ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 329 4e-87
2ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 149 7e-33
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 149 7e-33
4gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 149 7e-33
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
6dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 7e-33
7emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 133 4e-28
8gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 113 4e-22
9gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 105 1e-19
10gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 105 1e-19
11gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence 105 1e-19
12gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene... 103 4e-19
13ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
14gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 90 6e-15
15gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 90 6e-15
16gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (L... 88 2e-14
17gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 88 2e-14
18gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene,... 80 6e-12
19gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of... 44 0.31
20ref|NM_003028.1| Homo sapiens Src homology 2 domain containing a... 42 1.2
21gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-car... 42 1.2
22emb|X75342.1|HSSHB H.sapiens SHB mRNA 42 1.2
23gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.2
24gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
25gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 4.9
26gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 4.9
27gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 4.9
28gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 4.9
29gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 40 4.9
30emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 4.9
31gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 4.9
32emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.9
33emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 40 4.9
34gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 4.9
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.9
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.9
37dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.9 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  329 bits (166), Expect = 4e-87
 Identities = 212/222 (95%), Gaps = 4/222 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgag 60
           ||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 3   cacacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgag 59

                                                                       
Query: 61  cgaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccc 120
           | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 60  c-aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccc 118

                                                                       
Query: 121 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 178

                                                     
Query: 181 ccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
           ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cccacgtcatggacggcgtcaccgagctcctcggccgcggcg 220



 Score =  281 bits (142), Expect = 8e-73
 Identities = 148/150 (98%)
 Strand = Plus / Plus

                                                                       
Query: 219 ggcgaacctggagcaatggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 278
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaa 350

                                                                       
Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 351 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggggccatcat 410

                                         
Query: 339 cgtcaagaacaaccacgcctccgagttctt 368
           ||||||||||||||||||||||||||||||
Sbjct: 411 cgtcaagaacaaccacgcctccgagttctt 440
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score =  149 bits (75), Expect = 7e-33
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                       
Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 42  cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101

                                                          
Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
           ||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 148



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
           |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 362
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  149 bits (75), Expect = 7e-33
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                            
Query: 116      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
                ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360

                                                               
Query: 176      cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
                ||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 30023407



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Plus

                                                                            
Query: 123      ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
                ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816

                                                 
Query: 183      accgtcatggacggcgtcaccgagctcctcggc 215
                |||||||| |||||| ||  |||| ||||||||
Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggc 27798849



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                         
Query: 328      ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
                |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30023659 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 30023699



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 310      gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 354
                |||||||| || |||||||| |||||||||||||||||| |||||
Sbjct: 27799413 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 27799457



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       ggcgtcggcggcatcgtgag 91
                ||||||||||||||||||||
Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  149 bits (75), Expect = 7e-33
 Identities = 99/107 (92%)
 Strand = Plus / Minus

                                                                         
Query: 116   cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
             ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391

                                                            
Query: 176   cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
             ||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 84344



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                      
Query: 328   ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
             |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 84092 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 84052
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  149 bits (75), Expect = 7e-33
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                            
Query: 116      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
                ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782

                                                               
Query: 176      cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
                ||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 30114829



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Plus

                                                                            
Query: 123      ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
                ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140

                                                 
Query: 183      accgtcatggacggcgtcaccgagctcctcggc 215
                |||||||| |||||| ||  |||| ||||||||
Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggc 27890173



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                         
Query: 328      ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
                |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30115081 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 30115121



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 310      gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 354
                |||||||| || |||||||| |||||||||||||||||| |||||
Sbjct: 27890737 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 27890781



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       ggcgtcggcggcatcgtgag 91
                ||||||||||||||||||||
Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
           insert sequence
          Length = 2928

 Score =  149 bits (75), Expect = 7e-33
 Identities = 99/107 (92%)
 Strand = Plus / Plus

                                                                       
Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216

                                                          
Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
           ||||||||||||||| |||||| || ||||| |||||||||||||||
Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcg 263



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
           |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 437 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 477
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score =  133 bits (67), Expect = 4e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                       
Query: 116 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 175
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198

                                                          
Query: 176 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcg 222
           ||||||||||||||| ||  || || ||||| |||||||||||||||
Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcg 245



