ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 168 7e-39
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 168 7e-39
3dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 7e-39
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 168 7e-39
5dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 6e-30
6emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin... 72 1e-09
7dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 7e-08
8dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 7e-08
9ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative... 44 0.26
10ref|NM_196355.1| Oryza sativa (japonica cultivar-group) putative... 44 0.26
11gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
12gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 44 0.26
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
15dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.26
16dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
17dbj|AK108922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
19ref|NM_186143.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
20ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.0
21gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
22emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gen... 42 1.0
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
24dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
25dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
26dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
27dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
28dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
29dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
30emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 42 1.0
31emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 42 1.0
32gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 4.1
33ref|XM_430279.1| PREDICTED: Gallus gallus hypothetical gene supp... 40 4.1
34emb|CR390716.1| Gallus gallus finished cDNA, clone ChEST596h18 40 4.1
35dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 4.1

>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score =  168 bits (85), Expect = 7e-39
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                         
Query: 122   acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181
             ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 83581 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 83640

                                                                         
Query: 182   agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241
             | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 83641 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 83700

                                                  
Query: 242   cgccggtgtcgtcgcgccccatcacggtcaccgagct 278
             ||||||||||||||||||| |  ||||||||||||||
Sbjct: 83701 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 83737



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 126/157 (80%)
 Strand = Plus / Plus

                                                                         
Query: 152   ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211
             ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 59932 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 59991

                                                                         
Query: 212   cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271
             |||||||||||| |||||| | ||||| | |  || ||||||| | ||| |  ||||| |
Sbjct: 59992 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 60051

                                                  
Query: 272   ccgagctccccgcgtaggtccccgacgtgagcaccac 308
             ||||||| || ||| | | ||||||||| ||||||||
Sbjct: 60052 ccgagctgccggcgaacggccccgacgtcagcaccac 60088



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 119   ctcacgggttgacgtagatgtcgagctc 146
             |||| ||||||||||||| |||||||||
Sbjct: 59887 ctcaggggttgacgtagacgtcgagctc 59914



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  168 bits (85), Expect = 7e-39
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                            
Query: 122      acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181
                ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 24738907 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 24738848

                                                                            
Query: 182      agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241
                | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 24738847 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 24738788

                                                     
Query: 242      cgccggtgtcgtcgcgccccatcacggtcaccgagct 278
                ||||||||||||||||||| |  ||||||||||||||
Sbjct: 24738787 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 24738751



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                            
Query: 152      ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211
                ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 24762556 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 24762497

                                                                            
Query: 212      cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271
                |||||||||||| |||||| | ||||| | |  || ||||||| | ||| |  ||||| |
Sbjct: 24762496 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 24762437

                                                     
Query: 272      ccgagctccccgcgtaggtccccgacgtgagcaccac 308
                ||||||| || ||| | | ||||||||| ||||||||
Sbjct: 24762436 ccgagctgccggcgaacggccccgacgtcagcaccac 24762400



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     gccgccgaccaccggcagctc 230
               |||||||||||||||||||||
Sbjct: 5919207 gccgccgaccaccggcagctc 5919187



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 119      ctcacgggttgacgtagatgtcgagctc 146
                |||| ||||||||||||| |||||||||
Sbjct: 24762601 ctcaggggttgacgtagacgtcgagctc 24762574



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>dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E08, full
           insert sequence
          Length = 766

 Score =  168 bits (85), Expect = 7e-39
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                       
Query: 122 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181
           ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 512 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 453

                                                                       
Query: 182 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241
           | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 452 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 393

                                                
Query: 242 cgccggtgtcgtcgcgccccatcacggtcaccgagct 278
           ||||||||||||||||||| |  ||||||||||||||
Sbjct: 392 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 356



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  168 bits (85), Expect = 7e-39
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                            
Query: 122      acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181
                ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 25050577 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 25050518

                                                                            
Query: 182      agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241
                | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 25050517 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 25050458

                                                     
Query: 242      cgccggtgtcgtcgcgccccatcacggtcaccgagct 278
                ||||||||||||||||||| |  ||||||||||||||
Sbjct: 25050457 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 25050421



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                            
Query: 152      ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211
                ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 25074226 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 25074167

