ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56h08 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 30.4 bits (67), Expect = 1.3 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +3 Query: 159 MTTDQPVISLRPG 197 MTTDQPVISLRPG Sbjct: 1 MTTDQPVISLRPG 13
>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC| 3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase) (CGS-PDE) (cGSPDE) Length = 941 Score = 29.6 bits (65), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +2 Query: 14 RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 154 RSQ P P E +++ FL+ P PP PC S + AL+ G++ Sbjct: 12 RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -3 Query: 196 PGRRLITGWSVVMAEGPEPDQGT---AAARSTGNR 101 PGR ++G S++MA + D+GT A S G+R Sbjct: 182 PGRHTVSGGSLLMARAEKSDEGTYMCVATNSAGHR 216
>ROBO4_RAT (Q80W87) Roundabout homolog 4 precursor| Length = 961 Score = 28.9 bits (63), Expect = 3.9 Identities = 20/64 (31%), Positives = 29/64 (45%) Frame = +2 Query: 5 LGERSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTLSHDDRPASDQ 184 L R +P P +G++ L PG P +P S+ G+L+ T S RP+ Sbjct: 555 LSSRLGVDPRDPL--DGRRSLISWDPRSPGVPLLPDTSTFYGSLIAEQTSSPPVRPSPQT 612 Query: 185 PAPR 196 PA R Sbjct: 613 PAAR 616
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 28.5 bits (62), Expect = 5.1 Identities = 26/66 (39%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Frame = +2 Query: 2 PLGERSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSS--CRGALVGFGTLSHDDRPA 175 PLG Q PPPR R F A P P RSS R + V G LS PA Sbjct: 27 PLGTAGQPRLGPPPRR--------ARRFSGKAEPRP-RSSRLSRRSSVDLGLLSSWSLPA 77 Query: 176 SDQPAP 193 S P P Sbjct: 78 SPAPDP 83
>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)| (p46Eg265) Length = 407 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 8 GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 100 G Q + + P+EEGKKK L DF G P Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145
>FOXH1_BRARE (Q9I9E1) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (Schmalspur protein) Length = 472 Score = 28.1 bits (61), Expect = 6.6 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -2 Query: 194 GAQADHWLVCRHG*GSRTRPRHRGSS 117 GAQ DH L CR G S R HR S+ Sbjct: 21 GAQRDHHLDCRIGYSSSKRSCHRSSN 46
>TESK1_MOUSE (O70146) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 627 Score = 27.7 bits (60), Expect = 8.6 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = +2 Query: 20 QTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTLSHDDRP 172 QTEP+PPP + + G +PC C G FG LS RP Sbjct: 550 QTEPSPPPSAPREPEEG-----------LPCPGCCLGPF-SFGFLSMCPRP 588
>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)| Length = 971 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 41 PREEGKKKLGFLRDFLPGAPPIPCRSSC 124 P E G++ F+R PGAPP P + C Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369
>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)| Length = 1759 Score = 27.7 bits (60), Expect = 8.6 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Frame = +2 Query: 29 PNPPPREEGK-KKLGFLRDFLPGAPPIPCRSSC-----RGALVG--FGTLSHDDRPASDQ 184 P P P EE K L L A P SSC A+V G++S RPAS Sbjct: 512 PGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVVTNVSGSVSSSGRPASAS 571 Query: 185 PAP 193 PAP Sbjct: 572 PAP 574
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -1 Query: 177 LAGLSSWLRVPNPTKAPR 124 LAGL++W R+P+ T APR Sbjct: 83 LAGLAAWSRLPSRTGAPR 100
>PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)| (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK) (CDC42/RAC effector kinase PAK-A) Length = 545 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 23 TEPNPPPREEGKKKLGFLRDFLPG 94 ++P PP EE KKK F R LPG Sbjct: 38 SKPLPPNPEEKKKKDRFYRSILPG 61
>PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)| (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK) Length = 545 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 23 TEPNPPPREEGKKKLGFLRDFLPG 94 ++P PP EE KKK F R LPG Sbjct: 38 SKPLPPNPEEKKKKDRFYRSILPG 61 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,845,608 Number of Sequences: 219361 Number of extensions: 511436 Number of successful extensions: 1806 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1805 length of database: 80,573,946 effective HSP length: 41 effective length of database: 71,580,145 effective search space used: 1717923480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
