>YADD_ECOLI (P31665) Hypothetical protein yadD|
          Length = 300

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 DHDALPLRV*I*FRPGAAAPAVRTLPWFCSFRAPDL 377
           DHD LPL V I F  G A P   ++ WF  F +P+L
Sbjct: 109 DHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPEL 144

>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)|
          Length = 523

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +1

Query: 208 GASTCIRRELNSRAKMGLDNKTMTLCLCASESDSDPAPLLLPSEHS------RGSAVLGL 369
           G  T + +E N    + LD     L   +S  DS    +++PS+         G  +L L
Sbjct: 379 GLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDRVMSEVYLGRQILNL 438

Query: 370 QTFAGLTGRTLHSTLQEYLRRSG*SSVWPLKLGSD 474
               G      H TL ++ +R G +   P+ LGSD
Sbjct: 439 VATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSD 473

>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)|
          Length = 511

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +1

Query: 217 TCIRRELNSRAKMGLDNKTMTLCLCASESDS---DPAPLLLPSEHSRGSAVLGLQTFAGL 387
           T + +E N    + LD  T +L   +S  DS    P+   + SE   G  +L L    G 
Sbjct: 375 TVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQDRVMSELFLGRQILNLVACEGE 434

Query: 388 TGRTLHSTLQEYLRRSG*SSVWPLKLGSD 474
                H TL ++  R G     P+ +GS+
Sbjct: 435 DRVERHETLNQWRNRFGLGGFKPVSIGSN 463

>SYIC_MOUSE (Q8BU30) Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)|
            (Isoleucine--tRNA ligase) (IleRS) (IRS)
          Length = 1262

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 14/58 (24%)
 Frame = -2

Query: 470  LPSFSGQTE--DHPDLLKYSCKVECKVRPVSPAKVWSPKT------------AEPREC 339
            L  F G+TE  +  DLL  S +  C     SP+ + SP T            AEP+EC
Sbjct: 1129 LSVFHGETEIQNQTDLLSLSGRTLCVTAGASPSPISSPSTLLCQYLNLQLLNAEPQEC 1186

>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 764

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 446 EDHPDLLKYSCKVECKVRPVSPAKVW 369
           EDHPDL++ + K +   +P +P ++W
Sbjct: 181 EDHPDLIQNAKKSDIPEKPKTPQQLW 206

>CARA_PSEPK (Q88DU5) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 378

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = +1

Query: 238 NSRAKMGLDNKTMTLCLCASESDSDPAPLLLPSEHSRGSAVLGLQTFAGLTGRTLHSTLQ 417
           N  A  G+D + +T  L   E  +    +L     S  +A+   + F GL G  L   + 
Sbjct: 106 NVVAIAGIDTRRLTRIL--REKGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVS 163

Query: 418 EYLRRSG*SSVWPLKLGS 471
              R    SSVW LK  S
Sbjct: 164 TKERYEWRSSVWELKTDS 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,409,159
Number of Sequences: 219361
Number of extensions: 1401739
Number of successful extensions: 4038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)