ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete se... 42 0.71
2emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 42 0.71
3emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 42 0.71
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.71
5dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
6dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
7dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
8dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
9dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
10dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
11dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.71
12gb|AC025763.5| Homo sapiens chromosome 16 clone CTB-186A5, compl... 40 2.8
13gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 40 2.8

>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence
          Length = 164963

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   atactttgaattctcattaca 174
             |||||||||||||||||||||
Sbjct: 69909 atactttgaattctcattaca 69929



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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
              complete sequence
          Length = 138969

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                           
Query: 140    gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
              |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 122256 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 122212



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>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
            complete sequence
          Length = 176383

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 7937 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 7893



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                             
Query: 140      gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
                |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 22913481 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 22913437



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>dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D11, full
            insert sequence
          Length = 1468

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1372 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1328



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>dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G03, full
            insert sequence
          Length = 1540

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1377 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1333



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>dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F06, full
            insert sequence
          Length = 1538

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1377 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1333



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>dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E09, full
            insert sequence
          Length = 1566

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1377 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1333



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>dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B10, full
            insert sequence
          Length = 1473

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1377 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1333



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>dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H17, full
            insert sequence
          Length = 1571

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 140  gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
            |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 1373 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 1329



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>dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O22, full
           insert sequence
          Length = 778

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                        
Query: 140 gtgttgggagctcgatactttgaa-ttctcattacaaagaatcga 183
           |||||||| |||||| |||| ||| |||||||||||||| |||||
Sbjct: 592 gtgttgggcgctcgaaacttcgaaattctcattacaaaggatcga 548



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>gb|AC025763.5| Homo sapiens chromosome 16 clone CTB-186A5, complete sequence
          Length = 194690

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gagtattacagatgcacagc 42
              ||||||||||||||||||||
Sbjct: 122737 gagtattacagatgcacagc 122756



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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   atactttgaattctcattacaaag 177
             |||||||||||||||||| |||||
Sbjct: 22226 atactttgaattctcatttcaaag 22203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,062,938
Number of Sequences: 3902068
Number of extensions: 1062938
Number of successful extensions: 66364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 66330
Number of HSP's gapped (non-prelim): 44
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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