ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl56h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit... 69 6e-12
2PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit... 69 6e-12
3RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Prot... 59 8e-09
4RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1 56 4e-08
5RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Prot... 53 3e-07
6RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1 46 4e-05
7BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 30 2.4
8ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2 30 4.1
9PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (E... 30 4.1
10SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 29 5.4
11SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 29 5.4
12NIFS_BRAJA (P37030) Cysteine desulfurase (EC 2.8.1.7) (Nitrogena... 29 5.4
13SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 5.4
14SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1 29 5.4
15YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4 29 7.1
16YACF_SHIFL (Q83MF4) UPF0289 protein yacF 29 7.1
17BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTP... 29 7.1
18BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc... 29 7.1
19BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc... 29 7.1
20DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polype... 28 9.2
21DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polype... 28 9.2
22DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypept... 28 9.2

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +2

Query: 290 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 448
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107



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>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +2

Query: 290 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 448
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107



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>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +2

Query: 293 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 445
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTL 107



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>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 317 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 445
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETM 90



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>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/51 (49%), Positives = 37/51 (72%)
 Frame = +2

Query: 293 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 445
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDL 98



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>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 293 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 445
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDL 99



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
            S ++  P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1123 SDKEAPPPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159



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>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 132
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387



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>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)|
           (Phosphorylethanolamine transferase)
           (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 116 IRFGDGAGGLARVRGASGTEATRRCCVGVY 27
           IR G GAGG A ++G  G    R  C G Y
Sbjct: 2   IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 611 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 647



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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 606 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 642



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>NIFS_BRAJA (P37030) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase|
           metalloclusters biosynthesis protein nifS)
          Length = 393

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 472 RSGILRSRFKGSIVWAEELQRLGDRRHRACS*TNLLPHALEGEPL 338
           R G LR R +  I+   E   LGD R+R  + TN+    LEGE +
Sbjct: 267 RIGALRDRLEQGILRNGECVVLGDIRNRLANTTNIAFDHLEGEAI 311



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 592 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628



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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
           S R+ +P  QRR +  P   R  ASPP P   R  P+
Sbjct: 585 SPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 621



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>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 34  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 129
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48



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>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 329 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 427
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113



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>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum|
           protein MSE55)
          Length = 391

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  RSSRK*TPTQQRRVASVPLAPRTLASPPAPSP 108
           RS R     + + V  V   PR +ASPPAPSP
Sbjct: 76  RSPRSFLAKKLQLVRRVGAPPRRMASPPAPSP 107



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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNR 114
            S ++  P ++  +  VPLAP    +PP+P+P R
Sbjct: 1123 SDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPAR 1155



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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 16   SSRK*TPTQQRRVASVPLAPRTLASPPAPSPNRIRPA 126
            S ++  P ++  +  VPLAP    +PP+P+P R   A
Sbjct: 1118 SDKEAPPPKEGVLGQVPLAPPQPGAPPSPAPARFSTA 1154



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>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1281

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157



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>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued) (p135)
          Length = 1278

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157



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>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 98
           +K   L+ + P  A  +R  TTR P P++PAS
Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,378,299
Number of Sequences: 219361
Number of extensions: 549364
Number of successful extensions: 2945
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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