ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet94e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506569.1| PREDICTED Oryza sativa (japonica cultivar-group... 143 5e-31
2ref|XM_479534.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
3dbj|AK099229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
4dbj|AK065079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5gb|BT018687.1| Zea mays clone EL01N0512A10.d mRNA sequence 109 8e-21
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
7dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
8dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
9gb|BT015178.1| Drosophila melanogaster SD11791 full insert cDNA 42 1.5
10gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 1.5
11gb|AC129218.4| Mus musculus BAC clone RP24-471L9 from chromosome... 42 1.5
12ref|NM_135235.2| Drosophila melanogaster CG10805-RA (CG10805), mRNA 42 1.5
13gb|AY069800.1| Drosophila melanogaster SD03723 full length cDNA 42 1.5
14gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27... 42 1.5
15gb|AC016749.4|AC016749 Homo sapiens clone RP11-504E20, complete ... 42 1.5
16gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24... 42 1.5
17gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 ... 42 1.5
18gb|AC151406.2| Mus musculus BAC clone RP23-47J5 from 18, complet... 42 1.5
19gb|AC114411.24| Mus musculus chromosome 5, clone RP23-162F3, com... 40 5.8
20emb|Z81548.1|CEF54F12 Caenorhabditis elegans Cosmid F54F12, comp... 40 5.8
21ref|XM_947791.1| Theileria annulata strain Ankara hypothetical p... 40 5.8
22gb|AC139110.4| Danio rerio strain Tue clone CH211-154N18, comple... 40 5.8
23emb|AL583840.10| Human DNA sequence from clone RP11-438N24 on ch... 40 5.8
24emb|BX842606.1|OSJN00297 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
25gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence 40 5.8
26gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, co... 40 5.8
27gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cance... 40 5.8
28ref|NM_067307.1| Caenorhabditis elegans F54F12.2 (F54F12.2) mRNA... 40 5.8
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete... 40 5.8
32gb|AC138710.5| Homo sapiens chromosome 17, clone RP11-822E23, co... 40 5.8
33gb|AC116622.6| Homo sapiens BAC clone RP11-312L16 from 4, comple... 40 5.8
34dbj|AP004610.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35emb|BX470130.4| Zebrafish DNA sequence from clone DKEY-270I2 in ... 40 5.8
36gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, com... 40 5.8 
>ref|XM_506569.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1409_C08.26 mRNA
          Length = 1549

 Score =  143 bits (72), Expect = 5e-31
 Identities = 120/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 218  gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
            ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 1345 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 1286

                                                                        
Query: 278  accacgttcgccgatagagtctcatgcttccacagatctctaacagaataggcagacgaa 337
            || |||||| | |||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1285 acaacgttctctgatagagtttcatgcttccacagatctctaacagaatagggagatgaa 1226

                            
Query: 338  ccatcaaggcctacag 353
            ||||||||||||||||
Sbjct: 1225 ccatcaaggcctacag 1210
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>ref|XM_479534.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1549

 Score =  143 bits (72), Expect = 5e-31
 Identities = 120/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 218  gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
            ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 1345 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 1286

                                                                        
Query: 278  accacgttcgccgatagagtctcatgcttccacagatctctaacagaataggcagacgaa 337
            || |||||| | |||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1285 acaacgttctctgatagagtttcatgcttccacagatctctaacagaatagggagatgaa 1226

                            
Query: 338  ccatcaaggcctacag 353
            ||||||||||||||||
Sbjct: 1225 ccatcaaggcctacag 1210
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>dbj|AK099229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093O17, full
            insert sequence
          Length = 1628

 Score =  143 bits (72), Expect = 5e-31
 Identities = 120/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 218  gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
            ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 1345 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 1286

                                                                        
Query: 278  accacgttcgccgatagagtctcatgcttccacagatctctaacagaataggcagacgaa 337
            || |||||| | |||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1285 acaacgttctctgatagagtttcatgcttccacagatctctaacagaatagggagatgaa 1226

                            
Query: 338  ccatcaaggcctacag 353
            ||||||||||||||||
Sbjct: 1225 ccatcaaggcctacag 1210
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>dbj|AK065079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K24, full
            insert sequence
          Length = 1628

 Score =  135 bits (68), Expect = 1e-28
 Identities = 119/136 (87%)
 Strand = Plus / Minus

                                                                        
Query: 218  gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
            ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 1345 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 1286

                                                                        
Query: 278  accacgttcgccgatagagtctcatgcttccacagatctctaacagaataggcagacgaa 337
            || |||||| | |||||||| | ||||||||||||||||||||||||||||| ||| |||
Sbjct: 1285 acaacgttctctgatagagttttatgcttccacagatctctaacagaatagggagatgaa 1226

                            
Query: 338  ccatcaaggcctacag 353
            ||||||||||||||||
Sbjct: 1225 ccatcaaggcctacag 1210
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>gb|BT018687.1| Zea mays clone EL01N0512A10.d mRNA sequence
          Length = 1829