                                                                            
Query: 212      cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271
                |||||||||||| |||||| | ||||| | |  || ||||||| | ||| |  ||||| |
Sbjct: 25074166 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 25074107

                                                     
Query: 272      ccgagctccccgcgtaggtccccgacgtgagcaccac 308
                ||||||| || ||| | | ||||||||| ||||||||
Sbjct: 25074106 ccgagctgccggcgaacggccccgacgtcagcaccac 25074070



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 210     gccgccgaccaccggcagctc 230
               |||||||||||||||||||||
Sbjct: 5985684 gccgccgaccaccggcagctc 5985664



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 119      ctcacgggttgacgtagatgtcgagctc 146
                |||| ||||||||||||| |||||||||
Sbjct: 25074271 ctcaggggttgacgtagacgtcgagctc 25074244



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>dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D07, full
           insert sequence
          Length = 839

 Score =  139 bits (70), Expect = 6e-30
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                       
Query: 149 gcaggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccg 208
           ||||||| ||||||| |||| ||||||||||||| ||| ||||||| | |||||||||||
Sbjct: 1   gcaggtcagggcggatggtcctccacagcacgtaccctctcgccatcctgaactgccccg 60

                                                                       
Query: 209 tgccgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacgg 268
           |||| || ||||||| |||||| ||||||||| ||||||||||||||||||| |  ||||
Sbjct: 61  tgccccccaccaccgtcagctcccgcaccgccgcgccggtgtcgtcgcgcccgacgacgg 120

                     
Query: 269 tcaccgagct 278
           ||||||||||
Sbjct: 121 tcaccgagct 130



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>emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin, clone 4B10T7
          Length = 336

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 160 cggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgcc 215
           ||||||||||||||||||||||| ||| | ||||| | ||||||||||||||||||
Sbjct: 90  cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgcc 145



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>dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049N05, full
           insert sequence
          Length = 836

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                       
Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211
           ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 487 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 428

                                                                       
Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271
           |||||||||||| |||||| | ||||| | |  || ||||||| | ||| |  ||||| |
Sbjct: 427 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 368

                                                
Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308
           ||||||| || ||| | | ||||||||| ||||||||
Sbjct: 367 ccgagctgccggcgaacggccccgacgtcagcaccac 331



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 119 ctcacgggttgacgtagatgtcgagctc 146
           |||| ||||||||||||| |||||||||
Sbjct: 532 ctcaggggttgacgtagacgtcgagctc 505



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>dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D09, full
           insert sequence
          Length = 786

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 126/157 (80%)
 Strand = Plus / Minus

                                                                       
Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211
           ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 496 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 437

                                                                       
Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271
           |||||||||||| |||||| | ||||| | |  || ||||||| | ||| |  ||||| |
Sbjct: 436 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 377

                                                
Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308
           ||||||| || ||| | | ||||||||| ||||||||
Sbjct: 376 ccgagctgccggcgaacggccccgacgtcagcaccac 340



 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 119 ctcacgggttgacgtagatgtcgagctc 146
           |||| ||||||||||||| |||||||||
Sbjct: 541 ctcaggggttgacgtagacgtcgagctc 514



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>ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OSJNBb0058B20.4), mRNA
          Length = 486

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 205 cccgtgccgccgaccaccggcagctc 230
           ||||||||||||||||||||| ||||
Sbjct: 442 cccgtgccgccgaccaccggccgctc 417



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>ref|NM_196355.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           response protein (OSJNBb0058B20.9), mRNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230
           |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 471 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 430



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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0050N08, complete sequence
          Length = 144593

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 205  cccgtgccgccgaccaccggcagctc 230
            ||||||||||||||||||||| ||||
Sbjct: 6776 cccgtgccgccgaccaccggccgctc 6801



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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 189   cgccatacggaactgccccgtgccgccgaccaccggcagctc 230
             |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 33234 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 33193



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 205   cccgtgccgccgaccaccggcagctc 230
             ||||||||||||||||||||| ||||
Sbjct: 12990 cccgtgccgccgaccaccggccgctc 12965



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 205      cccgtgccgccgaccaccggcagctc 230
                ||||||||||||||||||||| ||||
Sbjct: 12907860 cccgtgccgccgaccaccggccgctc 12907885



