Clone Name | rbaet94g12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 168 bits (85), Expect = 7e-39 Identities = 139/157 (88%) Strand = Plus / Plus Query: 122 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181 ||||||| ||||||| ||||||||| |||||||| ||||||| |||| |||||||||||| Sbjct: 83581 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 83640 Query: 182 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241 | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 83641 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 83700 Query: 242 cgccggtgtcgtcgcgccccatcacggtcaccgagct 278 ||||||||||||||||||| | |||||||||||||| Sbjct: 83701 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 83737 Score = 65.9 bits (33), Expect = 7e-08 Identities = 126/157 (80%) Strand = Plus / Plus Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211 ||||| ||| ||| |||||||| || |||||||| |||||| | ||||| |||||||| Sbjct: 59932 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 59991 Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271 |||||||||||| |||||| | ||||| | | || ||||||| | ||| | ||||| | Sbjct: 59992 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 60051 Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308 ||||||| || ||| | | ||||||||| |||||||| Sbjct: 60052 ccgagctgccggcgaacggccccgacgtcagcaccac 60088 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 119 ctcacgggttgacgtagatgtcgagctc 146 |||| ||||||||||||| ||||||||| Sbjct: 59887 ctcaggggttgacgtagacgtcgagctc 59914
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 168 bits (85), Expect = 7e-39 Identities = 139/157 (88%) Strand = Plus / Minus Query: 122 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181 ||||||| ||||||| ||||||||| |||||||| ||||||| |||| |||||||||||| Sbjct: 24738907 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 24738848 Query: 182 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241 | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 24738847 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 24738788 Query: 242 cgccggtgtcgtcgcgccccatcacggtcaccgagct 278 ||||||||||||||||||| | |||||||||||||| Sbjct: 24738787 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 24738751 Score = 65.9 bits (33), Expect = 7e-08 Identities = 126/157 (80%) Strand = Plus / Minus Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211 ||||| ||| ||| |||||||| || |||||||| |||||| | ||||| |||||||| Sbjct: 24762556 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 24762497 Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271 |||||||||||| |||||| | ||||| | | || ||||||| | ||| | ||||| | Sbjct: 24762496 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 24762437 Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308 ||||||| || ||| | | ||||||||| |||||||| Sbjct: 24762436 ccgagctgccggcgaacggccccgacgtcagcaccac 24762400 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gccgccgaccaccggcagctc 230 ||||||||||||||||||||| Sbjct: 5919207 gccgccgaccaccggcagctc 5919187 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 ctcacgggttgacgtagatgtcgagctc 146 |||| ||||||||||||| ||||||||| Sbjct: 24762601 ctcaggggttgacgtagacgtcgagctc 24762574
>dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E08, full insert sequence Length = 766 Score = 168 bits (85), Expect = 7e-39 Identities = 139/157 (88%) Strand = Plus / Minus Query: 122 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181 ||||||| ||||||| ||||||||| |||||||| ||||||| |||| |||||||||||| Sbjct: 512 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 453 Query: 182 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241 | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 452 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 393 Query: 242 cgccggtgtcgtcgcgccccatcacggtcaccgagct 278 ||||||||||||||||||| | |||||||||||||| Sbjct: 392 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 356
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 168 bits (85), Expect = 7e-39 Identities = 139/157 (88%) Strand = Plus / Minus Query: 122 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 181 ||||||| ||||||| ||||||||| |||||||| ||||||| |||| |||||||||||| Sbjct: 25050577 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 25050518 Query: 182 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 241 | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| Sbjct: 25050517 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 25050458 Query: 242 cgccggtgtcgtcgcgccccatcacggtcaccgagct 278 ||||||||||||||||||| | |||||||||||||| Sbjct: 25050457 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 25050421 Score = 65.9 bits (33), Expect = 7e-08 Identities = 126/157 (80%) Strand = Plus / Minus Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211 ||||| ||| ||| |||||||| || |||||||| |||||| | ||||| |||||||| Sbjct: 25074226 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 25074167 Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271 |||||||||||| |||||| | ||||| | | || ||||||| | ||| | ||||| | Sbjct: 25074166 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 25074107 Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308 ||||||| || ||| | | ||||||||| |||||||| Sbjct: 25074106 ccgagctgccggcgaacggccccgacgtcagcaccac 25074070 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gccgccgaccaccggcagctc 230 ||||||||||||||||||||| Sbjct: 5985684 gccgccgaccaccggcagctc 5985664 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 ctcacgggttgacgtagatgtcgagctc 146 |||| ||||||||||||| ||||||||| Sbjct: 25074271 ctcaggggttgacgtagacgtcgagctc 25074244
>dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D07, full insert sequence Length = 839 Score = 139 bits (70), Expect = 6e-30 Identities = 115/130 (88%) Strand = Plus / Plus Query: 149 gcaggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccg 208 ||||||| ||||||| |||| ||||||||||||| ||| ||||||| | ||||||||||| Sbjct: 1 gcaggtcagggcggatggtcctccacagcacgtaccctctcgccatcctgaactgccccg 60 Query: 209 tgccgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacgg 268 |||| || ||||||| |||||| ||||||||| ||||||||||||||||||| | |||| Sbjct: 61 tgccccccaccaccgtcagctcccgcaccgccgcgccggtgtcgtcgcgcccgacgacgg 120 Query: 269 tcaccgagct 278 |||||||||| Sbjct: 121 tcaccgagct 130
>emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin, clone 4B10T7 Length = 336 Score = 71.9 bits (36), Expect = 1e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 160 cggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgcc 215 ||||||||||||||||||||||| ||| | ||||| | |||||||||||||||||| Sbjct: 90 cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgcc 145
>dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049N05, full insert sequence Length = 836 Score = 65.9 bits (33), Expect = 7e-08 Identities = 126/157 (80%) Strand = Plus / Minus Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211 ||||| ||| ||| |||||||| || |||||||| |||||| | ||||| |||||||| Sbjct: 487 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 428 Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271 |||||||||||| |||||| | ||||| | | || ||||||| | ||| | ||||| | Sbjct: 427 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 368 Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308 ||||||| || ||| | | ||||||||| |||||||| Sbjct: 367 ccgagctgccggcgaacggccccgacgtcagcaccac 331 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 ctcacgggttgacgtagatgtcgagctc 146 |||| ||||||||||||| ||||||||| Sbjct: 532 ctcaggggttgacgtagacgtcgagctc 505
>dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D09, full insert sequence Length = 786 Score = 65.9 bits (33), Expect = 7e-08 Identities = 126/157 (80%) Strand = Plus / Minus Query: 152 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 211 ||||| ||| ||| |||||||| || |||||||| |||||| | ||||| |||||||| Sbjct: 496 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 437 Query: 212 cgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacggtca 271 |||||||||||| |||||| | ||||| | | || ||||||| | ||| | ||||| | Sbjct: 436 cgccgaccaccgacagctccctcaccggcgccgcgatgtcgtccctcccgacgacggtga 377 Query: 272 ccgagctccccgcgtaggtccccgacgtgagcaccac 308 ||||||| || ||| | | ||||||||| |||||||| Sbjct: 376 ccgagctgccggcgaacggccccgacgtcagcaccac 340 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 ctcacgggttgacgtagatgtcgagctc 146 |||| ||||||||||||| ||||||||| Sbjct: 541 ctcaggggttgacgtagacgtcgagctc 514
>ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBb0058B20.4), mRNA Length = 486 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cccgtgccgccgaccaccggcagctc 230 ||||||||||||||||||||| |||| Sbjct: 442 cccgtgccgccgaccaccggccgctc 417
>ref|NM_196355.1| Oryza sativa (japonica cultivar-group) putative disease resistance response protein (OSJNBb0058B20.9), mRNA Length = 567 Score = 44.1 bits (22), Expect = 0.26 Identities = 37/42 (88%) Strand = Plus / Minus Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230 |||||| ||||||| ||||||||||| ||||||||| |||| Sbjct: 471 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 430
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cccgtgccgccgaccaccggcagctc 230 ||||||||||||||||||||| |||| Sbjct: 6776 cccgtgccgccgaccaccggccgctc 6801
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 44.1 bits (22), Expect = 0.26 Identities = 37/42 (88%) Strand = Plus / Minus Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230 |||||| ||||||| ||||||||||| ||||||||| |||| Sbjct: 33234 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 33193 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 205 cccgtgccgccgaccaccggcagctc 230 ||||||||||||||||||||| |||| Sbjct: 12990 cccgtgccgccgaccaccggccgctc 12965
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cccgtgccgccgaccaccggcagctc 230 ||||||||||||||||||||| |||| Sbjct: 12907860 cccgtgccgccgaccaccggccgctc 12907885 Score = 44.1 bits (22), Expect = 0.26 Identities = 37/42 (88%) Strand = Plus / Plus Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230 |||||| ||||||| ||||||||||| ||||||||| |||| Sbjct: 12887616 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12887657
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gctcacgcaccgccacgccggt 248 |||||||||||||||||||||| Sbjct: 19684452 gctcacgcaccgccacgccggt 19684473
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 203 gccccgtgccgccgaccaccggcagc 228 |||||| ||||||||||||||||||| Sbjct: 4697970 gccccgcgccgccgaccaccggcagc 4697945
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gctcacgcaccgccacgccggt 248 |||||||||||||||||||||| Sbjct: 41210 gctcacgcaccgccacgccggt 41231
>dbj|AK108922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H09, full insert sequence Length = 785 Score = 44.1 bits (22), Expect = 0.26 Identities = 37/42 (88%) Strand = Plus / Minus Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230 |||||| ||||||| ||||||||||| ||||||||| |||| Sbjct: 574 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 533
