinase inhibitor 1B (Cyclin-dependent| kinase inhibitor p27) (p27Kip1) Length = 197 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 198 PYGERLRAVEDRPPRPAGARHLRQPVSHCLPTRAIQRAC 82 P ER+ A + P+P+ R+L PV+H TR +++ C Sbjct: 11 PSLERMDARQADHPKPSACRNLFGPVNHEELTRDLEKHC 49
>Y1764_SYNY3 (P73042) Hypothetical protein slr1764| Length = 179 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -2 Query: 299 TSGTYAGSSVTVMGRDDTGVAVRELPVVGGTGQFRMAKGYVL 174 T+ A S+T G +TG+ V +L VGG+ +F Y++ Sbjct: 125 TNTALASYSITEDGGQNTGIIVAKLKDVGGSYEFTALGEYIV 166
>GATA2_ARATH (O49741) GATA transcription factor 2 (AtGATA-2)| Length = 264 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 171 PQHVAFRHTELPRAADHRQLTH 236 PQ+ +F H LP +ADH H Sbjct: 46 PQNPSFHHHHLPSSADHHSFLH 67
>LEUD2_MANSM (Q65V08) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 200 Score = 27.7 bits (60), Expect = 7.7 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3 Query: 105 WAGSGSRVDVDVELQQVGADGLPQHV---AFRHTELPRAADHRQLTHRHAGVVAPH 263 WA G ++DVD+E + V H FR L D+ LT +H +A + Sbjct: 136 WANPGKKIDVDLEAKTVTVGEKVYHFDLDEFRRHCLLEGLDNIGLTLQHEDAIAAY 191
>CIN8_ASHGO (Q8J1G7) Kinesin-like protein CIN8| Length = 945 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/26 (61%), Positives = 17/26 (65%) Frame = -3 Query: 145 SSTSTSTREPLPAHSGDSACMRRQRP 68 SS S S REP AH+G S RRQRP Sbjct: 203 SSQSNSPREPEVAHNGFS--RRRQRP 226
>ZADH2_HUMAN (Q8N4Q0) Zinc-binding alcohol dehydrogenase domain-containing| protein 2 (EC 1.-.-.-) Length = 377 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 305 VLTSGTYAGSSVTVMGRDDTGVAVRELPVVGGTGQFRM 192 +L SGT A S+ +G G V GGTGQF M Sbjct: 153 LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAM 190
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 27.3 bits (59), Expect = 10.0 Identities = 22/73 (30%), Positives = 28/73 (38%) Frame = +3 Query: 90 AESPEWAGSGSRVDVDVELQQVGADGLPQHVAFRHTELPRAADHRQLTHRHAGVVAPHHG 269 A S +G GS ++ + LP H E P A H+Q H H A HH Sbjct: 47 ASSSSSSGPGSAMETGL---------LPNHKLKTVGEAPAAPPHQQHHHHHH---AHHHH 94 Query: 270 HRAPRVGPRREHH 308 H A + HH Sbjct: 95 HHAHHL---HHHH 104
>ZITB_YERPS (Q66D85) Zinc transporter zitB| Length = 312 Score = 27.3 bits (59), Expect = 10.0 Identities = 26/98 (26%), Positives = 37/98 (37%) Frame = +3 Query: 15 NTHFIPNDHVQHLCTVATGR*RRMHAESPEWAGSGSRVDVDVELQQVGADGLPQHVAFRH 194 N + + N H HL V R +HA+ +D D LQ++ D L H H Sbjct: 227 NIYEVRNIHHVHLWQVGEQRLMTLHAQVIP------PLDHDALLQRI-QDYLLHHYRISH 279 Query: 195 TELPRAADHRQLTHRHAGVVAPHHGHRAPRVGPRREHH 308 + Q+ ++H G AP G R HH Sbjct: 280 ATV-------QMEYQHCGTPDCGINQAAPADGHHRHHH 310
>ZITB_YERPE (Q8ZGY6) Zinc transporter zitB| Length = 312 Score = 27.3 bits (59), Expect = 10.0 Identities = 26/98 (26%), Positives = 37/98 (37%) Frame = +3 Query: 15 NTHFIPNDHVQHLCTVATGR*RRMHAESPEWAGSGSRVDVDVELQQVGADGLPQHVAFRH 194 N + + N H HL V R +HA+ +D D LQ++ D L H H Sbjct: 227 NIYEVRNIHHVHLWQVGEQRLMTLHAQVIP------PLDHDALLQRI-QDYLLHHYRISH 279 Query: 195 TELPRAADHRQLTHRHAGVVAPHHGHRAPRVGPRREHH 308 + Q+ ++H G AP G R HH Sbjct: 280 ATV-------QMEYQHCGTPDCGINQAAPADGHHRHHH 310
>VTDB_HUMAN (P02774) Vitamin D-binding protein precursor (DBP) (Group-specific| component) (Gc-globulin) (VDB) Length = 474 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 7/42 (16%) Frame = -3 Query: 178 CCGRPSAPTCW-------SSTSTSTREPLPAHSGDSACMRRQ 74 CC + P C+ S+ S + P P H G + C ++ Sbjct: 74 CCAEGADPDCYDTRTSALSAKSCESNSPFPVHPGTAECCTKE 115
>SYI2_PSEFL (Q8L1B1) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Isoleucine--tRNA| ligase 2) (IleRS 2) (IleRS-R2) Length = 1029 Score = 27.3 bits (59), Expect = 10.0 Identities = 10/21 (47%), Positives = 10/21 (47%) Frame = -3 Query: 262 WGATTPAWRCVSCRWSAARGS 200 WGA P WRC C GS Sbjct: 451 WGAPIPVWRCDQCGTVEVMGS 471
>KRA98_HUMAN (Q9BYQ0) Keratin-associated protein 9-8 (Keratin-associated protein| 9.8) (Ultrahigh sulfur keratin-associated protein 9.8) Length = 159 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/62 (25%), Positives = 23/62 (37%) Frame = -3 Query: 229 SCRWSAARGSSVWRKATCCGRPSAPTCWSSTSTSTREPLPAHSGDSACMRRQRPVATVHK 50 +C + GSS + ++C TC+ T+ L G S C RP Sbjct: 79 TCCGQTSCGSSCGQSSSCAPVYCRRTCYHPTTVCLPGCLNQSCGSSCCQPCCRPACCETT 138 Query: 49 CC 44 CC Sbjct: 139 CC 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,128,043 Number of Sequences: 219361 Number of extensions: 891046 Number of successful extensions: 3428 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3417 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