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
           |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 419 ggcgccatcatcgtcaagaacaaccacgccgccgagttctt 459
to top
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score =  113 bits (57), Expect = 4e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                       
Query: 272 gcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcg 331
           |||||||| |||||  ||||||||||||||||  |||||| |||| |||  | |||||||
Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgggaggtggagaagcagggcatcccgggcg 349

                                                
Query: 332 ccatcatcgtcaagaacaaccacgcctccgagttctt 368
           |||||||||||||||||||||||||||||||||||||
Sbjct: 350 ccatcatcgtcaagaacaaccacgcctccgagttctt 386
to top
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                        
Query: 268  accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 327
            |||||||||  |||||||| |||||| |||||||||  |||||| |||||||| ||||||
Sbjct: 993  accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 1052

                                                     
Query: 328  ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
            || ||| || |||||||||||||||||||| ||||||||||
Sbjct: 1053 ggggccgtcgtcgtcaagaacaaccacgccgccgagttctt 1093



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259

                                            
Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggc 292
to top
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 268 accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 327
           |||||||||  |||||||| |||||| |||||||||  |||||| |||||||| ||||||
Sbjct: 265 accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 324

                                                    
Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
           || ||| || |||||||||||||||||||| ||||||||||
Sbjct: 325 ggggccgtcgtcgtcaagaacaaccacgccgccgagttctt 365



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111

                                            
Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggc 144
to top
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence
          Length = 515

 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Plus

                                                                       
Query: 268 accggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccg 327
           |||||||||  |||||||| |||||| |||||||||  |||||| |||||||| ||||||
Sbjct: 327 accggcgagtccaagttcggcgtcacgttcgactgggaggtggagaagctgggagtgccg 386

                                                    
Query: 328 ggcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
           || ||| || |||||||||||||||||||| ||||||||||
Sbjct: 387 ggggccgtcgtcgtcaagaacaaccacgccgccgagttctt 427



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173

                                            
Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggc 206
to top
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region
            and partial cds
          Length = 3196

 Score =  103 bits (52), Expect = 4e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                        
Query: 269  ccggcgagaacaagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgg 328
            |||||||| || |||||  ||||||||||||||||  |||||| ||||  || || ||||
Sbjct: 2808 ccggcgaggaccagttccgcgtcaccttcgactgggaggtggagaagcacggcgtcccgg 2867

                                                    
Query: 329  gcgccatcatcgtcaagaacaaccacgcctccgagttctt 368
            ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2868 gcgccatcatcgtgaagaacaaccacgcctccgagttctt 2907



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 187  tcatggacggcgtcaccgagctcctcggccgcggcg 222
            ||||||||||| ||  |||| |||||||||||||||
Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcg 2422
to top
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
           ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111

                                            
Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215
           |||||||| |||||| ||  |||| ||||||||
Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggc 144



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 310 gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 354
           |||||||| || |||||||| |||||||||||||||||| |||||
Sbjct: 310 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 354
to top
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Plus

                                                                         
Query: 123   ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
             ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946

                                              
Query: 183   accgtcatggacggcgtcaccgagctcctcggc 215
             |||||||| |||||| ||  |||| ||||||||
Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggc 42979



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 310   gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 354
             |||||||| || |||||||| |||||||||||||||||| |||||
Sbjct: 43543 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 43587
to top
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                         
Query: 123   ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
             ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077

                                              
Query: 183   accgtcatggacggcgtcaccgagctcctcggc 215
             |||||||| |||||| ||  |||| ||||||||
Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggc 15044



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 310   gacaagctgggggtgccgggcgccatcatcgtcaagaacaaccac 354
             |||||||| || |||||||| |||||||||||||||||| |||||
Sbjct: 14480 gacaagctcggcgtgccgggggccatcatcgtcaagaaccaccac 14436
to top
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter
            region and partial cds
          Length = 5236

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                        
Query: 279  caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338
            |||||||| | ||||||||||||||  |||||| ||||| |||||||||||||||||| |
Sbjct: 4340 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 4399

                                        
Query: 339  cgtcaagaacaaccacgcctccgagttc 366
            |||||| ||| |||||  ||||||||||
Sbjct: 4400 cgtcaacaactaccacagctccgagttc 4427



