ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 196 2e-47
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 196 2e-47
3gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 2.5
4gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... 40 2.5
5gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete se... 38 9.8
6gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.8
7gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, co... 38 9.8
8gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, comp... 38 9.8
9gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete... 38 9.8
10gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 38 9.8
11gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, comple... 38 9.8
12ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal f... 38 9.8
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
15gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 38 9.8
16dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
17gb|AE015451.1| Pseudomonas putida KT2440 complete genome 38 9.8 
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
           sequence
          Length = 2863

 Score =  196 bits (99), Expect = 2e-47
 Identities = 117/123 (95%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 135
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                       
Query: 136 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgccccg 195
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgccccg 120

              
Query: 196 gcg 198
           |||
Sbjct: 121 gcg 123
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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
           mRNA, complete cds
          Length = 2887

 Score =  196 bits (99), Expect = 2e-47
 Identities = 117/123 (95%)
 Strand = Plus / Plus

                                                                       
Query: 76  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 135
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                       
Query: 136 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgccccg 195
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgccccg 120

              
Query: 196 gcg 198
           |||
Sbjct: 121 gcg 123
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>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gacagaccagccagtgatca 183
             ||||||||||||||||||||
Sbjct: 15395 gacagaccagccagtgatca 15376
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>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gacagaccagccagtgatca 183
              ||||||||||||||||||||
Sbjct: 106152 gacagaccagccagtgatca 106133
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>gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete sequence
          Length = 41278

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 112  tcgatcgagctgccgcggt 130
            |||||||||||||||||||
Sbjct: 8429 tcgatcgagctgccgcggt 8447
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     ttcctccgcgatttcctcc 89
              |||||||||||||||||||
Sbjct: 119475 ttcctccgcgatttcctcc 119457
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>gb|AC157566.6| Mus musculus chromosome 15, clone RP23-415D19, complete sequence
          Length = 196738

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   aacccaaccctcccccaag 45
            |||||||||||||||||||
Sbjct: 4665 aacccaaccctcccccaag 4683
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>gb|AC146115.2| Pan troglodytes BAC clone RP43-38M17 from 7, complete sequence
          Length = 204127

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     cccaaccctcccccaagag 47
              |||||||||||||||||||
Sbjct: 142349 cccaaccctcccccaagag 142331
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>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence
          Length = 234834

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aaccctcccccaagagaag 50
             |||||||||||||||||||
Sbjct: 71536 aaccctcccccaagagaag 71554
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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    aacccaaccctcccccaag 45
             |||||||||||||||||||
Sbjct: 73612 aacccaaccctcccccaag 73630
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>gb|AC073130.3| Homo sapiens BAC clone RP11-667F14 from 7, complete sequence
          Length = 203403

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    cccaaccctcccccaagag 47
             |||||||||||||||||||
Sbjct: 61178 cccaaccctcccccaagag 61196
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>ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal family member
           (mel-46) (mel-46) mRNA, complete cds
          Length = 2959

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 112 tcgatcgagctgccgcggt 130
           |||||||||||||||||||
Sbjct: 50  tcgatcgagctgccgcggt 32
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 71       ttcctccgcgatttcctcc 89
                |||||||||||||||||||
Sbjct: 20966115 ttcctccgcgatttcctcc 20966097
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 71       ttcctccgcgatttcctcc 89
                |||||||||||||||||||
Sbjct: 21728299 ttcctccgcgatttcctcc 21728281
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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   aacccaaccctcccccaag 45
            |||||||||||||||||||
Sbjct: 8822 aacccaaccctcccccaag 8804
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>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    ttcctccgcgatttcctcc 89
             |||||||||||||||||||
Sbjct: 58204 ttcctccgcgatttcctcc 58186
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 168    gaccagccagtgatcagcc 186
              |||||||||||||||||||
Sbjct: 578741 gaccagccagtgatcagcc 578759


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,000,070
Number of Sequences: 3902068
Number of extensions: 1000070
Number of successful extensions: 63040
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62913
Number of HSP's gapped (non-prelim): 127
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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