 Score =  109 bits (55), Expect = 8e-21
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                        
Query: 230  atgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcctaccacgttcgcc 289
            ||||||||||||  ||| ||||  || ||||| || |||||||||||||| || ||  ||
Sbjct: 1420 atgtacatcttggtgtcatgcacgtcaacttgagcgccaaaagttcctacgacattttcc 1361

                                                                        
Query: 290  gatagagtctcatgcttccacagatctctaacagaataggcagacgaaccatcaaggcct 349
            |||||||| ||||||||||||||||| ||||||||||||||||   | ||||||||||||
Sbjct: 1360 gatagagtttcatgcttccacagatccctaacagaataggcagcatacccatcaaggcct 1301

                                                                       
Query: 350  acagcaggcaatgtcatcgtgatattaacagtctctgaacaacgattccataaagcaac 408
            || || |||| | |||| || |  ||| |||| ||||||||||| ||||| | ||||||
Sbjct: 1300 actgctggcagtttcattgtaacgttagcagtatctgaacaacggttccacagagcaac 1242
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                                  
Query: 304      cttccacagatctctaacagaataggcagacgaaccatcaaggcctacag 353
                |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 28714872 cttccacagatctctaacagaatagggagatgaaccatcaaggcctacag 28714823



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                            
Query: 218      gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
                ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 28715299 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 28715240

                                            
Query: 278      accacgttcgccgatagagtctcatgct 305
                || |||||| | |||||||| |||||||
Sbjct: 28715239 acaacgttctctgatagagtttcatgct 28715212
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>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1205_F02
          Length = 112862

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                               
Query: 304   cttccacagatctctaacagaataggcagacgaaccatcaaggcctacag 353
             |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 22433 cttccacagatctctaacagaatagggagatgaaccatcaaggcctacag 22384



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 218   gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
             ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 22860 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 22801

                                         
Query: 278   accacgttcgccgatagagtctcatgct 305
             || |||||| | |||||||| |||||||
Sbjct: 22800 acaacgttctctgatagagtttcatgct 22773
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>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1409_C08
          Length = 90673

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                               
Query: 304   cttccacagatctctaacagaataggcagacgaaccatcaaggcctacag 353
             |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 90042 cttccacagatctctaacagaatagggagatgaaccatcaaggcctacag 89993



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 218   gcgggtgtgaaaatgtacatcttgcagtcgtgcatatcgacttgggctccaaaagttcct 277
             ||||| |||||||| ||||| |||||||| ||||  || ||||| || ||||||||||| 
Sbjct: 90469 gcgggagtgaaaatatacattttgcagtcatgcacgtcaacttgcgccccaaaagttcca 90410

                                         
Query: 278   accacgttcgccgatagagtctcatgct 305
             || |||||| | |||||||| |||||||
Sbjct: 90409 acaacgttctctgatagagtttcatgct 90382
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>gb|BT015178.1| Drosophila melanogaster SD11791 full insert cDNA
          Length = 6463

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  tttctatcaccgacttgtaga 207
            |||||||||||||||||||||
Sbjct: 3176 tttctatcaccgacttgtaga 3156
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 66      atcgagtattttgacgaaaac 86
               |||||||||||||||||||||
Sbjct: 2680334 atcgagtattttgacgaaaac 2680314
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>gb|AC129218.4| Mus musculus BAC clone RP24-471L9 from chromosome 18, complete sequence
          Length = 188781

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    atgctggatatatgattgatc 68
             |||||||||||||||||||||
Sbjct: 96271 atgctggatatatgattgatc 96291
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>ref|NM_135235.2| Drosophila melanogaster CG10805-RA (CG10805), mRNA
          Length = 6459

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  tttctatcaccgacttgtaga 207
            |||||||||||||||||||||
Sbjct: 3176 tttctatcaccgacttgtaga 3156
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>gb|AY069800.1| Drosophila melanogaster SD03723 full length cDNA
          Length = 5246

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 187  tttctatcaccgacttgtaga 207
            |||||||||||||||||||||
Sbjct: 1960 tttctatcaccgacttgtaga 1940
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>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone
              BACR20B21, complete sequence
          Length = 166512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    tttctatcaccgacttgtaga 207
              |||||||||||||||||||||
Sbjct: 115307 tttctatcaccgacttgtaga 115327
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>gb|AC016749.4|AC016749 Homo sapiens clone RP11-504E20, complete sequence
          Length = 187117

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    attgagagtaaattttgcatc 47
             |||||||||||||||||||||
Sbjct: 90652 attgagagtaaattttgcatc 90632
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>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete
              sequence
          Length = 270751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    tttctatcaccgacttgtaga 207
              |||||||||||||||||||||
Sbjct: 100873 tttctatcaccgacttgtaga 100853
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>gb|AC004277.1|AC004277 Drosophila melanogaster DNA sequence (P1 DS01321 (D143)), complete
             sequence
          Length = 82849