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 189      cgccatacggaactgccccgtgccgccgaccaccggcagctc 230
                |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 12887616 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12887657



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 227      gctcacgcaccgccacgccggt 248
                ||||||||||||||||||||||
Sbjct: 19684452 gctcacgcaccgccacgccggt 19684473



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 203     gccccgtgccgccgaccaccggcagc 228
               |||||| |||||||||||||||||||
Sbjct: 4697970 gccccgcgccgccgaccaccggcagc 4697945



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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1136H02
          Length = 145086

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 227   gctcacgcaccgccacgccggt 248
             ||||||||||||||||||||||
Sbjct: 41210 gctcacgcaccgccacgccggt 41231



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>dbj|AK108922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H09, full
           insert sequence
          Length = 785

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230
           |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 574 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 533



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 205      cccgtgccgccgaccaccggcagctc 230
                ||||||||||||||||||||| ||||
Sbjct: 12915200 cccgtgccgccgaccaccggccgctc 12915225



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 189      cgccatacggaactgccccgtgccgccgaccaccggcagctc 230
                |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 12894956 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12894997



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>ref|NM_186143.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 663

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 170 tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218
           ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 526 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 478



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>ref|NM_186138.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 958

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438

                
Query: 226 agctc 230
           |||||
Sbjct: 437 agctc 433



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>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04,
              complete sequence
          Length = 164882

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    gccgccgaccaccggcagctc 230
              |||||||||||||||||||||
Sbjct: 129091 gccgccgaccaccggcagctc 129071



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>emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gene and ORF2, ORF3 and ORF4
          Length = 5966

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  ccgtgccgccgaccaccggca 226
            |||||||||||||||||||||
Sbjct: 4986 ccgtgccgccgaccaccggca 5006



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 170    tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218
              ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 412064 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 412112



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 166    gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
              |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 404001 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 404060

                   
Query: 226    agctc 230
              |||||
Sbjct: 404061 agctc 404065



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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 170   tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218
             ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 14228 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 14276



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 166  gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
            |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 6165 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 6224

                 
Query: 226  agctc 230
            |||||
Sbjct: 6225 agctc 6229



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>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1317D11
          Length = 135043

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 166    gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
              |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 128239 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 128298

                   
Query: 226    agctc 230
              |||||
Sbjct: 128299 agctc 128303



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>dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A02, full
           insert sequence
          Length = 957

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 493 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 434

                
Query: 226 agctc 230
           |||||
Sbjct: 433 agctc 429



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>dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C06, full
           insert sequence
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 294 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 353

                
Query: 226 agctc 230
           |||||
Sbjct: 354 agctc 358



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>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full
           insert sequence
          Length = 885

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 210 gccgccgaccaccggcagctc 230
           |||||||||||||||||||||
Sbjct: 519 gccgccgaccaccggcagctc 499



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>dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full
           insert sequence
          Length = 958

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438

                
Query: 226 agctc 230
           |||||
Sbjct: 437 agctc 433



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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    ccgtgccgccgaccaccggca 226
              |||||||||||||||||||||
Sbjct: 176689 ccgtgccgccgaccaccggca 176669



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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    ccgtgccgccgaccaccggca 226
              |||||||||||||||||||||
Sbjct: 176689 ccgtgccgccgaccaccggca 176669



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     gctccagcaggtcggggcgg 162
               ||||||||||||||||||||
Sbjct: 2613264 gctccagcaggtcggggcgg 2613245



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>ref|XM_430279.1| PREDICTED: Gallus gallus hypothetical gene supported by CR390716
           (LOC425623), partial mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gagctccagcaggtcggggc 160
           ||||||||||||||||||||
Sbjct: 790 gagctccagcaggtcggggc 771



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>emb|CR390716.1| Gallus gallus finished cDNA, clone ChEST596h18
          Length = 663

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gagctccagcaggtcggggc 160
           ||||||||||||||||||||
Sbjct: 493 gagctccagcaggtcggggc 474



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 150     caggtcggggcggacggtct 169
               ||||||||||||||||||||
Sbjct: 1735622 caggtcggggcggacggtct 1735641


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,749,698
Number of Sequences: 3902068
Number of extensions: 1749698
Number of successful extensions: 30107
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29773
Number of HSP's gapped (non-prelim): 335
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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