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cccgtgccgccgaccaccggcagctc 230 ||||||||||||||||||||| |||| Sbjct: 12915200 cccgtgccgccgaccaccggccgctc 12915225 Score = 44.1 bits (22), Expect = 0.26 Identities = 37/42 (88%) Strand = Plus / Plus Query: 189 cgccatacggaactgccccgtgccgccgaccaccggcagctc 230 |||||| ||||||| ||||||||||| ||||||||| |||| Sbjct: 12894956 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12894997
>ref|NM_186143.1| Oryza sativa (japonica cultivar-group), mRNA Length = 663 Score = 42.1 bits (21), Expect = 1.0 Identities = 42/49 (85%) Strand = Plus / Minus Query: 170 tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218 |||||||||||||||| | ||||| ||||| ||||||||||||||| Sbjct: 526 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 478
>ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA Length = 958 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Minus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438 Query: 226 agctc 230 ||||| Sbjct: 437 agctc 433
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04, complete sequence Length = 164882 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gccgccgaccaccggcagctc 230 ||||||||||||||||||||| Sbjct: 129091 gccgccgaccaccggcagctc 129071
>emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gene and ORF2, ORF3 and ORF4 Length = 5966 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 ccgtgccgccgaccaccggca 226 ||||||||||||||||||||| Sbjct: 4986 ccgtgccgccgaccaccggca 5006
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 170 tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218 |||||||||||||||| | ||||| ||||| ||||||||||||||| Sbjct: 412064 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 412112 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 404001 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 404060 Query: 226 agctc 230 ||||| Sbjct: 404061 agctc 404065
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 42.1 bits (21), Expect = 1.0 Identities = 42/49 (85%) Strand = Plus / Plus Query: 170 tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 218 |||||||||||||||| | ||||| ||||| ||||||||||||||| Sbjct: 14228 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 14276 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 6165 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 6224 Query: 226 agctc 230 ||||| Sbjct: 6225 agctc 6229
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 128239 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 128298 Query: 226 agctc 230 ||||| Sbjct: 128299 agctc 128303
>dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A02, full insert sequence Length = 957 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Minus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 493 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 434 Query: 226 agctc 230 ||||| Sbjct: 433 agctc 429
>dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C06, full insert sequence Length = 1001 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 294 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 353 Query: 226 agctc 230 ||||| Sbjct: 354 agctc 358
>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full insert sequence Length = 885 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gccgccgaccaccggcagctc 230 ||||||||||||||||||||| Sbjct: 519 gccgccgaccaccggcagctc 499
>dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full insert sequence Length = 958 Score = 42.1 bits (21), Expect = 1.0 Identities = 54/65 (83%) Strand = Plus / Minus Query: 166 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 225 |||||||||| ||||||||| | ||||| | ||||| ||||||||||| ||||| | | Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438 Query: 226 agctc 230 ||||| Sbjct: 437 agctc 433
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ccgtgccgccgaccaccggca 226 ||||||||||||||||||||| Sbjct: 176689 ccgtgccgccgaccaccggca 176669
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ccgtgccgccgaccaccggca 226 ||||||||||||||||||||| Sbjct: 176689 ccgtgccgccgaccaccggca 176669
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gctccagcaggtcggggcgg 162 |||||||||||||||||||| Sbjct: 2613264 gctccagcaggtcggggcgg 2613245
>ref|XM_430279.1| PREDICTED: Gallus gallus hypothetical gene supported by CR390716 (LOC425623), partial mRNA Length = 1182 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gagctccagcaggtcggggc 160 |||||||||||||||||||| Sbjct: 790 gagctccagcaggtcggggc 771
>emb|CR390716.1| Gallus gallus finished cDNA, clone ChEST596h18 Length = 663 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gagctccagcaggtcggggc 160 |||||||||||||||||||| Sbjct: 493 gagctccagcaggtcggggc 474
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caggtcggggcggacggtct 169 |||||||||||||||||||| Sbjct: 1735622 caggtcggggcggacggtct 1735641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,749,698 Number of Sequences: 3902068 Number of extensions: 1749698 Number of successful extensions: 30107 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 29773 Number of HSP's gapped (non-prelim): 335 length of query: 309 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 287 effective length of database: 17,147,199,772 effective search space: 4921246334564 effective search space used: 4921246334564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)