ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl56h01 |
|---|---|
| Clone Library Name | barley_pub |
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 45.8 bits (107), Expect = 4e-05 Identities = 22/41 (53%), Positives = 31/41 (75%) Frame = +2 Query: 308 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKP Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKP 95
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 45.8 bits (107), Expect = 4e-05 Identities = 22/41 (53%), Positives = 31/41 (75%) Frame = +2 Query: 308 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 +LE+ V R + D + R ALE +R++IRS+T+SMTSVPKP Sbjct: 55 ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKP 95
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/40 (42%), Positives = 29/40 (72%) Frame = +2 Query: 311 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 LEL V R ++ D + +L ++++ I+++TSSMT+VPKP Sbjct: 48 LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKP 87
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +2 Query: 311 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 LEL V QD P + +L +++ IR++TSSMT+VPKP Sbjct: 57 LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKP 96
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 36.6 bits (83), Expect = 0.027 Identities = 16/32 (50%), Positives = 25/32 (78%) Frame = +2 Query: 335 QDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 Q+ D + + ALE+M+ I+++TSSMT+VPKP Sbjct: 48 QESDATLYKPALEAMKNSIKTSTSSMTAVPKP 79
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 31.6 bits (70), Expect = 0.85 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +2 Query: 311 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKP 430 LE+ V + D + L +++ I+++TSSMT+VPKP Sbjct: 49 LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKP 88
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = +3 Query: 9 AAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116 AAK SK L+ + P A +R TTR P P++PAS Sbjct: 125 AAKTSK---LRGLKPKKAPTARKTTTRRPKPTRPAS 157
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = +3 Query: 9 AAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116 AAK SK L+ + P A +R TTR P P++PAS Sbjct: 125 AAKTSK---LRGLKPKKAPTARKTTTRRPKPTRPAS 157
>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)| (Phosphorylethanolamine transferase) (CTP:phosphoethanolamine cytidylyltransferase) Length = 404 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -2 Query: 134 IRFGDGAGGLARVRGASGTEATRRCCVGVY 45 IR G GAGG A ++G G R C G Y Sbjct: 2 IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31
>ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransferase component| of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) (E2) (E2 Length = 453 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 3 APAAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116 APAA KAE P AAP + P+PSQP S Sbjct: 158 APAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPS 195
>AGRN_HUMAN (O00468) Agrin precursor| Length = 2045 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 6 PAAKQSKAEILQKINPHAAAPSRLRTTRPPNPSQP 110 P AK + A ++ P APSR+ RPP P QP Sbjct: 1297 PVAKTTAAPTTRR--PPTTAPSRVPGRRPPAPQQP 1329
>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) (p135) Length = 1278 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 21 SKAEILQKINPHAAAPSRLRTTRPPNPSQPAS 116 +K L+ + P A +R TTR P P++PAS Sbjct: 126 AKTSKLRGLKPKKAPTARKTTTRRPKPTRPAS 157
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 70 VASVPLAPRTLASPPAPSPNRIRPA 144 +A VPLAP +PP+P+P R A Sbjct: 1135 LAQVPLAPPQPGAPPSPAPARFSTA 1159
>YACF_SALTY (P67693) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +2 Query: 347 PGVQRLALESMRQEIRSATSSMTSVPK 427 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107
>YACF_SALTI (P67694) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +2 Query: 347 PGVQRLALESMRQEIRSATSSMTSVPK 427 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107
>YACF_SALPA (Q5PDD7) UPF0289 protein yacF| Length = 247 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +2 Query: 347 PGVQRLALESMRQEIRSATSSMTSVPK 427 PGV + +E++RQ+++SA S + S P+ Sbjct: 81 PGVDQDRIEALRQQLKSAGSVLISAPR 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,232,186 Number of Sequences: 219361 Number of extensions: 376459 Number of successful extensions: 1978 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1974 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