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   tttctatcaccgacttgtaga 207
             |||||||||||||||||||||
Sbjct: 67245 tttctatcaccgacttgtaga 67265
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>gb|AC151406.2| Mus musculus BAC clone RP23-47J5 from 18, complete sequence
          Length = 230518

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     atgctggatatatgattgatc 68
              |||||||||||||||||||||
Sbjct: 161847 atgctggatatatgattgatc 161867
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>gb|AC114411.24| Mus musculus chromosome 5, clone RP23-162F3, complete sequence
          Length = 208432

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 97     atatatataccatgtgacctggaagttggatg 128
              ||||||||||| | ||| ||||||||||||||
Sbjct: 161221 atatatataccttctgaactggaagttggatg 161190
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>emb|Z81548.1|CEF54F12 Caenorhabditis elegans Cosmid F54F12, complete sequence
          Length = 32715

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tcgagtattttgacgaaaac 86
             ||||||||||||||||||||
Sbjct: 12782 tcgagtattttgacgaaaac 12801
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>ref|XM_947791.1| Theileria annulata strain Ankara hypothetical protein (TA07250)
            partial mRNA
          Length = 4569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  ttgaccaaagtttgtttcca 149
            ||||||||||||||||||||
Sbjct: 3310 ttgaccaaagtttgtttcca 3291
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>gb|AC139110.4| Danio rerio strain Tue clone CH211-154N18, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 381   tctctgaacaacgattccataaagcaac 408
             ||||||| |||||||| |||||||||||
Sbjct: 24644 tctctgatcaacgattacataaagcaac 24671
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>emb|AL583840.10| Human DNA sequence from clone RP11-438N24 on chromosome 6, complete
             sequence
          Length = 82865

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tgatacatatatataccatg 110
             ||||||||||||||||||||
Sbjct: 67760 tgatacatatatataccatg 67741
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>emb|BX842606.1|OSJN00297 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1292H11, complete
              sequence
          Length = 152632

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttttgcatcatgctggatat 58
              ||||||||||||||||||||
Sbjct: 103276 ttttgcatcatgctggatat 103295
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>gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence
          Length = 176040

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     gctgatacatatatatacca 108
              ||||||||||||||||||||
Sbjct: 103501 gctgatacatatatatacca 103520
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>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gctgatacatatatatacca 108
             ||||||||||||||||||||
Sbjct: 84385 gctgatacatatatatacca 84404
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>gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      agagcctcccagaaagagatgtac 24
              ||||||||||||||| ||||||||
Sbjct: 101918 agagcctcccagaaaaagatgtac 101941
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>ref|NM_067307.1| Caenorhabditis elegans F54F12.2 (F54F12.2) mRNA, complete cds
          Length = 855

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  tcgagtattttgacgaaaac 86
           ||||||||||||||||||||
Sbjct: 137 tcgagtattttgacgaaaac 156
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      ttttgcatcatgctggatat 58
               ||||||||||||||||||||
Sbjct: 1444252 ttttgcatcatgctggatat 1444271
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 39       ttttgcatcatgctggatat 58
                ||||||||||||||||||||
Sbjct: 16674499 ttttgcatcatgctggatat 16674518
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>gb|AF090447.2| Zea mays 22 kDa alpha zein gene cluster, complete sequence
          Length = 346296

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     taaattttgcatcatgctggatat 58
              |||||| |||||||||||||||||
Sbjct: 123374 taaattatgcatcatgctggatat 123397



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     taaattttgcatcatgctggatat 58
              |||||| |||||||||||||||||
Sbjct: 118859 taaattatgcatcatgctggatat 118882
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>gb|AC138710.5| Homo sapiens chromosome 17, clone RP11-822E23, complete sequence
          Length = 147089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gctgatacatatatatacca 108
             ||||||||||||||||||||
Sbjct: 22010 gctgatacatatatatacca 21991
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>gb|AC116622.6| Homo sapiens BAC clone RP11-312L16 from 4, complete sequence
          Length = 148850

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gctgatacatatatatacca 108
             ||||||||||||||||||||
Sbjct: 24933 gctgatacatatatatacca 24952
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>dbj|AP004610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1109A06
          Length = 171438

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttttgcatcatgctggatat 58
              ||||||||||||||||||||
Sbjct: 104448 ttttgcatcatgctggatat 104467
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>emb|BX470130.4| Zebrafish DNA sequence from clone DKEY-270I2 in linkage group 18,
              complete sequence
          Length = 191401

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 381    tctctgaacaacgattccataaagcaac 408
              ||||||| |||||||| |||||||||||
Sbjct: 170640 tctctgatcaacgattacataaagcaac 170613
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>gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, complete sequence
          Length = 193324

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    caaattgagagtaaattttg 43
             ||||||||||||||||||||
Sbjct: 65283 caaattgagagtaaattttg 65302


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,044,947
Number of Sequences: 3902068
Number of extensions: 4044947
Number of successful extensions: 88067
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87892
Number of HSP's gapped (non-prelim): 175
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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