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                        
Query: 123  ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
            ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625

                                             
Query: 183  accgtcatggacggcgtcaccgagctcctcggc 215
            ||| |||| |||||| ||  |||| ||||||||
Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggc 3658
to top
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                       
Query: 279 caagttcgccgtcaccttcgactggtcggtggacaagctgggggtgccgggcgccatcat 338
           |||||||| | ||||||||||||||  |||||| ||||| |||||||||||||||||| |
Sbjct: 347 caagttcggcctcaccttcgactgggaggtggagaagctcggggtgccgggcgccatcgt 406

                                       
Query: 339 cgtcaagaacaaccacgcctccgagttc 366
           |||||| ||| |||||  ||||||||||
Sbjct: 407 cgtcaacaactaccacagctccgagttc 434



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 123 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 182
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182

                                            
Query: 183 accgtcatggacggcgtcaccgagctcctcggc 215
           ||| |||| |||||| ||  |||| ||||||||
Sbjct: 183 accatcatcgacggcatcggcgagttcctcggc 215
to top
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds
          Length = 1160

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 147 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 206
           ||||||||||| |||||| ||||||||||||||||||||||| | |   ||||| |||||
Sbjct: 1   cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60

                           
Query: 207 ctcctcggccgcggcg 222
            |||||||||||||||
Sbjct: 61  ttcctcggccgcggcg 76
to top
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome
          Length = 8803

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 155  cgcgctcgacttcaacgacttcggcg 180
            ||||| ||||||||||||||||||||
Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
to top
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B
           (SHB), mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 100 cggggggcctccggggcgccc 120
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
to top
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase
           mRNA, partial cds
          Length = 775

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 176 cggcgccaccgtcatggacggcgtcaccg 204
           ||||||||| ||||||||||||| |||||
Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
to top
>emb|X75342.1|HSSHB H.sapiens SHB mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 100 cggggggcctccggggcgccc 120
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 191     ggacggcgtcaccgagctcctcggccgcggcga 223
               ||||||||| | |||| ||||||||||||||||
Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcga 1448833
to top
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ggcgtcggcggcatcgtgag 91
             ||||||||||||||||||||
Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 285     cgccgtcaccttcgactggtcggtggac 312
               ||||| ||||||||| ||||||||||||
Sbjct: 3465594 cgccggcaccttcgaatggtcggtggac 3465621
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gctcctgccgacgaacctgc 256
              ||||||||||||||||||||
Sbjct: 137505 gctcctgccgacgaacctgc 137486
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    acctgccgttcatcaccaccggcg 274
              ||||||||||||||| ||||||||
Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    acctgccgttcatcaccaccggcg 274
              ||||||||||||||| ||||||||
Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
to top
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     cggcggcatcgtgagcgacctgac 100
              ||||||||||| ||||||||||||
Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
to top
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    cggcggcatcgtgagcgacctgac 100
             ||||||||||| ||||||||||||
Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    ggtgccgggcgccatcatcg 340
              ||||||||||||||||||||
Sbjct: 608859 ggtgccgggcgccatcatcg 608840
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     gccgttcatcaccaccggcg 274
               ||||||||||||||||||||
Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
to top
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ggcgtcggcggcatcgtgag 91
              ||||||||||||||||||||
Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 175     tcggcgccaccgtcatggacggcg 198
               ||||||||| ||||||||||||||
Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 72      ggcgtcggcggcatcgtgagcgac 95
               |||||||||||||||||| |||||
Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     ggcgtcggcggcatcgtgagcgac 95
              |||||||||||||||||| |||||
Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 145    tgcgcaagaacgcgctcgacttca 168
              ||||||||||| ||||||||||||
Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
to top
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full
           insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  ggcgtcggcggcatcgtgag 91
           ||||||||||||||||||||
Sbjct: 613 ggcgtcggcggcatcgtgag 594
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     ggcgtcggcggcatcgtgagcgac 95
              |||||||||||||||||| |||||
Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,994,288
Number of Sequences: 3902068
Number of extensions: 1994288
Number of successful extensions: 41900
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40753
Number of HSP's gapped (non-prelim): 1143
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top